|
Name |
Accession |
Description |
Interval |
E-value |
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
50-372 |
3.16e-36 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
:
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 147.44 E-value: 3.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 50 IYSLVADQQGTIWLGNSQGLSRY--QDGELERFANGKELLAERVYDLFLDSQERLWLAygpqlTGQSLAVSMYQNGDWRH 127
Cdd:COG3292 83 IRALLEDSDGRLWIGTDGGLSRYdpKTDKFTRYPLDPGLPNNSIRSIAEDSDGNIWVG-----TSNGLYRYDPKTGKFKR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 128 FG--GIESNTVFSFTEDQQGNIYA---GGFF---EQGGLFIF--TGNQFQRLADFPQQI-----AINDLYTDKRGTIWMA 192
Cdd:COG3292 158 FTldGLPSNTITSLAEDADGNLWVdsdGNLWigtDGNGLYRLdpNTGKFEHITHDPDPNslssnSIYSLFEDREGNLWVG 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 193 STDSGIFSYNPvskeqrqyatRLARIQLKQGFEEVPLPNNDIRSIGQGQDG----KMWFGGefeqserQTAGLVSFDGAN 268
Cdd:COG3292 238 TYGGGLNYLDP----------NNSKFKSYRHNDPNGLSGNSVRSIAEDSDGnlwiRLWIGT-------YGGGLFRLDPKT 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 269 -TWKSYNRNnsGLLDERIFAILPDPEAGVWFATAS-GVNYY--SDGNWQAFKASDGLPAGAINDLLILSPYKIWLATEQG 344
Cdd:COG3292 301 gKFKRYNPN--GLPSNSVYSILEDSDGNLWIGTSGgGLYRYdpKTGKFTKFSEDNGLSNNFIRSILEDSDGNLWVGTNGG 378
|
330 340
....*....|....*....|....*...
gi 1082978407 345 AWQLTNQNPQVVPLEVNDLRASVGDGAV 372
Cdd:COG3292 379 LYRLDPKTGKFTNFTHDPDKNGLSSNYI 406
|
|
| myxo_dep_M36 super family |
cl45606 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
419-644 |
3.01e-11 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
The actual alignment was detected with superfamily member NF038112:
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 67.37 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 419 TNDAIYIFKVLtrVKGGRLS--QGVAVTAIPQEKTialPLAHAGKDQVTVVGVETMLAGNQSQYFTNSASYRWTLEDGPv 496
Cdd:NF038112 1343 TADTQLTFTLT--VSDGTASatDTVTVTVRNVNRA---PVANAGADQTVDERSTVTLSGSATDPDGDALTYAWTQTAGP- 1416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 497 rAVQFDSTDIVHPRFI-PQVPGRYVFSL-LITDAKGQKSiqnELSRVVVQVKLASelKQPIVRLKEkEIKVEKGQKVVMD 574
Cdd:NF038112 1417 -TVTLTGADTATASFTaPEVAADTELTFqLTVSADGQAS---ADVTVTVTVRNVN--RAPVAHAGE-SITVDEGSTVTLD 1489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1082978407 575 ASESIFSTTTASFQWKLLAGpiPKVAWDLIDVAKPSFITHVVGV---YLFELMITDAAGhQSEPAEVTVLVSE 644
Cdd:NF038112 1490 ASATDPDGDTLTYAWTQVAG--PSVTLTGADSAKLTFTAPEVSAdttLTFSLTVTDGSG-SSGPVVVTVTVKN 1559
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
774-815 |
1.72e-09 |
|
S-layer homology domain;
:
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 53.75 E-value: 1.72e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 774 FADVAADAWYQPYIGRAVNLALIKGFEDNTFKPNQTITRSEA 815
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
713-754 |
1.13e-08 |
|
S-layer homology domain;
:
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 51.44 E-value: 1.13e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1082978407 713 YRDVtDQNIWYFPYVMTAAKAGII-GSGDGKFHPDQSITRAEA 754
Cdd:pfam00395 1 FKDV-KSVAAWAEAVAALAELGIIsGYPDGTFRPNEPITRAEA 42
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
651-692 |
8.52e-06 |
|
S-layer homology domain;
:
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 43.35 E-value: 8.52e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 651 FKDLPDSHWSRDYFSTLKGQKIITGYEDDTVKPFQSISRVEF 692
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
357-436 |
3.53e-05 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
:
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 42.99 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 357 PLEVNDLRAS-VGDGAVVLSWLPVINPEAVGYVV-LQSLDQGKNFTERTFLNDPDDYFVNLSNLTNDAIYIFKVLTRVKG 434
Cdd:smart00060 1 PSPPSNLRVTdVTSTSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80
|
..
gi 1082978407 435 GR 436
Cdd:smart00060 81 GE 82
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
50-372 |
3.16e-36 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 147.44 E-value: 3.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 50 IYSLVADQQGTIWLGNSQGLSRY--QDGELERFANGKELLAERVYDLFLDSQERLWLAygpqlTGQSLAVSMYQNGDWRH 127
Cdd:COG3292 83 IRALLEDSDGRLWIGTDGGLSRYdpKTDKFTRYPLDPGLPNNSIRSIAEDSDGNIWVG-----TSNGLYRYDPKTGKFKR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 128 FG--GIESNTVFSFTEDQQGNIYA---GGFF---EQGGLFIF--TGNQFQRLADFPQQI-----AINDLYTDKRGTIWMA 192
Cdd:COG3292 158 FTldGLPSNTITSLAEDADGNLWVdsdGNLWigtDGNGLYRLdpNTGKFEHITHDPDPNslssnSIYSLFEDREGNLWVG 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 193 STDSGIFSYNPvskeqrqyatRLARIQLKQGFEEVPLPNNDIRSIGQGQDG----KMWFGGefeqserQTAGLVSFDGAN 268
Cdd:COG3292 238 TYGGGLNYLDP----------NNSKFKSYRHNDPNGLSGNSVRSIAEDSDGnlwiRLWIGT-------YGGGLFRLDPKT 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 269 -TWKSYNRNnsGLLDERIFAILPDPEAGVWFATAS-GVNYY--SDGNWQAFKASDGLPAGAINDLLILSPYKIWLATEQG 344
Cdd:COG3292 301 gKFKRYNPN--GLPSNSVYSILEDSDGNLWIGTSGgGLYRYdpKTGKFTKFSEDNGLSNNFIRSILEDSDGNLWVGTNGG 378
|
330 340
....*....|....*....|....*...
gi 1082978407 345 AWQLTNQNPQVVPLEVNDLRASVGDGAV 372
Cdd:COG3292 379 LYRLDPKTGKFTNFTHDPDKNGLSSNYI 406
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
419-644 |
3.01e-11 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 67.37 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 419 TNDAIYIFKVLtrVKGGRLS--QGVAVTAIPQEKTialPLAHAGKDQVTVVGVETMLAGNQSQYFTNSASYRWTLEDGPv 496
Cdd:NF038112 1343 TADTQLTFTLT--VSDGTASatDTVTVTVRNVNRA---PVANAGADQTVDERSTVTLSGSATDPDGDALTYAWTQTAGP- 1416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 497 rAVQFDSTDIVHPRFI-PQVPGRYVFSL-LITDAKGQKSiqnELSRVVVQVKLASelKQPIVRLKEkEIKVEKGQKVVMD 574
Cdd:NF038112 1417 -TVTLTGADTATASFTaPEVAADTELTFqLTVSADGQAS---ADVTVTVTVRNVN--RAPVAHAGE-SITVDEGSTVTLD 1489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1082978407 575 ASESIFSTTTASFQWKLLAGpiPKVAWDLIDVAKPSFITHVVGV---YLFELMITDAAGhQSEPAEVTVLVSE 644
Cdd:NF038112 1490 ASATDPDGDTLTYAWTQVAG--PSVTLTGADSAKLTFTAPEVSAdttLTFSLTVTDGSG-SSGPVVVTVTVKN 1559
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
774-815 |
1.72e-09 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 53.75 E-value: 1.72e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 774 FADVAADAWYQPYIGRAVNLALIKGFEDNTFKPNQTITRSEA 815
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
713-754 |
1.13e-08 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 51.44 E-value: 1.13e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1082978407 713 YRDVtDQNIWYFPYVMTAAKAGII-GSGDGKFHPDQSITRAEA 754
Cdd:pfam00395 1 FKDV-KSVAAWAEAVAALAELGIIsGYPDGTFRPNEPITRAEA 42
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
455-642 |
2.08e-06 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 51.58 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 455 PLAHAGKDQVTVVGVETMLAGNQSQYFTNSA-SYRWTLEDGPvrAVQFDSTDIVHPRF-IPQVPGR--YVFSLLITDAKG 530
Cdd:NF038112 1188 PVANAGPDQTVLERTTVTLNGSGSFDPDGDPlTYAWTQVSGP--AVTLTGADTATPSFtAPEVTADtvLTFQLVVSDGTK 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 531 QKSIQNelsrvvVQVKLASELKQPIVRLKEKEIkVEKGQKVVMDASESIFSTTTASFQWKLLAGpiPKVAWDLIDVAKPS 610
Cdd:NF038112 1266 TSAPDT------VTVLVRNVNRAPVAVAGAPAT-VDERSTVTLDGSGTDADGDALTYAWTQTSG--PAVTLTGATTATAT 1336
|
170 180 190
....*....|....*....|....*....|....*
gi 1082978407 611 FITHVVG---VYLFELMITDaaGHQSEPAEVTVLV 642
Cdd:NF038112 1337 FTAPEVTadtQLTFTLTVSD--GTASATDTVTVTV 1369
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
651-692 |
8.52e-06 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 43.35 E-value: 8.52e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 651 FKDLPDSHWSRDYFSTLKGQKIITGYEDDTVKPFQSISRVEF 692
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
357-436 |
3.53e-05 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 42.99 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 357 PLEVNDLRAS-VGDGAVVLSWLPVINPEAVGYVV-LQSLDQGKNFTERTFLNDPDDYFVNLSNLTNDAIYIFKVLTRVKG 434
Cdd:smart00060 1 PSPPSNLRVTdVTSTSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80
|
..
gi 1082978407 435 GR 436
Cdd:smart00060 81 GE 82
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
353-428 |
2.47e-03 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 41.53 E-value: 2.47e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1082978407 353 PQVVPLEVNDLRASV-GDGAVVLSWLPVINPEAVGYVVLQSLDQGKNFTERTFLNDPddYFVNlSNLTNDAIYIFKV 428
Cdd:COG3401 229 PTTPPSAPTGLTATAdTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTKVATVTTT--SYTD-TGLTNGTTYYYRV 302
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
50-372 |
3.16e-36 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 147.44 E-value: 3.16e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 50 IYSLVADQQGTIWLGNSQGLSRY--QDGELERFANGKELLAERVYDLFLDSQERLWLAygpqlTGQSLAVSMYQNGDWRH 127
Cdd:COG3292 83 IRALLEDSDGRLWIGTDGGLSRYdpKTDKFTRYPLDPGLPNNSIRSIAEDSDGNIWVG-----TSNGLYRYDPKTGKFKR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 128 FG--GIESNTVFSFTEDQQGNIYA---GGFF---EQGGLFIF--TGNQFQRLADFPQQI-----AINDLYTDKRGTIWMA 192
Cdd:COG3292 158 FTldGLPSNTITSLAEDADGNLWVdsdGNLWigtDGNGLYRLdpNTGKFEHITHDPDPNslssnSIYSLFEDREGNLWVG 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 193 STDSGIFSYNPvskeqrqyatRLARIQLKQGFEEVPLPNNDIRSIGQGQDG----KMWFGGefeqserQTAGLVSFDGAN 268
Cdd:COG3292 238 TYGGGLNYLDP----------NNSKFKSYRHNDPNGLSGNSVRSIAEDSDGnlwiRLWIGT-------YGGGLFRLDPKT 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 269 -TWKSYNRNnsGLLDERIFAILPDPEAGVWFATAS-GVNYY--SDGNWQAFKASDGLPAGAINDLLILSPYKIWLATEQG 344
Cdd:COG3292 301 gKFKRYNPN--GLPSNSVYSILEDSDGNLWIGTSGgGLYRYdpKTGKFTKFSEDNGLSNNFIRSILEDSDGNLWVGTNGG 378
|
330 340
....*....|....*....|....*...
gi 1082978407 345 AWQLTNQNPQVVPLEVNDLRASVGDGAV 372
Cdd:COG3292 379 LYRLDPKTGKFTNFTHDPDKNGLSSNYI 406
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
50-430 |
1.97e-27 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 119.71 E-value: 1.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 50 IYSLVADQQGTIWLG-NSQGLSRYqDGELERF-----ANGKELLAERVYDLFLDSQERLWLAY--GPQLTGqsLAVSMYQ 121
Cdd:COG3292 223 IYSLFEDREGNLWVGtYGGGLNYL-DPNNSKFksyrhNDPNGLSGNSVRSIAEDSDGNLWIRLwiGTYGGG--LFRLDPK 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 122 NGDWRHF--GGIESNTVFSFTEDQQGNIYAGGFfeQGGLFIF--TGNQFQRLADFP--QQIAINDLYTDKRGTIWMAsTD 195
Cdd:COG3292 300 TGKFKRYnpNGLPSNSVYSILEDSDGNLWIGTS--GGGLYRYdpKTGKFTKFSEDNglSNNFIRSILEDSDGNLWVG-TN 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 196 SGIFSYNPVSKEQRQYatrlariqlKQGFEEVPLPNNDIRSIGQGQDGKMWFGGEfeqserqTAGLVSFDGAN-TWKSYN 274
Cdd:COG3292 377 GGLYRLDPKTGKFTNF---------THDPDKNGLSSNYINSIFEDSDGRLWIGTD-------GGGLYRYDPKTgKFKHFT 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 275 RNNsGLLDERIFAILPDPEAGVWFATASGVNYYSDGNWQAFKASDGLPAGAINDLLILSPYKIWLATEQGAWQLTNQNPQ 354
Cdd:COG3292 441 TKD-GLPSNTIYSILEDDNGNLWNFNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLL 519
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1082978407 355 VVPLEVNDLRASVGDGAVVLSWLPVINPEAVGYVVLQSLDQGKNFTERTFLNDPDDYFVNLSNLTNDAIYIFKVLT 430
Cdd:COG3292 520 TLLLLALLLLLSLLLLLLLLLLLLLLLLLLLLLLLLLILLLLLLRLLLLLLLLELLERLLALLLEIELLLTLLLLL 595
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
208-363 |
2.29e-15 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 80.80 E-value: 2.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 208 QRQYATRLARIQLKQGfeevpLPNNDIRSIGQGQDGKMWFGGEfeqserqtAGLVSFDGAN--TWKSYNRNNSGLLDERI 285
Cdd:COG3292 17 QAAQQYRFRHLTVEDG-----LPQNSVNSIAQDSDGFLWIGTE--------DGLNRYDGYEfkVFRHDPGDPNSLPSNYI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 286 FAILPDPEAGVWFATASGVNYY--SDGNWQAFKASDGLPAGAINDLLILSPYKIWLATEQGAWQLTNQNPQVVPLEVNDL 363
Cdd:COG3292 84 RALLEDSDGRLWIGTDGGLSRYdpKTDKFTRYPLDPGLPNNSIRSIAEDSDGNIWVGTSNGLYRYDPKTGKFKRFTLDGL 163
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
419-644 |
3.01e-11 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 67.37 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 419 TNDAIYIFKVLtrVKGGRLS--QGVAVTAIPQEKTialPLAHAGKDQVTVVGVETMLAGNQSQYFTNSASYRWTLEDGPv 496
Cdd:NF038112 1343 TADTQLTFTLT--VSDGTASatDTVTVTVRNVNRA---PVANAGADQTVDERSTVTLSGSATDPDGDALTYAWTQTAGP- 1416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 497 rAVQFDSTDIVHPRFI-PQVPGRYVFSL-LITDAKGQKSiqnELSRVVVQVKLASelKQPIVRLKEkEIKVEKGQKVVMD 574
Cdd:NF038112 1417 -TVTLTGADTATASFTaPEVAADTELTFqLTVSADGQAS---ADVTVTVTVRNVN--RAPVAHAGE-SITVDEGSTVTLD 1489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1082978407 575 ASESIFSTTTASFQWKLLAGpiPKVAWDLIDVAKPSFITHVVGV---YLFELMITDAAGhQSEPAEVTVLVSE 644
Cdd:NF038112 1490 ASATDPDGDTLTYAWTQVAG--PSVTLTGADSAKLTFTAPEVSAdttLTFSLTVTDGSG-SSGPVVVTVTVKN 1559
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
774-815 |
1.72e-09 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 53.75 E-value: 1.72e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 774 FADVAADAWYQPYIGRAVNLALIKGFEDNTFKPNQTITRSEA 815
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
713-754 |
1.13e-08 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 51.44 E-value: 1.13e-08
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1082978407 713 YRDVtDQNIWYFPYVMTAAKAGII-GSGDGKFHPDQSITRAEA 754
Cdd:pfam00395 1 FKDV-KSVAAWAEAVAALAELGIIsGYPDGTFRPNEPITRAEA 42
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
455-642 |
2.08e-06 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 51.58 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 455 PLAHAGKDQVTVVGVETMLAGNQSQYFTNSA-SYRWTLEDGPvrAVQFDSTDIVHPRF-IPQVPGR--YVFSLLITDAKG 530
Cdd:NF038112 1188 PVANAGPDQTVLERTTVTLNGSGSFDPDGDPlTYAWTQVSGP--AVTLTGADTATPSFtAPEVTADtvLTFQLVVSDGTK 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 531 QKSIQNelsrvvVQVKLASELKQPIVRLKEKEIkVEKGQKVVMDASESIFSTTTASFQWKLLAGpiPKVAWDLIDVAKPS 610
Cdd:NF038112 1266 TSAPDT------VTVLVRNVNRAPVAVAGAPAT-VDERSTVTLDGSGTDADGDALTYAWTQTSG--PAVTLTGATTATAT 1336
|
170 180 190
....*....|....*....|....*....|....*
gi 1082978407 611 FITHVVG---VYLFELMITDaaGHQSEPAEVTVLV 642
Cdd:NF038112 1337 FTAPEVTadtQLTFTLTVSD--GTASATDTVTVTV 1369
|
|
| SLH |
pfam00395 |
S-layer homology domain; |
651-692 |
8.52e-06 |
|
S-layer homology domain;
Pssm-ID: 459798 [Multi-domain] Cd Length: 42 Bit Score: 43.35 E-value: 8.52e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1082978407 651 FKDLPDSHWSRDYFSTLKGQKIITGYEDDTVKPFQSISRVEF 692
Cdd:pfam00395 1 FKDVKSVAAWAEAVAALAELGIISGYPDGTFRPNEPITRAEA 42
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
15-273 |
1.23e-05 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 47.71 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 15 TVLLLANGTGNIWRAAgaaLRDYQISSLKVAEEQLIYSLVADQQGTIWLGNSQG--LSRY--QDGELERFANGKEllAER 90
Cdd:COG4257 29 AVWFTDQGGGRIGRLD---PATGEFTEYPLGGGSGPHGIAVDPDGNLWFTDNGNnrIGRIdpKTGEITTFALPGG--GSN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 91 VYDLFLDSQERLWLA------YGpQLTGQSLAVSMYQngdwrhfGGIESNTVFSFTEDQQGNIYAGGFFEQG-GLFIFTG 163
Cdd:COG4257 104 PHGIAFDPDGNLWFTdqggnrIG-RLDPATGEVTEFP-------LPTGGAGPYGIAVDPDGNLWVTDFGANAiGRIDPDT 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 164 NQFQRLADFPQQIAINDLYTDKRGTIWMASTDSG-IFSYNPVSKEqrqyatrlariqlkqgFEEVPLPNNDIR--SIGQG 240
Cdd:COG4257 176 GTLTEYALPTPGAGPRGLAVDPDGNLWVADTGSGrIGRFDPKTGT----------------VTEYPLPGGGARpyGVAVD 239
|
250 260 270
....*....|....*....|....*....|....
gi 1082978407 241 QDGKMWFGGefeqserQTAG-LVSFDGANTWKSY 273
Cdd:COG4257 240 GDGRVWFAE-------SGANrIVRFDPDTELTEY 266
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
357-436 |
3.53e-05 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 42.99 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 357 PLEVNDLRAS-VGDGAVVLSWLPVINPEAVGYVV-LQSLDQGKNFTERTFLNDPDDYFVNLSNLTNDAIYIFKVLTRVKG 434
Cdd:smart00060 1 PSPPSNLRVTdVTSTSVTLSWEPPPDDGITGYIVgYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80
|
..
gi 1082978407 435 GR 436
Cdd:smart00060 81 GE 82
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
90-324 |
8.43e-05 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 45.01 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 90 RVYDLFLDSQERLWLAygpQLTGQSLAVSMYQNGDWRHFGGIESNTVFSFTEDQQGNI-YAGGFFEQGGLFIFTGNQFQR 168
Cdd:COG4257 18 GPRDVAVDPDGAVWFT---DQGGGRIGRLDPATGEFTEYPLGGGSGPHGIAVDPDGNLwFTDNGNNRIGRIDPKTGEITT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 169 LADFPQQIAINDLYTDKRGTIWMASTDSGifsynpvskeqrqyatRLARIQLKQG-FEEVPLP--NNDIRSIGQGQDGKM 245
Cdd:COG4257 95 FALPGGGSNPHGIAFDPDGNLWFTDQGGN----------------RIGRLDPATGeVTEFPLPtgGAGPYGIAVDPDGNL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 246 WFggefeqSERQTAGLVSFDGA-NTWKSYNRNNSGlldERIFAILPDPEAGVWFA--TASGVNYY--SDGNWQAFKASDG 320
Cdd:COG4257 159 WV------TDFGANAIGRIDPDtGTLTEYALPTPG---AGPRGLAVDPDGNLWVAdtGSGRIGRFdpKTGTVTEYPLPGG 229
|
....*.
gi 1082978407 321 --LPAG 324
Cdd:COG4257 230 gaRPYG 235
|
|
| COG4447 |
COG4447 |
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ... |
261-397 |
6.93e-04 |
|
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];
Pssm-ID: 443546 [Multi-domain] Cd Length: 156 Bit Score: 41.14 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082978407 261 LVSFDGANTWKsynRNNSGLLDERIFAILPDPEAGVWFATASGVNYYS-DG--NWQAFKASDGLPagAINDLLILSPyKI 337
Cdd:COG4447 16 LRSTDGGKTWT---PLSDGLPGLSLRAVAFSDPNTVWVGTGPGGIYRStDGgkTWTEVNSGPDNP--RLFAIAFSDP-NT 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1082978407 338 WLATEQGAWQLTN--QN----PQVVPLEVNDLRASVGDGAVVLSWlpvinpeavGYVVLQSLDQGK 397
Cdd:COG4447 90 GYAAVGGIYRTTDggKTwtkvSSGLPVDLNDVAFLDPGTLYAAGE---------GGLIYRSTDGGE 146
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
353-428 |
2.47e-03 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 41.53 E-value: 2.47e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1082978407 353 PQVVPLEVNDLRASV-GDGAVVLSWLPVINPEAVGYVVLQSLDQGKNFTERTFLNDPddYFVNlSNLTNDAIYIFKV 428
Cdd:COG3401 229 PTTPPSAPTGLTATAdTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTKVATVTTT--SYTD-TGLTNGTTYYYRV 302
|
|
| |
