MAG: hypothetical protein A3J47_02560 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_43_22]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Avd_IVP_like super family | cl28927 | proteins similar to the diversity-generating retroelement protein bAvd; A superfamily of ... |
23-67 | 5.73e-09 | ||
proteins similar to the diversity-generating retroelement protein bAvd; A superfamily of four-helix bundles that form homopentamers, including the bacterial accessory variability determinant (bAvd) protein and a family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The actual alignment was detected with superfamily member cd16376: Pssm-ID: 355803 Cd Length: 106 Bit Score: 48.30 E-value: 5.73e-09
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| Name | Accession | Description | Interval | E-value | ||
| Avd_like | cd16376 | diversity-generating retroelement protein bAvd and similar proteins; The bacterial accessory ... |
23-67 | 5.73e-09 | ||
diversity-generating retroelement protein bAvd and similar proteins; The bacterial accessory variability determinant (bAvd) protein, together with a reverse transcriptase, is involved in retrohoming processes as part of a diversity-generating retroelement (DGR), a type of system that is involved in generating sequence variation in bacterial proteins by inserting coding information from a template region into a variable region of a protein coding gene. bAvd forms homopentamers and interacts with the reverse transcriptase as well as with DNA and/or RNA. Pssm-ID: 319868 Cd Length: 106 Bit Score: 48.30 E-value: 5.73e-09
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| Name | Accession | Description | Interval | E-value | ||
| Avd_like | cd16376 | diversity-generating retroelement protein bAvd and similar proteins; The bacterial accessory ... |
23-67 | 5.73e-09 | ||
diversity-generating retroelement protein bAvd and similar proteins; The bacterial accessory variability determinant (bAvd) protein, together with a reverse transcriptase, is involved in retrohoming processes as part of a diversity-generating retroelement (DGR), a type of system that is involved in generating sequence variation in bacterial proteins by inserting coding information from a template region into a variable region of a protein coding gene. bAvd forms homopentamers and interacts with the reverse transcriptase as well as with DNA and/or RNA. Pssm-ID: 319868 Cd Length: 106 Bit Score: 48.30 E-value: 5.73e-09
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| 23S_rRNA_IVP_like | cd16377 | 23S rRNA-intervening sequence protein and similar proteins; A family of functionally ... |
28-67 | 5.67e-03 | ||
23S rRNA-intervening sequence protein and similar proteins; A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase. Pssm-ID: 319869 Cd Length: 108 Bit Score: 32.75 E-value: 5.67e-03
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