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Conserved domains on  [gi|1084432092|gb|OGM99524|]
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MAG: hypothetical protein A2817_02365 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_39_8b]

Protein Classification

c-type cytochrome( domain architecture ID 11449528)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Thermus thermophilus cytochrome c-552, which is a monoheme basic protein that appears to function as an electron donor to cytochrome oxidase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
12-97 2.17e-14

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 64.59  E-value: 2.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGSASVAKmtkvdpsmlDLTTDKNKKRTDADLIEIVRKG--QGKMkPIPKDKLSDDDLK 89
Cdd:COG2010    88 ALARGKALYEQNCAACHGADGKGGLGAAP---------NLTDDALYGGDPEALVETILNGrpGGAM-PAFGGQLSDEEIA 157


                  ....*...
gi 1084432092  90 MVISHIRT 97
Cdd:COG2010   158 ALAAYLRS 165
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
12-97 2.17e-14

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 64.59  E-value: 2.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGSASVAKmtkvdpsmlDLTTDKNKKRTDADLIEIVRKG--QGKMkPIPKDKLSDDDLK 89
Cdd:COG2010    88 ALARGKALYEQNCAACHGADGKGGLGAAP---------NLTDDALYGGDPEALVETILNGrpGGAM-PAFGGQLSDEEIA 157


                  ....*...
gi 1084432092  90 MVISHIRT 97
Cdd:COG2010   158 ALAAYLRS 165
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
12-95 6.50e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 50.48  E-value: 6.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGsasvakmtkvdPSMLDlttdknKKRTDADLIEIVRKGQGKMKPIPKDkLSDDDLKMV 91
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG-----------PSLAG------RALPPEALVDIIRNGKGAMPAFGGD-LSDEELEAL 63


                  ....
gi 1084432092  92 ISHI 95
Cdd:pfam13442  64 AAYL 67
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 12-97 6.28e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 42.57  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGSASVAKMTKVDpsmlDLTTDKNKKRTdadLIEIVRKGQGKMKPIPKDKLSDDDLKMV 91
Cdd:TIGR00782 202 LAAKGQELFADNCTTCHGEDGKGLQELGAPNLTD----DVWLYGGDLKT---ITTTITNGRGGVMPAWGPRLSEAQIKAL 274


                  ....*.
gi 1084432092  92 ISHIRT 97
Cdd:TIGR00782 275 AAYVHS 280
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
12-97 2.17e-14

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 64.59  E-value: 2.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGSASVAKmtkvdpsmlDLTTDKNKKRTDADLIEIVRKG--QGKMkPIPKDKLSDDDLK 89
Cdd:COG2010    88 ALARGKALYEQNCAACHGADGKGGLGAAP---------NLTDDALYGGDPEALVETILNGrpGGAM-PAFGGQLSDEEIA 157


                  ....*...
gi 1084432092  90 MVISHIRT 97
Cdd:COG2010   158 ALAAYLRS 165
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
12-95 6.50e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 50.48  E-value: 6.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGsasvakmtkvdPSMLDlttdknKKRTDADLIEIVRKGQGKMKPIPKDkLSDDDLKMV 91
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG-----------PSLAG------RALPPEALVDIIRNGKGAMPAFGGD-LSDEELEAL 63


                  ....
gi 1084432092  92 ISHI 95
Cdd:pfam13442  64 AAYL 67
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 14-97 2.01e-09

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 49.84  E-value: 2.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  14 QDGKTIYEKRCKTCHGVDSKGSASVAKmtKVDPSMLDLTTDKNKK-RTDADLIEIVRKGQGKMKP----IPKDKLSDDDL 88
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGP--DLAGLAARYPGDALGAiRENKHAIGGGGVDRAGGPPgtgmPAFDGLTDEEI 78


                  ....*....
gi 1084432092  89 KMVISHIRT 97
Cdd:pfam00034  79 ADLVAYLLS 87
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 12-97 6.28e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 42.57  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  12 AAQDGKTIYEKRCKTCHGVDSKGSASVAKMTKVDpsmlDLTTDKNKKRTdadLIEIVRKGQGKMKPIPKDKLSDDDLKMV 91
Cdd:TIGR00782 202 LAAKGQELFADNCTTCHGEDGKGLQELGAPNLTD----DVWLYGGDLKT---ITTTITNGRGGVMPAWGPRLSEAQIKAL 274


                  ....*.
gi 1084432092  92 ISHIRT 97
Cdd:TIGR00782 275 AAYVHS 280
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
10-95 3.62e-03

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 33.72  E-value: 3.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084432092  10 KTAAQDGKTIYEKR-CKTCHGVDSKgsasvakmtKVDPSMLDLtTDKNKKRTDA--DLIEIVRKGQ----GKMKPIPKDK 82
Cdd:COG4654     1 AADAAAGKALAKKSgCLACHAVDKK---------LVGPSYKDV-AKKYKGKADAvaKLAKKIKKGGsgvwGDVPMPPHPQ 70

                          90
                  ....*....|...
gi 1084432092  83 LSDDDLKMVISHI 95
Cdd:COG4654    71 LSDAEAKALVKWI 83
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 13-34 3.63e-03

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 34.83  E-value: 3.63e-03
                          10        20
                  ....*....|....*....|..
gi 1084432092  13 AQDGKTIYEKRCKTCHGVDSKG 34
Cdd:COG3258   117 VERGKALYAERCASCHGADGEG 138
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
13-38 5.21e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 33.32  E-value: 5.21e-03
                          10        20
                  ....*....|....*....|....*.
gi 1084432092  13 AQDGKTIYEKRCKTCHGVDSKGSASV 38
Cdd:COG3474     3 AAAGEKLFNRKCAACHSVDGGAGNRV 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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