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Conserved domains on  [gi|1083349970|gb|OGE71215|]
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hypothetical protein A2617_03235 [Candidatus Daviesbacteria bacterium RIFOXYD1_FULL_41_10]

Protein Classification

COG4634 family protein( domain architecture ID 10008645)

COG4634 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4634 COG4634
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General ...
 1-107 1.02e-24

Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General function prediction only];


:

Pssm-ID: 443672  Cd Length: 113  Bit Score: 90.31  E-value: 1.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083349970   1 MKFLLDENIGKEILEFLEQLGHSASRIRVIQ-PGLTDSQVLNLAVSQNSILITSDKDFGELIFKYGQLSSGVILLRLKDE 79
Cdd:COG4634     1 MKFLLDENLSPRLVEWLREAGHDVLHVRDLGlPGASDEEILEYARREGRIIVTKDKDFGELLALSGAPPPGIILLRLGNL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1083349970  80 TSKNKIKALKKVLT--GRKQIKGFTVVIER 107
Cdd:COG4634    81 SPEELAELLRRVLEriEEFLLEGALIVVEP 110
 
Name Accession Description Interval E-value
COG4634 COG4634
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General ...
 1-107 1.02e-24

Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General function prediction only];


Pssm-ID: 443672  Cd Length: 113  Bit Score: 90.31  E-value: 1.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083349970   1 MKFLLDENIGKEILEFLEQLGHSASRIRVIQ-PGLTDSQVLNLAVSQNSILITSDKDFGELIFKYGQLSSGVILLRLKDE 79
Cdd:COG4634     1 MKFLLDENLSPRLVEWLREAGHDVLHVRDLGlPGASDEEILEYARREGRIIVTKDKDFGELLALSGAPPPGIILLRLGNL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1083349970  80 TSKNKIKALKKVLT--GRKQIKGFTVVIER 107
Cdd:COG4634    81 SPEELAELLRRVLEriEEFLLEGALIVVEP 110
DUF5615 pfam18480
Domain of unknown function (DUF5615); This is a domain of unknown function found in potential ...
 1-76 7.83e-20

Domain of unknown function (DUF5615); This is a domain of unknown function found in potential toxin-antitoxin system component.


Pssm-ID: 465782  Cd Length: 77  Bit Score: 76.79  E-value: 7.83e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083349970   1 MKFLLDENIGKEILEFLEQLGHSASRIR-VIQPGLTDSQVLNLAVSQNSILITSDKDFGELIFKYGQlSSGVILLRL 76
Cdd:pfam18480   1 MKLLADENLSPRLVELLRDLGHDVLHVReLGLPGASDEEILEYAKEEGRIIVTKDKDFGELHLLGGP-PPGVILLRL 76
 
Name Accession Description Interval E-value
COG4634 COG4634
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General ...
 1-107 1.02e-24

Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component [General function prediction only];


Pssm-ID: 443672  Cd Length: 113  Bit Score: 90.31  E-value: 1.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083349970   1 MKFLLDENIGKEILEFLEQLGHSASRIRVIQ-PGLTDSQVLNLAVSQNSILITSDKDFGELIFKYGQLSSGVILLRLKDE 79
Cdd:COG4634     1 MKFLLDENLSPRLVEWLREAGHDVLHVRDLGlPGASDEEILEYARREGRIIVTKDKDFGELLALSGAPPPGIILLRLGNL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1083349970  80 TSKNKIKALKKVLT--GRKQIKGFTVVIER 107
Cdd:COG4634    81 SPEELAELLRRVLEriEEFLLEGALIVVEP 110
DUF5615 pfam18480
Domain of unknown function (DUF5615); This is a domain of unknown function found in potential ...
 1-76 7.83e-20

Domain of unknown function (DUF5615); This is a domain of unknown function found in potential toxin-antitoxin system component.


Pssm-ID: 465782  Cd Length: 77  Bit Score: 76.79  E-value: 7.83e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1083349970   1 MKFLLDENIGKEILEFLEQLGHSASRIR-VIQPGLTDSQVLNLAVSQNSILITSDKDFGELIFKYGQlSSGVILLRL 76
Cdd:pfam18480   1 MKLLADENLSPRLVELLRDLGHDVLHVReLGLPGASDEEILEYAKEEGRIIVTKDKDFGELHLLGGP-PPGVILLRL 76
PIN_10 pfam18478
PIN like domain; This is a bacterial domain of unknown function suggested to resemble PIN like ...
 1-57 5.53e-03

PIN like domain; This is a bacterial domain of unknown function suggested to resemble PIN like domains.


Pssm-ID: 436531  Cd Length: 83  Bit Score: 33.41  E-value: 5.53e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1083349970   1 MKFLLDENIGKEI---LEFLEQLGHSASRIRVI-QPGLTDSQVLNLAVSQNSILITSDKDF 57
Cdd:pfam18478   1 MKFFLDENLPPALakaLRALFAEGHEVVHLRDHfAAGTPDEEWIPALAEGGWVVLTKDRRI 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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