NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1084141232|gb|OGL37905|]
View 

hypothetical protein A3E49_01350 [Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_49_19]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
T4SS_pilin super family cl40902
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 68-141 2.60e-03

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


The actual alignment was detected with superfamily member pfam18895:

Pssm-ID: 436814  Cd Length: 71  Bit Score: 34.53  E-value: 2.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084141232  68 IIQTAANLIALVAGIIAVITIIISGFIFVTAGgaiggqragdNPTRAREARTVLTGAIIGLVVVALAWSIVSFV 141
Cdd:pfam18895   8 IINNIFNWISGIGGALAVVVLVIGGIKYLLSG----------DPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Name Accession Description Interval E-value
T4SS_pilin pfam18895
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 68-141 2.60e-03

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


Pssm-ID: 436814  Cd Length: 71  Bit Score: 34.53  E-value: 2.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084141232  68 IIQTAANLIALVAGIIAVITIIISGFIFVTAGgaiggqragdNPTRAREARTVLTGAIIGLVVVALAWSIVSFV 141
Cdd:pfam18895   8 IINNIFNWISGIGGALAVVVLVIGGIKYLLSG----------DPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Name Accession Description Interval E-value
T4SS_pilin pfam18895
Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.
 68-141 2.60e-03

Type IV secretion system pilin; This entry represents likely Type IV secretion system pilins.


Pssm-ID: 436814  Cd Length: 71  Bit Score: 34.53  E-value: 2.60e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084141232  68 IIQTAANLIALVAGIIAVITIIISGFIFVTAGgaiggqragdNPTRAREARTVLTGAIIGLVVVALAWSIVSFV 141
Cdd:pfam18895   8 IINNIFNWISGIGGALAVVVLVIGGIKYLLSG----------DPEERAEAKKAIKWAIIGLVVVFAAPLIVGVI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH