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Conserved domains on  [gi|1088469351|gb|OHD04154|]
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MAG: DNA-binding protein [Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15]

Protein Classification

heat shock protein HspQ( domain architecture ID 10007984)

heat shock protein HspQ is involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HspQ COG3785
Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];
15-121 8.94e-60

Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 442999  Cd Length: 107  Bit Score: 178.83  E-value: 8.94e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  15 PPIVHSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHaRPDKQQPFYHLLAENGESSYVAYVSQQNLVTDDS 94
Cdd:COG3785     1 MKMIAAKFGIGQVVRHRLFGFRGVIFDVDPEFSNTEEWYEAIPED-RPLKDQPWYHLLAENEESPYHAYVSEQNLVPDES 79

                          90       100
                  ....*....|....*....|....*..
gi 1088469351  95 DEPVDHPAITGMFGAYADGKYRLRPLH 121
Cdd:COG3785    80 GEPVEHPQLDELFESIRDGLYAPRLRL 106
 
Name Accession Description Interval E-value
HspQ COG3785
Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];
15-121 8.94e-60

Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442999  Cd Length: 107  Bit Score: 178.83  E-value: 8.94e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  15 PPIVHSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHaRPDKQQPFYHLLAENGESSYVAYVSQQNLVTDDS 94
Cdd:COG3785     1 MKMIAAKFGIGQVVRHRLFGFRGVIFDVDPEFSNTEEWYEAIPED-RPLKDQPWYHLLAENEESPYHAYVSEQNLVPDES 79

                          90       100
                  ....*....|....*....|....*..
gi 1088469351  95 DEPVDHPAITGMFGAYADGKYRLRPLH 121
Cdd:COG3785    80 GEPVEHPQLDELFESIRDGLYAPRLRL 106
YccV-like smart00992
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
 19-116 5.32e-49

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 214961  Cd Length: 98  Bit Score: 151.62  E-value: 5.32e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351   19 HSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPDKQQPFYHLLAENGESSYVAYVSQQNLVTDDSDEPV 98
Cdd:smart00992   1 HAKFRIGQVVRHKLFGYRGVVFDWDPEFANTEEWYDEIPEDSRPPRDQPFYHVLVENDDSSYVAYVSEQNLEPDTSGEPI 80

                           90
                   ....*....|....*...
gi 1088469351   99 DHPAITGMFGAYADGKYR 116
Cdd:smart00992  81 DHPLLDELFDEFDGGRYV 98
yccV TIGR02097
hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV ...
 19-118 3.79e-44

hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.


Pssm-ID: 131152  Cd Length: 101  Bit Score: 139.43  E-value: 3.79e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  19 HSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPDKQQPFYHLLAENGESS-YVAYVSQQNLVTDDSDEP 97
Cdd:TIGR02097   1 AAKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPLRDQPFYHVLAEDDEGLpYVAYVAEQNLLYDDSDEP 80

                          90       100
                  ....*....|....*....|.
gi 1088469351  98 VDHPAITGMFGAYADGKYRLR 118
Cdd:TIGR02097  81 IEHPQVDELFDGFDEGLQKPR 101
YccV-like pfam08755
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
 20-113 2.17e-38

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 430193  Cd Length: 96  Bit Score: 124.63  E-value: 2.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  20 SRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHaRPDKQQPFYHLLAENGESSYVA--YVSQQNLVTDDSDEP 97
Cdd:pfam08755   1 VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVD-SLGRDQPFYHVLVDNEDGSYVSvrYVAEENLEPDESGEP 79

                          90
                  ....*....|....*.
gi 1088469351  98 VDHPAITGMFGAYADG 113
Cdd:pfam08755  80 IDHPEIGKYFKRFDGG 95
PRK14129 PRK14129
heat shock protein HspQ; Provisional
 20-103 5.86e-12

heat shock protein HspQ; Provisional


Pssm-ID: 184526  Cd Length: 105  Bit Score: 57.41  E-value: 5.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  20 SRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPdKQQPFYHLLAENGESSYV-AYVSQQNLVTDDSDEPV 98
Cdd:PRK14129    4 SKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDEL-RAAPWYHVVMEDDDGQPVhTYLAEAQLSSELQDEHP 82


                  ....*
gi 1088469351  99 DHPAI 103
Cdd:PRK14129   83 EQPSM 87
 
Name Accession Description Interval E-value
HspQ COG3785
Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];
15-121 8.94e-60

Heat shock protein HspQ [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442999  Cd Length: 107  Bit Score: 178.83  E-value: 8.94e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  15 PPIVHSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHaRPDKQQPFYHLLAENGESSYVAYVSQQNLVTDDS 94
Cdd:COG3785     1 MKMIAAKFGIGQVVRHRLFGFRGVIFDVDPEFSNTEEWYEAIPED-RPLKDQPWYHLLAENEESPYHAYVSEQNLVPDES 79

                          90       100
                  ....*....|....*....|....*..
gi 1088469351  95 DEPVDHPAITGMFGAYADGKYRLRPLH 121
Cdd:COG3785    80 GEPVEHPQLDELFESIRDGLYAPRLRL 106
YccV-like smart00992
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
 19-116 5.32e-49

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 214961  Cd Length: 98  Bit Score: 151.62  E-value: 5.32e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351   19 HSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPDKQQPFYHLLAENGESSYVAYVSQQNLVTDDSDEPV 98
Cdd:smart00992   1 HAKFRIGQVVRHKLFGYRGVVFDWDPEFANTEEWYDEIPEDSRPPRDQPFYHVLVENDDSSYVAYVSEQNLEPDTSGEPI 80

                           90
                   ....*....|....*...
gi 1088469351   99 DHPAITGMFGAYADGKYR 116
Cdd:smart00992  81 DHPLLDELFDEFDGGRYV 98
yccV TIGR02097
hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV ...
 19-118 3.79e-44

hemimethylated DNA binding domain; This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.


Pssm-ID: 131152  Cd Length: 101  Bit Score: 139.43  E-value: 3.79e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  19 HSRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPDKQQPFYHLLAENGESS-YVAYVSQQNLVTDDSDEP 97
Cdd:TIGR02097   1 AAKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPLRDQPFYHVLAEDDEGLpYVAYVAEQNLLYDDSDEP 80

                          90       100
                  ....*....|....*....|.
gi 1088469351  98 VDHPAITGMFGAYADGKYRLR 118
Cdd:TIGR02097  81 IEHPQVDELFDGFDEGLQKPR 101
YccV-like pfam08755
Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein ...
 20-113 2.17e-38

Hemimethylated DNA-binding protein YccV like; YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.


Pssm-ID: 430193  Cd Length: 96  Bit Score: 124.63  E-value: 2.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  20 SRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHaRPDKQQPFYHLLAENGESSYVA--YVSQQNLVTDDSDEP 97
Cdd:pfam08755   1 VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVD-SLGRDQPFYHVLVDNEDGSYVSvrYVAEENLEPDESGEP 79

                          90
                  ....*....|....*.
gi 1088469351  98 VDHPAITGMFGAYADG 113
Cdd:pfam08755  80 IDHPEIGKYFKRFDGG 95
PRK14129 PRK14129
heat shock protein HspQ; Provisional
 20-103 5.86e-12

heat shock protein HspQ; Provisional


Pssm-ID: 184526  Cd Length: 105  Bit Score: 57.41  E-value: 5.86e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088469351  20 SRFSIGDVVRHRMFGFRGVVFDIDPVFANSEEWYEAIPEHARPdKQQPFYHLLAENGESSYV-AYVSQQNLVTDDSDEPV 98
Cdd:PRK14129    4 SKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVNDEL-RAAPWYHVVMEDDDGQPVhTYLAEAQLSSELQDEHP 82


                  ....*
gi 1088469351  99 DHPAI 103
Cdd:PRK14129   83 EQPSM 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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