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Conserved domains on  [gi|1081184711|gb|OFT30039|]
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hypothetical protein HMPREF3170_05325 [Corynebacterium sp. HMSC08D02]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3566 super family cl13516
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-111 1.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


The actual alignment was detected with superfamily member pfam12089:

Pssm-ID: 432323  Cd Length: 118  Bit Score: 74.48  E-value: 1.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081184711   5 KIVVRRVGVASVFKVATILALVGFVAWMLGAAIVYYGLAQTGVIDSLNSLVSGVGGDQ-------VIDATLVMSAAGLFG 77
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDLVGGDsgfdlssYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1081184711  78 LIGVVFIAVMAPLTALLYNAIADLVGGVTLVMSN 111
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Name Accession Description Interval E-value
DUF3566 pfam12089
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-111 1.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


Pssm-ID: 432323  Cd Length: 118  Bit Score: 74.48  E-value: 1.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081184711   5 KIVVRRVGVASVFKVATILALVGFVAWMLGAAIVYYGLAQTGVIDSLNSLVSGVGGDQ-------VIDATLVMSAAGLFG 77
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDLVGGDsgfdlssYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1081184711  78 LIGVVFIAVMAPLTALLYNAIADLVGGVTLVMSN 111
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Name Accession Description Interval E-value
DUF3566 pfam12089
Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally ...
 5-111 1.45e-18

Transmembrane domain of unknown function (DUF3566); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.


Pssm-ID: 432323  Cd Length: 118  Bit Score: 74.48  E-value: 1.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081184711   5 KIVVRRVGVASVFKVATILALVGFVAWMLGAAIVYYGLAQTGVIDSLNSLVSGVGGDQ-------VIDATLVMSAAGLFG 77
Cdd:pfam12089   5 RLQLTRVDPWSVMKLSFLLSVALFIVWVVAVAVLWLVLDAMGVFDSINSLVGDLVGGDsgfdlssYISFGRVFGFAALIG 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1081184711  78 LIGVVFIAVMAPLTALLYNAIADLVGGVTLVMSN 111
Cdd:pfam12089  85 AVNVVLLTALATLGAFIYNLAADLVGGLEVTLAD 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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