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Conserved domains on  [gi|1081297151|gb|OFU37655|]
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30S ribosomal protein S4 [Clostridium sp. HMSC19B11]

Protein Classification

ribosomal protein uS4 family protein( domain architecture ID 11424867)

universal ribosomal protein uS4 family protein similar to Homo sapiens U3 small nucleolar ribonucleoprotein protein IMP3 that is required for the early cleavages during pre-18S ribosomal RNA processing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-207 2.87e-131

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 367.09  E-value: 2.87e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMKLFLKGDRcytdKCAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYER 80
Cdd:COG0522     1 MARYTGPKCKLCRREGVKLFLKGER----KCALERRPYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  81 AENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNL 160
Cdd:COG0522    77 AARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEA 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1081297151 161 VEVN-SRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:COG0522   157 LESAeQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-207 2.87e-131

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 367.09  E-value: 2.87e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMKLFLKGDRcytdKCAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYER 80
Cdd:COG0522     1 MARYTGPKCKLCRREGVKLFLKGER----KCALERRPYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  81 AENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNL 160
Cdd:COG0522    77 AARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEA 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1081297151 161 VEVN-SRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:COG0522   157 LESAeQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-207 3.17e-123

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 346.71  E-value: 3.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMKLFLKGDRCYTDKcaivkrnYAPGQHGQGRKK--VSNYGLQLREKQKVKRIYGVLETQFRNLY 78
Cdd:PRK05327    1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRK-------YPPGQHGQRRRKpkLSDYGLQLREKQKLRRIYGVLEKQFRRYF 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  79 ERAENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFK 158
Cdd:PRK05327   74 KEAARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIK 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1081297151 159 NLVEVNS-RIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:PRK05327  154 EALELAErRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-207 2.68e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 260.70  E-value: 2.68e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   3 RYTGASCRQCRREGMKLFLKGDRcytdkcAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYERAE 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRK------LLLKRKYPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAK 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  83 NMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNLVE 162
Cdd:TIGR01017  75 KLKGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1081297151 163 VNS-RIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:TIGR01017 155 TNGqRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-97 4.12e-37

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 124.58  E-value: 4.12e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   3 RYTGASCRQCRREGMKLFLKGdRCYTD-KCAIVKRNY--APGQHGQGRKkVSNYGLQLREKQKVKRIYGVLETQFRNLYE 79
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKG-RCHRElKVAQNRREYpkYPGQHGKIRK-LSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 1081297151  80 RAENMPGKAGENLLSLLE 97
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 98-158 8.70e-19

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 76.52  E-value: 8.70e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081297151  98 RRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFK 158
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
S4 smart00363
S4 RNA-binding domain;
98-156 3.48e-16

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 69.54  E-value: 3.48e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1081297151   98 RRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAK 156
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRLK 59
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-207 2.87e-131

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 367.09  E-value: 2.87e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMKLFLKGDRcytdKCAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYER 80
Cdd:COG0522     1 MARYTGPKCKLCRREGVKLFLKGER----KCALERRPYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  81 AENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNL 160
Cdd:COG0522    77 AARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEA 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1081297151 161 VEVN-SRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:COG0522   157 LESAeQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-207 3.17e-123

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 346.71  E-value: 3.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMKLFLKGDRCYTDKcaivkrnYAPGQHGQGRKK--VSNYGLQLREKQKVKRIYGVLETQFRNLY 78
Cdd:PRK05327    1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRK-------YPPGQHGQRRRKpkLSDYGLQLREKQKLRRIYGVLEKQFRRYF 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  79 ERAENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFK 158
Cdd:PRK05327   74 KEAARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIK 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1081297151 159 NLVEVNS-RIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:PRK05327  154 EALELAErRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-207 2.68e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 260.70  E-value: 2.68e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   3 RYTGASCRQCRREGMKLFLKGDRcytdkcAIVKRNYAPGQHGQGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYERAE 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRK------LLLKRKYPPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAK 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  83 NMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNLVE 162
Cdd:TIGR01017  75 KLKGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1081297151 163 VNS-RIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK 207
Cdd:TIGR01017 155 TNGqRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-206 3.16e-44

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 146.13  E-value: 3.16e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   1 MARYTGASCRQCRREGMklfLKGdrcYTDKCAIvkrnyaPGQHGQGR---KKVSNYGLQLREKQKVKRIYGVLETQFRNL 77
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGA---LPG---LTSKTPR------PGSDLRNQsrsGKKSQYRIRLEEKQKLRFNYGLTERQLLKY 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  78 YERAENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKF 157
Cdd:CHL00113   69 VRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLI 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1081297151 158 KNLVEVNSRI-APKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYS 206
Cdd:CHL00113  149 QNNLESSPREeLPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYS 198
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-97 4.12e-37

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 124.58  E-value: 4.12e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151   3 RYTGASCRQCRREGMKLFLKGdRCYTD-KCAIVKRNY--APGQHGQGRKkVSNYGLQLREKQKVKRIYGVLETQFRNLYE 79
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKG-RCHRElKVAQNRREYpkYPGQHGKIRK-LSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 1081297151  80 RAENMPGKAGENLLSLLE 97
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 98-158 8.70e-19

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 76.52  E-value: 8.70e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1081297151  98 RRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFK 158
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
rps4p PRK04051
30S ribosomal protein S4P; Validated
 90-143 5.20e-18

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 77.60  E-value: 5.20e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1081297151  90 ENLLSL-----LERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGD 143
Cdd:PRK04051   90 DDVLSLtvediLERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYLVSVEE 148
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 98-145 7.53e-17

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 70.98  E-value: 7.53e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1081297151  98 RRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVI 145
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
98-156 3.48e-16

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 69.54  E-value: 3.48e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1081297151   98 RRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAK 156
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRLK 59
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 96-142 1.22e-12

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 63.21  E-value: 1.22e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1081297151  96 LERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVG 142
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYIVRLE 148
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 95-141 1.43e-07

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 49.69  E-value: 1.43e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1081297151  95 LLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKV 141
Cdd:PTZ00155  104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFLVRV 150
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 94-141 1.95e-06

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 46.28  E-value: 1.95e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1081297151  94 SLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKV 141
Cdd:PLN00189  105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRV 152
TyrS COG0162
Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA ...
 54-145 2.04e-04

Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439932 [Multi-domain]  Cd Length: 409  Bit Score: 41.17  E-value: 2.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1081297151  54 GLQLREKQK------VKRIYGVLETQ-----FRNLYER---AENMP------GKAGENLLSLLERrldnvvyrMGLASSR 113
Cdd:COG0162   286 GPNPREAKKrlaeeiTALVHGEEAAEaaeeaFEALFGKgelPDDLPevelsaAEGGIPLVDLLVE--------AGLAASK 357

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1081297151 114 KEARQLVTHGHFTLNGNKVDIPSLIVKVGDVI 145
Cdd:COG0162   358 SEARRLIKQGGVSVNGEKVTDPDAVLTAGDLL 389
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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