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Conserved domains on  [gi|1081125618|gb|OFS74326|]
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hypothetical protein HMPREF3167_05635 [Trueperella sp. HMSC08B05]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4261 super family cl46310
Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. ...
 197-270 4.54e-13

Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.


The actual alignment was detected with superfamily member pfam14080:

Pssm-ID: 480650  Cd Length: 77  Bit Score: 63.01  E-value: 4.54e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081125618 197 RTLGLTNFGHLDVQVRESTRSEEDVYNLLMNVANYVVTGDTFLLPSQTLGYTDGEQIVISQ-EVSQADGA-TVIRL 270
Cdd:pfam14080   1 YTYGLDAFGLPDLEVHFSDIDPNEVADFLYNIALYILENGVVLKDGDTIGFSEDQKWKITQsEGSLVQPPrEVLKI 76
 
Name Accession Description Interval E-value
DUF4261 pfam14080
Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. ...
 197-270 4.54e-13

Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.


Pssm-ID: 464083  Cd Length: 77  Bit Score: 63.01  E-value: 4.54e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081125618 197 RTLGLTNFGHLDVQVRESTRSEEDVYNLLMNVANYVVTGDTFLLPSQTLGYTDGEQIVISQ-EVSQADGA-TVIRL 270
Cdd:pfam14080   1 YTYGLDAFGLPDLEVHFSDIDPNEVADFLYNIALYILENGVVLKDGDTIGFSEDQKWKITQsEGSLVQPPrEVLKI 76
 
Name Accession Description Interval E-value
DUF4261 pfam14080
Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. ...
 197-270 4.54e-13

Domain of unknown function (DUF4261); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.


Pssm-ID: 464083  Cd Length: 77  Bit Score: 63.01  E-value: 4.54e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1081125618 197 RTLGLTNFGHLDVQVRESTRSEEDVYNLLMNVANYVVTGDTFLLPSQTLGYTDGEQIVISQ-EVSQADGA-TVIRL 270
Cdd:pfam14080   1 YTYGLDAFGLPDLEVHFSDIDPNEVADFLYNIALYILENGVVLKDGDTIGFSEDQKWKITQsEGSLVQPPrEVLKI 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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