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Conserved domains on  [gi|1084878970|gb|OGR06577|]
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hypothetical protein A2520_10920 [Deltaproteobacteria bacterium RIFOXYD12_FULL_53_23]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliH COG1317
Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular ...
 51-227 3.34e-29

Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440928 [Multi-domain]  Cd Length: 172  Bit Score: 107.70  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  51 MEEAVEIIRQAGDKAdrlRQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQ 130
Cdd:COG1317     1 MEELEALREEAREEG---YAEGYEEGLEEGRAEAEAEIAEALEQLQALLEQLQAPLEELDEELEEELVELALAIARKVIG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 131 HEVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLEnsrlIEGKNRIQLVEDPNISVGGCFLKTDFGEIDA 210
Cdd:COG1317    78 RELALDPEAILALVREALAALREAEEVTIRVNPDDLELVREALDE----LLGEGGWRLVADPSLARGGCRIETDDGEIDA 153

                         170
                  ....*....|....*..
gi 1084878970 211 TLENCKARLYAAVEQAF 227
Cdd:COG1317   154 SLETRLEELREALLEEL 170
 
Name Accession Description Interval E-value
FliH COG1317
Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular ...
 51-227 3.34e-29

Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440928 [Multi-domain]  Cd Length: 172  Bit Score: 107.70  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  51 MEEAVEIIRQAGDKAdrlRQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQ 130
Cdd:COG1317     1 MEELEALREEAREEG---YAEGYEEGLEEGRAEAEAEIAEALEQLQALLEQLQAPLEELDEELEEELVELALAIARKVIG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 131 HEVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLEnsrlIEGKNRIQLVEDPNISVGGCFLKTDFGEIDA 210
Cdd:COG1317    78 RELALDPEAILALVREALAALREAEEVTIRVNPDDLELVREALDE----LLGEGGWRLVADPSLARGGCRIETDDGEIDA 153

                         170
                  ....*....|....*..
gi 1084878970 211 TLENCKARLYAAVEQAF 227
Cdd:COG1317   154 SLETRLEELREALLEEL 170
fliH PRK06669
flagellar assembly protein H; Validated
 23-212 2.05e-18

flagellar assembly protein H; Validated


Pssm-ID: 235850 [Multi-domain]  Cd Length: 281  Bit Score: 81.60  E-value: 2.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  23 SFEDFWQAKPDSVE-AKKMTKRRSPQEIAMEEAVE-IIRQAGDKADRLRQEAYA----EGKAEGQAAGLAQYAKQLEELA 96
Cdd:PRK06669   68 AFEIVEAAEEEAKEeLLKKTDEASSIIEKLQMQIErEQEEWEEELERLIEEAKAegyeEGYEKGREEGLEEVRELIEQLN 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  97 VLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLEN 176
Cdd:PRK06669  148 KIIEKLIKKREEILESSEEEIVELALDIAKKVIKEISENSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDEL 227

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1084878970 177 SRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDATL 212
Cdd:PRK06669  228 ISLLDNEEHLKIYEDDAISKGGCVIETDFGNIDARI 263
FliH pfam02108
Flagellar assembly protein FliH;
93-213 8.12e-16

Flagellar assembly protein FliH;


Pssm-ID: 426605 [Multi-domain]  Cd Length: 124  Bit Score: 71.09  E-value: 8.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  93 EELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENST-VQIHLHGDDFGRLKk 171
Cdd:pfam02108   1 AQLAQLLEELENPLAELDEQLESQLLDLALDIARQVIRVELSVDPQLILALVREALAALPVLAGkITLRVNPDDLELVR- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1084878970 172 aslENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDATLE 213
Cdd:pfam02108  80 ---EHLGDELSARGWTLVADPSLSRGGCRIETEEGEIDATLE 118
FliH_bacil TIGR03825
flagellar assembly protein FliH; This bacillus clade of FliH proteins is not found by the Pfam ...
 8-226 1.22e-11

flagellar assembly protein FliH; This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.


Pssm-ID: 274803 [Multi-domain]  Cd Length: 255  Bit Score: 62.52  E-value: 1.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970   8 RVVQTAPSLATEDFLSFEDFWQAKPDS-VEAKKMTKRRSPQEIAMEEAVEIIR-QAGDKADRLRQEA----YAEGKAEGQ 81
Cdd:TIGR03825  23 RQVTDVPETEQELADEEQEFEQILEKAeAEAAQIIEQAEAQAAAIREQIEQERaQWEEERERLIQEAkqegYEAGFQAGE 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  82 AAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENSTVQIHL 161
Cdd:TIGR03825 103 SEALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDKNAFQALVRQVLSEVREFDEVSIYV 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1084878970 162 HGDDFGRLKKASLENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDAT----LENCKARLYAAVEQA 226
Cdd:TIGR03825 183 HPHWYERVAAQKDELQSILPACEHLAVYPDEKLPDGGCYVETNFGRIDASvdtqLEQLKEKLLEALKEG 251
 
Name Accession Description Interval E-value
FliH COG1317
Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular ...
 51-227 3.34e-29

Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440928 [Multi-domain]  Cd Length: 172  Bit Score: 107.70  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  51 MEEAVEIIRQAGDKAdrlRQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQ 130
Cdd:COG1317     1 MEELEALREEAREEG---YAEGYEEGLEEGRAEAEAEIAEALEQLQALLEQLQAPLEELDEELEEELVELALAIARKVIG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 131 HEVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLEnsrlIEGKNRIQLVEDPNISVGGCFLKTDFGEIDA 210
Cdd:COG1317    78 RELALDPEAILALVREALAALREAEEVTIRVNPDDLELVREALDE----LLGEGGWRLVADPSLARGGCRIETDDGEIDA 153

                         170
                  ....*....|....*..
gi 1084878970 211 TLENCKARLYAAVEQAF 227
Cdd:COG1317   154 SLETRLEELREALLEEL 170
fliH PRK06669
flagellar assembly protein H; Validated
 23-212 2.05e-18

flagellar assembly protein H; Validated


Pssm-ID: 235850 [Multi-domain]  Cd Length: 281  Bit Score: 81.60  E-value: 2.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  23 SFEDFWQAKPDSVE-AKKMTKRRSPQEIAMEEAVE-IIRQAGDKADRLRQEAYA----EGKAEGQAAGLAQYAKQLEELA 96
Cdd:PRK06669   68 AFEIVEAAEEEAKEeLLKKTDEASSIIEKLQMQIErEQEEWEEELERLIEEAKAegyeEGYEKGREEGLEEVRELIEQLN 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  97 VLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLEN 176
Cdd:PRK06669  148 KIIEKLIKKREEILESSEEEIVELALDIAKKVIKEISENSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDEL 227

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1084878970 177 SRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDATL 212
Cdd:PRK06669  228 ISLLDNEEHLKIYEDDAISKGGCVIETDFGNIDARI 263
FliH pfam02108
Flagellar assembly protein FliH;
93-213 8.12e-16

Flagellar assembly protein FliH;


Pssm-ID: 426605 [Multi-domain]  Cd Length: 124  Bit Score: 71.09  E-value: 8.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  93 EELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENST-VQIHLHGDDFGRLKk 171
Cdd:pfam02108   1 AQLAQLLEELENPLAELDEQLESQLLDLALDIARQVIRVELSVDPQLILALVREALAALPVLAGkITLRVNPDDLELVR- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1084878970 172 aslENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDATLE 213
Cdd:pfam02108  80 ---EHLGDELSARGWTLVADPSLSRGGCRIETEEGEIDATLE 118
fliH PRK05687
flagellar assembly protein FliH;
70-213 7.33e-13

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 65.72  E-value: 7.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  70 QEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAME 149
Cdd:PRK05687   90 QEGLAQGLEQGLAEGQAQAAPQAAQLQALAAQFQEPLALLDSVIESRLVQLALELARQVIGQELKTDPSAILAAIRELLQ 169

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1084878970 150 yvVENST---VQIHLHGDDFGRLKKASLENSRLiegkNRIQLVEDPNISVGGCFLKTDFGEIDATLE 213
Cdd:PRK05687  170 --ALPMFsgkPQLRVNPDDLELVEQLLGAELSL----HGWRLLADPSLHRGGCRISAEEGDVDASLE 230
FliH_bacil TIGR03825
flagellar assembly protein FliH; This bacillus clade of FliH proteins is not found by the Pfam ...
 8-226 1.22e-11

flagellar assembly protein FliH; This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.


Pssm-ID: 274803 [Multi-domain]  Cd Length: 255  Bit Score: 62.52  E-value: 1.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970   8 RVVQTAPSLATEDFLSFEDFWQAKPDS-VEAKKMTKRRSPQEIAMEEAVEIIR-QAGDKADRLRQEA----YAEGKAEGQ 81
Cdd:TIGR03825  23 RQVTDVPETEQELADEEQEFEQILEKAeAEAAQIIEQAEAQAAAIREQIEQERaQWEEERERLIQEAkqegYEAGFQAGE 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  82 AAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQHEVSVNPLVIQACLKKAMEYVVENSTVQIHL 161
Cdd:TIGR03825 103 SEALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDKNAFQALVRQVLSEVREFDEVSIYV 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1084878970 162 HGDDFGRLKKASLENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDAT----LENCKARLYAAVEQA 226
Cdd:TIGR03825 183 HPHWYERVAAQKDELQSILPACEHLAVYPDEKLPDGGCYVETNFGRIDASvdtqLEQLKEKLLEALKEG 251
fliH PRK13386
flagellar assembly protein H; Provisional
 51-225 1.09e-10

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 59.65  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  51 MEEAVEIIRQAGdkadrlRQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQHEESMFALITTMVDRLVQ 130
Cdd:PRK13386   60 LEEGEEEGRQEG------HAAGFAQGRQKGRIEGRQSIRQQFNDAAKPLGALRQQLERYLAEYEQQQRDELLDLVEKVTR 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 131 H----EVSVNPLVIQACLKKAMEYVVEN-STVQIHLHGDDFGRLKKASLEnsrliegknRIQ---LVEDPNISVGGCFLK 202
Cdd:PRK13386  134 QvircELTLQPQQILALVEETLAALPDDpEQLKVHLNPEEFGRLKDLAPE---------KVQawgLVADPSLSAGECRIV 204

                         170       180
                  ....*....|....*....|...
gi 1084878970 203 TDFGEIDAtleNCKARLYAAVEQ 225
Cdd:PRK13386  205 TDTSEADA---GCEHRLDACMDA 224
PRK06328 PRK06328
HrpE/YscL family type III secretion apparatus protein;
52-231 6.22e-09

HrpE/YscL family type III secretion apparatus protein;


Pssm-ID: 180530 [Multi-domain]  Cd Length: 223  Bit Score: 54.41  E-value: 6.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  52 EEAVEIIRQAGDKADRLRQEAYAEGKAEGQAaglaQYAKQLeelavlfASLDGEREAVLKQHEESMFALITTMVDRLVQH 131
Cdd:PRK06328   40 EDSEAYTQETHEECEKLREEAKNQGFKEGSK----AWSKQL-------AFLEEETQKLREQVKEALVPLAIASVKKIIGK 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 132 EVSVNPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDAT 211
Cdd:PRK06328  109 ELELHPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYADSLIISPKADVTPGGCIIETEAGIINAQ 188

                         170       180
                  ....*....|....*....|
gi 1084878970 212 LENckarLYAAVEQAFIAAI 231
Cdd:PRK06328  189 LDV----QLAALEKAFSTIL 204
HrpE_YscL_not TIGR02499
type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, ...
 50-210 9.29e-08

type III secretion apparatus protein, HrpE/YscL family; This model is related to pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108) [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274165 [Multi-domain]  Cd Length: 166  Bit Score: 49.99  E-value: 9.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  50 AMEEAVEIIRQAGDKADRLRQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEREAVLKQheeSMFALITTMVDrlv 129
Cdd:TIGR02499  22 ARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQ---ALEQILGEYDE--- 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 130 qhevsvnPLVIQACLKKAMEYVVENSTVQIHLHGDDFGRLKKASLENSRLIegknRIQLVEDPNISVGGCFLKTDFGEID 209
Cdd:TIGR02499  96 -------PERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLALE----PWELEPDASLAPGACVLETESGVVD 164


                  .
gi 1084878970 210 A 210
Cdd:TIGR02499 165 L 165
PRK06937 PRK06937
HrpE/YscL family type III secretion apparatus protein;
48-231 4.17e-05

HrpE/YscL family type III secretion apparatus protein;


Pssm-ID: 180763 [Multi-domain]  Cd Length: 204  Bit Score: 43.11  E-value: 4.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  48 EIAMEEAVEIIRQAgdkadrlrQEAYAEGKAEGQAAGLAQYAKQLEELAVLFASLDGEreaVLKQHEESMFALITTMVdR 127
Cdd:PRK06937   37 EAARQRAEEIEAEA--------QEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQE---FYRGVEQQMSEVVLEAV-R 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 128 LVQHEVSVNPLVIQAcLKKAMEYVVENSTVQIHLHGDDFGRLKKASLENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGE 207
Cdd:PRK06937  105 KILNDYDDVERTLQV-VREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGCILETEVGI 183

                         170       180
                  ....*....|....*....|....
gi 1084878970 208 IDATLENckarLYAAVEQAFIAAI 231
Cdd:PRK06937  184 IDASLDG----QLEALEQAFHSTI 203
T3SS_SCTL pfam06635
Type 3 secretion system stator protein; This family consists of Type 3 secretion system (T3SS) ...
 74-212 6.46e-04

Type 3 secretion system stator protein; This family consists of Type 3 secretion system (T3SS) stator protein, previously known as nodulation protein NolV, from different Rhizobium species. The function of this family is unclear, however, it has been suggested that this protein is a component of the T3SS, which is used to inject bacterial effector proteins into eukaryotic host cells.


Pssm-ID: 399554  Cd Length: 206  Bit Score: 39.70  E-value: 6.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  74 AEGKAEGQAAGLAQYAKQLEELAVLFAsldgEREAVLkqhEESMFALITTMVDRLVQHEVSVNPLViqACLKKAMEYVVE 153
Cdd:pfam06635  59 AQGRAEGAKAGAEEMARLIAQATCELA----QRKAVL---ERELPQLVFEIVRDLLGAFDSGKMLV--QCVRHAIEQRYK 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1084878970 154 NSTVQIHLHGDDfGRLKKASLENSRLIEGKNRIQLVEDPNISVGGCFLKTDFGEIDATL 212
Cdd:pfam06635 130 NTEVCLHVSPLK-ADLLASEFKDYDGLEGRPKLRIEADPALSADQCVLWSEFGNVDLGL 187
PRK09098 PRK09098
HrpE/YscL family type III secretion apparatus protein;
50-226 5.20e-03

HrpE/YscL family type III secretion apparatus protein;


Pssm-ID: 181646 [Multi-domain]  Cd Length: 233  Bit Score: 37.09  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970  50 AMEEAVEIIRQAGDKADRLRQEAYAEGKAEGQAAGLAQYAKQLEE-LAVLFASLDGEREAVLKQhEESMFALITTMVDRL 128
Cdd:PRK09098   48 ARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEwHARGADHAFAERRAARRM-RERLAEIVAAAVEQI 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1084878970 129 VQHEvsvNPLVIQACLKKAMEYVVENST-VQIHLHGDDfgrLKKASLENSRLIEGKNR---IQLVEDPNISVGGCFLKTD 204
Cdd:PRK09098  127 VLGE---DRAALFARAAQTLERVVDGASyLTVRVHPAD---LDAARAAFGAAAAAGGRnvpVEVVGDPRLAPGACVCEWD 200

                         170       180
                  ....*....|....*....|..
gi 1084878970 205 FGEIDATLENCKARLYAAVEQA 226
Cdd:PRK09098  201 FGVFDASLDTQLRALRRALARA 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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