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Conserved domains on  [gi|1084206837|gb|OGL98321|]
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hypothetical protein A2332_03775 [Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_41_18]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG1342 super family cl43392
Predicted DNA-binding protein, UPF0251 family [General function prediction only];
15-65 8.28e-17

Predicted DNA-binding protein, UPF0251 family [General function prediction only];


The actual alignment was detected with superfamily member COG1342:

Pssm-ID: 440953  Cd Length: 99  Bit Score: 67.47  E-value: 8.28e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1084206837 15 ESLRLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKID 65
Cdd:COG1342   40 EAIRLVDLEGLTQEEAAEKMGVSRPTFQRILKSARKKVADALVNGKAIRIE 90
 
Name Accession Description Interval E-value
COG1342 COG1342
Predicted DNA-binding protein, UPF0251 family [General function prediction only];
15-65 8.28e-17

Predicted DNA-binding protein, UPF0251 family [General function prediction only];


Pssm-ID: 440953  Cd Length: 99  Bit Score: 67.47  E-value: 8.28e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1084206837 15 ESLRLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKID 65
Cdd:COG1342   40 EAIRLVDLEGLTQEEAAEKMGVSRPTFQRILKSARKKVADALVNGKAIRIE 90
PRK04217 PRK04217
hypothetical protein; Provisional
 18-64 1.59e-06

hypothetical protein; Provisional


Pssm-ID: 235258  Cd Length: 110  Bit Score: 41.79  E-value: 1.59e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1084206837  18 RLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKI 64
Cdd:PRK04217   52 RLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELII 98
DUF134 pfam02001
Protein of unknown function DUF134; This family of archaeal proteins has no known function. A ...
 15-64 3.58e-05

Protein of unknown function DUF134; This family of archaeal proteins has no known function. A study suggests that some members may be G-quadruplex binding proteins.


Pssm-ID: 280223  Cd Length: 98  Bit Score: 37.98  E-value: 3.58e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1084206837 15 ESLRLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKI 64
Cdd:pfam02001 41 EAIRLVDYEDMSQDDAAAKMGISKATLWRLLTAARKKIADALFEGRAIII 90
 
Name Accession Description Interval E-value
COG1342 COG1342
Predicted DNA-binding protein, UPF0251 family [General function prediction only];
15-65 8.28e-17

Predicted DNA-binding protein, UPF0251 family [General function prediction only];


Pssm-ID: 440953  Cd Length: 99  Bit Score: 67.47  E-value: 8.28e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1084206837 15 ESLRLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKID 65
Cdd:COG1342   40 EAIRLVDLEGLTQEEAAEKMGVSRPTFQRILKSARKKVADALVNGKAIRIE 90
PRK04217 PRK04217
hypothetical protein; Provisional
 18-64 1.59e-06

hypothetical protein; Provisional


Pssm-ID: 235258  Cd Length: 110  Bit Score: 41.79  E-value: 1.59e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1084206837  18 RLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKI 64
Cdd:PRK04217   52 RLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELII 98
DUF134 pfam02001
Protein of unknown function DUF134; This family of archaeal proteins has no known function. A ...
 15-64 3.58e-05

Protein of unknown function DUF134; This family of archaeal proteins has no known function. A study suggests that some members may be G-quadruplex binding proteins.


Pssm-ID: 280223  Cd Length: 98  Bit Score: 37.98  E-value: 3.58e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1084206837 15 ESLRLKCVEGLDQNTCAANMQTSQSTFQRILSSAQKKVAVALVYGMAIKI 64
Cdd:pfam02001 41 EAIRLVDYEDMSQDDAAAKMGISKATLWRLLTAARKKIADALFEGRAIII 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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