|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
12-629 |
3.09e-66 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 229.33 E-value: 3.09e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 12 VVIASlnAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRRSGIANDIYIRG--QKRDNISVEVDGTKV 89
Cdd:COG1629 5 VVTAT--RTDESLQDVPGSVSVISREQLEDQPATDLGDLLRR-VPGVSVTSAGGGAGQISIRGfgGGGNRVLVLVDGVPL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 90 CGACvnRMDPPVSHILASQIDEIEVIEGPYDVeTFG--TMSGGLKITTKKPTQKLQGEANFGLGSWGYKKVGATISGGEN 167
Cdd:COG1629 82 NDPS--GGDGGLSYIDPEDIERVEVLRGPSSA-LYGsgALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSGGNG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 168 KIRALISASNESSGQYEDGdgntlaqqtklkaplanqfqtqyeniDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDD-- 245
Cdd:COG1629 159 KLAYRLSASYRDSDGYRDN--------------------------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQds 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 246 -------ILYANSKMDAAYD---------DSNIYSVEYAIKDISEiYRDVNLQYYYS----DVEHPMDTRYRNSGAVSYS 305
Cdd:COG1629 213 pgyltlaALRPRGAMDDGTNpysndtddnTRDRYSLSLEYEHLGD-GLKLSASAYYRyddtDLDSDFTPTPADGGTLEQT 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 306 TNHLKTSmqGLKLKNNFEF---DGLKLLVGLDGSRRTWEGEKYSTNVATGVVTPMGIS-LTHTETENSALFAKIEKSFGD 381
Cdd:COG1629 292 DFDNRTY--GLELRLTYDLgfgGKHTLLVGLDYQRQDLDGSGYPLDLGSGSLPTLTSGaDDDGTTTSLALYAQDTYKLTD 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 382 -FKVETGVRVDDTEITPDDATK------HSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP--VVDNITGN 452
Cdd:COG1629 370 kLTLTAGLRYDYVSYDVDDTVTgtdsasGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYAngTDPYSVGN 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 453 QELKQTKNREVDLG--YELKNDLMEFKVKTFYSMLEDYIY---LKHTAPTTYTFENI-DASVYGVEISSSCFATDEITID 526
Cdd:COG1629 450 PDLKPETSTNYELGlrYRLLDGRLSLSLALFYSDVDNEILsvpLPNDSGFSTYYTNAgKARSYGVELELSYQLTPGLSLN 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 527 MSASYKKGK----KENSATQPDKDLADIAPLRGNIALNYEYMNKSVATIEMQASDNWSDIDSNSGEQElSGWAIFNAKVK 602
Cdd:COG1629 530 ASYSYTDAKfdddTDGSADLDGNRLPGVPPLTANLGLTYEFPGGWSLGLGVRYVGDRYLDDANTQGAP-GGYTLVDLGAG 608
|
650 660
....*....|....*....|....*..
gi 1088576378 603 HAFTKNVDFTLGVNNMFDKTYVQSNSY 629
Cdd:COG1629 609 YRFGDNLTLSLGVDNLFDKKYATSLSV 635
|
|
| TonB-copper |
TIGR01778 |
TonB-dependent copper receptor; This model represents a family of proteobacterial ... |
45-659 |
7.16e-62 |
|
TonB-dependent copper receptor; This model represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterized members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa and NosA from Pseudomonas stutzeri which is responsible for providing copper for the copper-containing N2O reducatse. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273801 [Multi-domain] Cd Length: 636 Bit Score: 217.43 E-value: 7.16e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 45 ADLAEALSSsVPSIDMNRRSGIANDIYIRGQKRDNISVEVDGTKVCGACVNRMDPPVSHILASQIDEIEVIEGPYDVETF 124
Cdd:TIGR01778 15 SDGADYLKT-IPGFSAIRKGGSGGDPVFRGQFGSRLNIVTDGGFVLGACPNRMDPPTSYISPESYDSVTVIKGPQTVEYG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 125 GTMSGGLKITTKKPTQ----KLQGEANFGLGSWGY--KKVGATISGGENKIRALISASneSSGQYEDGDGNTLAQQtklk 198
Cdd:TIGR01778 94 PGGSAGTVLFERQPERfdalELYGGASGLRGSNGRfdAYLDAAAGDKSGYIRFIGNYS--DSNDYKDGDGNVVPSS---- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 199 aplanqfqtqyenidaYTKKSvmAKIFVDVTDDQELRLSYTGNRSD-DILYANSKMDAAYDDSNIYSVEYAIKDISEIYR 277
Cdd:TIGR01778 168 ----------------YDKWN--GNLALGWTPDADTVVELSHGASSgEARYAGRGMDASQFRNNSTGLKFAKSNVSDVLE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 278 DVNLQYYYSDVEHPMDtRYR---NSGAVSYSTNHLKTSMQGLKLKNNFEFDGLKLLVGLDGSRRTWEGEKYSTNVatGVV 354
Cdd:TIGR01778 230 KVEAQIYYNYADHIMD-NFRlrtPPAAAMPMQSPVDRRTLGGRLSLTWNHDGMDLVVGVDHQGNQHDARRYRGTV--GAD 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 355 TPMGISLTH-TETENSALFAKIEKSFGDF-KVETGVRVDDTEItpDDATKHSNSYNALNANIITTYSLDKENKIFLGF-- 430
Cdd:TIGR01778 307 DNLQSPWWKdATFLNYGLFAELTWPFAENnRLKAGLRYDRASV--EDGRAHATPNDAMGALAKLTSTDARTDTLMSGFvr 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 431 ----------------GSSSRVPDARELYPVVDNITGNQE----LKQTKNREVDLGYELKNDLMEFKVKTFYSMLEDYIY 490
Cdd:TIGR01778 385 yeqdlwgnqgnfyaglGRAVRFPDYWELFSAKNHNNSADNafdgIKPEKTHQLDFGTQYQGQALKAWVSLFYGVVNDYIL 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 491 LKHTAP-----TTYTfeNIDASVYGVEISSSCFATDEITIDMSASYKKGKKENSatqpDKDLADIAPLRGNIALNYEYMN 565
Cdd:TIGR01778 465 FDYQHSagadgTVAT--NVDARLMGGEAGFSYQFDPHWKTGASLAYAWGHNETD----DQALPQIPPLEARFTLTYEADR 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 566 KSVATI-EMQASDNWSDIDS-NSGEQEL---SGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQSNSyVDLILLSGGAN 640
Cdd:TIGR01778 539 WSFGALwRVVAKQTRIATDSgNVVGKDFdksAGFGTLSLNGAYRPMPNLTLSMGVDNLFDKRYAEHLN-KAGDAGFGFSA 617
|
650
....*....|....*....
gi 1088576378 641 TMLLNEPGRYIYTNLDFKF 659
Cdd:TIGR01778 618 NLQVNEPGRTLWAKLDFEF 636
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
33-659 |
7.91e-49 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 181.11 E-value: 7.91e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 33 IITEVSQK---AQTSADLAEALSSsVPSIDMNRRS-GIANDIYIRGQKRDNISVEVDGTKVCGACVNRMdPPVSHILASQ 108
Cdd:cd01347 1 SVSVITAEdieKQPATSLADLLRR-IPGVSVTRGGgGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRG-VDLNTIPPEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 109 IDEIEVIEGPYDVET-FGTMSGGLKITTKKPTQKLQGEANFGLGSWGY-----KKVGATISGGEN-KIRALISASNESSG 181
Cdd:cd01347 79 IERVEVLKGPSSALYgSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSgssggGGFDVSGALADDgAFGARLYGAYRDGD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 182 QYEDGDGNTLAQQTKLKA-----------PLANQFQTQYENIDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDDIlyan 250
Cdd:cd01347 159 GTIDGDGQADDSDEERYNvagkldwrpddDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDY---- 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 251 skmDAAYDDSNIYSVEYAIKDISeIYRDVNLQYYYSDVEHPMDTRYRNSGAVSYSTNHLKTSMQ------GLKLKNNFEF 324
Cdd:cd01347 235 ---RDRYRKRASLGLEHDLNDTG-WTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSErdttqlGFDAGLNAPF 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 325 DGL----KLLVGLDGSRRTWEgekystnvatgvvtpmgislthteTENSALFAKIEKSFGD-FKVETGVRVDDTEITPDD 399
Cdd:cd01347 311 GTGpvahTLTLGVEYRREELD------------------------EKQTALYAQDTIELTDdLTLTLGLRYDHYDQDSKD 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 400 ----ATKHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP----VVDNITGNQELKQTKNREVDLGYELKN 471
Cdd:cd01347 367 tiagGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGggshGGTAAVGNPNLKPEKSKQYELGLKYDP 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 472 D--LMeFKVKTFYSMLEDYIYLKHTA---PTTYTFENID-ASVYGVEISSSCFATDEITIDMSASYKKGKKENSATQP-D 544
Cdd:cd01347 447 GdgLT-LSAALFRIDIKNEIVSTPTNtglGLVTVYVNGGkARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATtG 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 545 KDLADIAPLRGNIALNYEYMNK--SVATIEMQASDNWSDIDSNSGEQELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKT 622
Cdd:cd01347 526 NRLPGIPKHTANLGLDYELPDEglTAGGGVRYRGKQYADTANGNNTVKVPGYTLVDLSASYQFTKNLTLRLGVNNLFDKD 605
|
650 660 670
....*....|....*....|....*....|....*..
gi 1088576378 623 YVQSNSyvdlillSGGANTMLLNEPGRYIYTNLDFKF 659
Cdd:cd01347 606 YYTSLS-------VRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
225-658 |
4.68e-31 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 127.19 E-value: 4.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 225 FVDVTDDQELRLSYTGNRSDDILYANSKMDAAYDDSNI------YSVEYAIKDISEIYRDVNLQYYYSDVEHPMDTRYR- 297
Cdd:pfam00593 21 YSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTdrkrlsLGYDYDLGDGLSWLSTLRLGLRYSSLDGDYTSNSSg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 298 NSGAVSYSTNHLKTSMQGLKLKNNFEFD-GLKLLVGLD--GSRRTWEGEKYSTNVATGVVTPMGISLTHTETENSALFAK 374
Cdd:pfam00593 101 LSGAGDYLSDDRLYGLYGLDGDLELSLDlSHDLLLGVElrTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTTDSYGLYLQ 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 375 IEKSFGD-FKVETGVRVDDTEITPDD----ATKHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP----- 444
Cdd:pfam00593 181 DNIKLTDrLTLTLGLRYDHYSTDGDDgnggGDNFSRSYSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGsgsgg 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 445 -VVDNITGNQELKQTKNREVDLGYELKNDLMEFKVKTFYSMLEDYIYLKHTAPT----TYTFENID-ASVYGVEISSSCF 518
Cdd:pfam00593 261 gGGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDGPGlggtVYTYTNVGkARIRGVELELSGR 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 519 ATDEITIDMSASYKKGKKENSATQPDKDLADIAPLRGNIALNYEymnKSVATIEMQASDNWSDIDS-----NSGEQELSG 593
Cdd:pfam00593 341 LWGLGLSGGGYTYTDADDDADADDTGNPLPNVPRHTANLGLTYD---FPLGGWGARLGARYVGSGErrygdAANTFKTPG 417
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1088576378 594 WAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQSNSyvdlillSGGANTMLLNEPGRYIYTNLDFK 658
Cdd:pfam00593 418 YTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYS-------SGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
584-659 |
4.31e-09 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 59.66 E-value: 4.31e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1088576378 584 SNSGEQELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQ--SNSYVDLILLSGGANTmlLNEPGRYIYTNLDFKF 659
Cdd:PRK13524 669 TGSATKEVSPYSIVGLSATYDVTKNVSLTGGVDNLFDKRLWRegNAQTTGDLIAGAGAYT--YNEPGRTYYMSLNTHF 744
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
12-629 |
3.09e-66 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 229.33 E-value: 3.09e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 12 VVIASlnAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRRSGIANDIYIRG--QKRDNISVEVDGTKV 89
Cdd:COG1629 5 VVTAT--RTDESLQDVPGSVSVISREQLEDQPATDLGDLLRR-VPGVSVTSAGGGAGQISIRGfgGGGNRVLVLVDGVPL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 90 CGACvnRMDPPVSHILASQIDEIEVIEGPYDVeTFG--TMSGGLKITTKKPTQKLQGEANFGLGSWGYKKVGATISGGEN 167
Cdd:COG1629 82 NDPS--GGDGGLSYIDPEDIERVEVLRGPSSA-LYGsgALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSGGNG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 168 KIRALISASNESSGQYEDGdgntlaqqtklkaplanqfqtqyeniDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDD-- 245
Cdd:COG1629 159 KLAYRLSASYRDSDGYRDN--------------------------SDSDRYNLRAKLGYQLGDDTRLTLSASYSDSDQds 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 246 -------ILYANSKMDAAYD---------DSNIYSVEYAIKDISEiYRDVNLQYYYS----DVEHPMDTRYRNSGAVSYS 305
Cdd:COG1629 213 pgyltlaALRPRGAMDDGTNpysndtddnTRDRYSLSLEYEHLGD-GLKLSASAYYRyddtDLDSDFTPTPADGGTLEQT 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 306 TNHLKTSmqGLKLKNNFEF---DGLKLLVGLDGSRRTWEGEKYSTNVATGVVTPMGIS-LTHTETENSALFAKIEKSFGD 381
Cdd:COG1629 292 DFDNRTY--GLELRLTYDLgfgGKHTLLVGLDYQRQDLDGSGYPLDLGSGSLPTLTSGaDDDGTTTSLALYAQDTYKLTD 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 382 -FKVETGVRVDDTEITPDDATK------HSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP--VVDNITGN 452
Cdd:COG1629 370 kLTLTAGLRYDYVSYDVDDTVTgtdsasGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYAngTDPYSVGN 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 453 QELKQTKNREVDLG--YELKNDLMEFKVKTFYSMLEDYIY---LKHTAPTTYTFENI-DASVYGVEISSSCFATDEITID 526
Cdd:COG1629 450 PDLKPETSTNYELGlrYRLLDGRLSLSLALFYSDVDNEILsvpLPNDSGFSTYYTNAgKARSYGVELELSYQLTPGLSLN 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 527 MSASYKKGK----KENSATQPDKDLADIAPLRGNIALNYEYMNKSVATIEMQASDNWSDIDSNSGEQElSGWAIFNAKVK 602
Cdd:COG1629 530 ASYSYTDAKfdddTDGSADLDGNRLPGVPPLTANLGLTYEFPGGWSLGLGVRYVGDRYLDDANTQGAP-GGYTLVDLGAG 608
|
650 660
....*....|....*....|....*..
gi 1088576378 603 HAFTKNVDFTLGVNNMFDKTYVQSNSY 629
Cdd:COG1629 609 YRFGDNLTLSLGVDNLFDKKYATSLSV 635
|
|
| TonB-copper |
TIGR01778 |
TonB-dependent copper receptor; This model represents a family of proteobacterial ... |
45-659 |
7.16e-62 |
|
TonB-dependent copper receptor; This model represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterized members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa and NosA from Pseudomonas stutzeri which is responsible for providing copper for the copper-containing N2O reducatse. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273801 [Multi-domain] Cd Length: 636 Bit Score: 217.43 E-value: 7.16e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 45 ADLAEALSSsVPSIDMNRRSGIANDIYIRGQKRDNISVEVDGTKVCGACVNRMDPPVSHILASQIDEIEVIEGPYDVETF 124
Cdd:TIGR01778 15 SDGADYLKT-IPGFSAIRKGGSGGDPVFRGQFGSRLNIVTDGGFVLGACPNRMDPPTSYISPESYDSVTVIKGPQTVEYG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 125 GTMSGGLKITTKKPTQ----KLQGEANFGLGSWGY--KKVGATISGGENKIRALISASneSSGQYEDGDGNTLAQQtklk 198
Cdd:TIGR01778 94 PGGSAGTVLFERQPERfdalELYGGASGLRGSNGRfdAYLDAAAGDKSGYIRFIGNYS--DSNDYKDGDGNVVPSS---- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 199 aplanqfqtqyenidaYTKKSvmAKIFVDVTDDQELRLSYTGNRSD-DILYANSKMDAAYDDSNIYSVEYAIKDISEIYR 277
Cdd:TIGR01778 168 ----------------YDKWN--GNLALGWTPDADTVVELSHGASSgEARYAGRGMDASQFRNNSTGLKFAKSNVSDVLE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 278 DVNLQYYYSDVEHPMDtRYR---NSGAVSYSTNHLKTSMQGLKLKNNFEFDGLKLLVGLDGSRRTWEGEKYSTNVatGVV 354
Cdd:TIGR01778 230 KVEAQIYYNYADHIMD-NFRlrtPPAAAMPMQSPVDRRTLGGRLSLTWNHDGMDLVVGVDHQGNQHDARRYRGTV--GAD 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 355 TPMGISLTH-TETENSALFAKIEKSFGDF-KVETGVRVDDTEItpDDATKHSNSYNALNANIITTYSLDKENKIFLGF-- 430
Cdd:TIGR01778 307 DNLQSPWWKdATFLNYGLFAELTWPFAENnRLKAGLRYDRASV--EDGRAHATPNDAMGALAKLTSTDARTDTLMSGFvr 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 431 ----------------GSSSRVPDARELYPVVDNITGNQE----LKQTKNREVDLGYELKNDLMEFKVKTFYSMLEDYIY 490
Cdd:TIGR01778 385 yeqdlwgnqgnfyaglGRAVRFPDYWELFSAKNHNNSADNafdgIKPEKTHQLDFGTQYQGQALKAWVSLFYGVVNDYIL 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 491 LKHTAP-----TTYTfeNIDASVYGVEISSSCFATDEITIDMSASYKKGKKENSatqpDKDLADIAPLRGNIALNYEYMN 565
Cdd:TIGR01778 465 FDYQHSagadgTVAT--NVDARLMGGEAGFSYQFDPHWKTGASLAYAWGHNETD----DQALPQIPPLEARFTLTYEADR 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 566 KSVATI-EMQASDNWSDIDS-NSGEQEL---SGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQSNSyVDLILLSGGAN 640
Cdd:TIGR01778 539 WSFGALwRVVAKQTRIATDSgNVVGKDFdksAGFGTLSLNGAYRPMPNLTLSMGVDNLFDKRYAEHLN-KAGDAGFGFSA 617
|
650
....*....|....*....
gi 1088576378 641 TMLLNEPGRYIYTNLDFKF 659
Cdd:TIGR01778 618 NLQVNEPGRTLWAKLDFEF 636
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
12-612 |
2.36e-58 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 207.40 E-value: 2.36e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 12 VVIASLNAAEVELPKIGIesTIITEVSQKAQTSADLAEALSSsVPSIDMNRRSGIAN--DIYIRGQKRDNISVEVDGTKV 89
Cdd:COG4771 31 VVTATRTEQSLSDAPASV--SVITAEEIEKLGATDLADALRL-LPGVSVTRSGGRGGssGISIRGLGGDRVLVLIDGVPV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 90 CGACV-NRMDppVSHILASQIDEIEVIEGPYDVE-TFGTMSGGLKITTKKPTQKLQGEANFGLGSW--GYKKVGATISGG 165
Cdd:COG4771 108 NNPALgGGGD--LSYIPPDDIERIEVIRGPASALyGSDAIGGVINIITKKPTDELEGSVSLGYGSNgnGTYSGSLSLGGP 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 166 ENKIRALISASNESSGQYEDGDGNTLAqqtklkaplanqfqtqyeNIDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDD 245
Cdd:COG4771 186 GDKLSFLLSGSYRDRDGYLDYRNGGFV------------------GNSGYERYNLNAKLGYRLSDNHRLSLSGGYSRQDR 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 246 ILYANSKMDAAYDDSNIYSVEYAIKDIS-------EIYRDVNLQYYYSDVEHpmDTRYRNSGAVSYSTNHLKTSMQGLKL 318
Cdd:COG4771 248 DGGPPTLGDTEISSDNAGDRDTTTDRGNyslryngDLGDNLDLSLYYSRTDR--DSTNGSLGGSTGSFSDSDDTTYGLEL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 319 KNNFEFDG-LKLLVGLDGSRRTWEGEKYSTNvatgvvtpmgislTHTETENSALFAKIEKSFGD-FKVETGVRVDDTEIT 396
Cdd:COG4771 326 DLTYPLGGnHTLTLGAEYRYDDLDSSSFLGG-------------ADASRDTYGLFAQDEWKLTDkLTLTAGLRYDYYSTF 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 397 pddatkHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYPVVDN-----ITGNQELKQTKNREVDLGYELK- 470
Cdd:COG4771 393 ------GASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGTGtpgryVLGNPDLKPETSDNYELGLEYRl 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 471 -NDLMEFKVKTFYSMLEDYIYLKHTAPTT---YTFENI-DASVYGVEISSSCFATDEITIDMSASYKKGKKENSatQPDK 545
Cdd:COG4771 467 gNGGLSLSLTGFYTDIKDLIVLVPVGPGPgdvLQYENVgKARTYGLELELKYRLGKGLTLTASYTYLDSKIDDG--DTGE 544
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1088576378 546 DLADIAPLRGNIALNYEYMNKSVATIEM-QASDNWSDIDSNSGEQELSGWAIFNAKVKHAFTKNVDFT 612
Cdd:COG4771 545 PLPNVPPHKANLGLDYRLPKWWLLLLLTrYYGGRYVTPPSGRLEGYTPGYTLLDLRASYKLTKNLTLS 612
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
33-659 |
7.91e-49 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 181.11 E-value: 7.91e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 33 IITEVSQK---AQTSADLAEALSSsVPSIDMNRRS-GIANDIYIRGQKRDNISVEVDGTKVCGACVNRMdPPVSHILASQ 108
Cdd:cd01347 1 SVSVITAEdieKQPATSLADLLRR-IPGVSVTRGGgGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRG-VDLNTIPPEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 109 IDEIEVIEGPYDVET-FGTMSGGLKITTKKPTQKLQGEANFGLGSWGY-----KKVGATISGGEN-KIRALISASNESSG 181
Cdd:cd01347 79 IERVEVLKGPSSALYgSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSgssggGGFDVSGALADDgAFGARLYGAYRDGD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 182 QYEDGDGNTLAQQTKLKA-----------PLANQFQTQYENIDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDDIlyan 250
Cdd:cd01347 159 GTIDGDGQADDSDEERYNvagkldwrpddDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTNGDRDWDY---- 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 251 skmDAAYDDSNIYSVEYAIKDISeIYRDVNLQYYYSDVEHPMDTRYRNSGAVSYSTNHLKTSMQ------GLKLKNNFEF 324
Cdd:cd01347 235 ---RDRYRKRASLGLEHDLNDTG-WTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSErdttqlGFDAGLNAPF 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 325 DGL----KLLVGLDGSRRTWEgekystnvatgvvtpmgislthteTENSALFAKIEKSFGD-FKVETGVRVDDTEITPDD 399
Cdd:cd01347 311 GTGpvahTLTLGVEYRREELD------------------------EKQTALYAQDTIELTDdLTLTLGLRYDHYDQDSKD 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 400 ----ATKHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP----VVDNITGNQELKQTKNREVDLGYELKN 471
Cdd:cd01347 367 tiagGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGELYGggshGGTAAVGNPNLKPEKSKQYELGLKYDP 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 472 D--LMeFKVKTFYSMLEDYIYLKHTA---PTTYTFENID-ASVYGVEISSSCFATDEITIDMSASYKKGKKENSATQP-D 544
Cdd:cd01347 447 GdgLT-LSAALFRIDIKNEIVSTPTNtglGLVTVYVNGGkARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGATtG 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 545 KDLADIAPLRGNIALNYEYMNK--SVATIEMQASDNWSDIDSNSGEQELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKT 622
Cdd:cd01347 526 NRLPGIPKHTANLGLDYELPDEglTAGGGVRYRGKQYADTANGNNTVKVPGYTLVDLSASYQFTKNLTLRLGVNNLFDKD 605
|
650 660 670
....*....|....*....|....*....|....*..
gi 1088576378 623 YVQSNSyvdlillSGGANTMLLNEPGRYIYTNLDFKF 659
Cdd:cd01347 606 YYTSLS-------VRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
32-630 |
3.14e-36 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 144.84 E-value: 3.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 32 TIITEVSQKAQTSADLAEALSSsVPSIDMN-RRSGIANDIYIRGQKRDNISVEVDG----TKVCGACVNR--MDPpvshi 104
Cdd:TIGR01785 23 SVISGEQIESKQANNLADALNT-VPGVDVTgGGRPPGQSINIRGLQDNRVLVVVDGarqnYQRGGAHNGSlfVDP----- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 105 laSQIDEIEVIEGP-YDVETFGTMSGGLKITTKKPTQKLQGEANFGL------GSWGYKKVGATISGGEN--KIRALISA 175
Cdd:TIGR01785 97 --ELLKRIEIVKGPsSSLYGSGALGGVVAFRTKDAADLLRPGQLFGGlaklsyGSNNNSFGGSVAVAGRLddNLDALVAA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 176 SNESSGQYEDGDGNtlaqqtklkaPLANqfqtqyeniDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDDILYANSKMDA 255
Cdd:TIGR01785 175 TYRDGGNYRNGNKE----------EATN---------SAYVQKNLLAKLGWQLDDAQRLEFSYFTTEGSLDEAQNSGPGT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 256 AYDDSNIYSVeyaiKDISEIYRDVNLQYYYSDVEHPMDT-------------RYRNSGAVSYStNHLKTSMQGLKLKNNF 322
Cdd:TIGR01785 236 EYVLGSSSTL----LASSTRDRSATLTYNWTPEDNPWLDataslyynrtendNDRSARGVGRE-EGYQYTTYGATLQNTS 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 323 EFDGLK---LLVGLDGSR--RTWEGEKYSTNVATGVVTPMGISLTHtetensALFAKIEKSFGDFKVE--TGVRVD--DT 393
Cdd:TIGR01785 311 RFDVASwstLTYGVDWMKdkRRTESFDPNSVTTIVPNPPSAKEYFF------GLFLQDNIPLLDDRLTlsAGLRYDhyKL 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 394 EITPDDATKHSN-SYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELY--------PVVDNITGNQELKQTKNREVD 464
Cdd:TIGR01785 385 SPKTTADTEAVDrSYSRWSPSLGLSYKPVDWLTLYASYSQGFRAPSIDELYgtgdhpgtPGGYTFAPNPNLKPETSKTWE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 465 LGYELK-------NDLMEFKVKTFYSMLEDYIYLKHTAP--------TTYTFENID-ASVYGVEISSScFATDEITIDMS 528
Cdd:TIGR01785 465 LGANLSfdnllldNDQLQFKVAYFYNDVKDFIDLTIGVTdnvtagmnNITQYVNIDgARIRGIEASAS-YDAGLWATGLS 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 529 ASYKKGKKENSaTQPdkdLADIAPLRGNIALNYEYMNKSV---ATIEMQASDNWSDIDSNSGEQEL---SGWAIFNAKVK 602
Cdd:TIGR01785 544 YGYTIGKDQNT-NQW---LSNIPPLKLVVTVGYRFPDRRLdlgAKAAYYERQSESPTTEDVAANGLlttPGYTVVDLYAT 619
|
650 660 670
....*....|....*....|....*....|
gi 1088576378 603 HAFT--KNVDFTLGVNNMFDKTYVQSNSYV 630
Cdd:TIGR01785 620 YQPNavKGLTVRFGVNNLTDRKYTPAQSVP 649
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
225-658 |
4.68e-31 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 127.19 E-value: 4.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 225 FVDVTDDQELRLSYTGNRSDDILYANSKMDAAYDDSNI------YSVEYAIKDISEIYRDVNLQYYYSDVEHPMDTRYR- 297
Cdd:pfam00593 21 YSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTdrkrlsLGYDYDLGDGLSWLSTLRLGLRYSSLDGDYTSNSSg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 298 NSGAVSYSTNHLKTSMQGLKLKNNFEFD-GLKLLVGLD--GSRRTWEGEKYSTNVATGVVTPMGISLTHTETENSALFAK 374
Cdd:pfam00593 101 LSGAGDYLSDDRLYGLYGLDGDLELSLDlSHDLLLGVElrTAGLDYRRLDDDAYDPYDPANPSSSSYSDTTTDSYGLYLQ 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 375 IEKSFGD-FKVETGVRVDDTEITPDD----ATKHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARELYP----- 444
Cdd:pfam00593 181 DNIKLTDrLTLTLGLRYDHYSTDGDDgnggGDNFSRSYSAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGELYGsgsgg 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 445 -VVDNITGNQELKQTKNREVDLGYELKNDLMEFKVKTFYSMLEDYIYLKHTAPT----TYTFENID-ASVYGVEISSSCF 518
Cdd:pfam00593 261 gGGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDGPGlggtVYTYTNVGkARIRGVELELSGR 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 519 ATDEITIDMSASYKKGKKENSATQPDKDLADIAPLRGNIALNYEymnKSVATIEMQASDNWSDIDS-----NSGEQELSG 593
Cdd:pfam00593 341 LWGLGLSGGGYTYTDADDDADADDTGNPLPNVPRHTANLGLTYD---FPLGGWGARLGARYVGSGErrygdAANTFKTPG 417
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1088576378 594 WAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQSNSyvdlillSGGANTMLLNEPGRYIYTNLDFK 658
Cdd:pfam00593 418 YTLVDLSAGYRLNKNLTLRLGVNNLFDKYYKRYYS-------SGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| TonB-hemlactrns |
TIGR01786 |
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ... |
18-659 |
3.00e-30 |
|
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273808 [Multi-domain] Cd Length: 715 Bit Score: 126.76 E-value: 3.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 18 NAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRR-SGIANDIYIRGQKRDNISVEVDG---------T 87
Cdd:TIGR01786 12 DPQRRDLSVTPASVSVISREQLKSQQVRNLRDLLRY-EPGVSVVEGgRGGSQGINIRGLDKNRVAVLVDGirqntsyggQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 88 KVCGACVNRMDPpvshilaSQIDEIEVIEGPYDVET-FGTMSGGLKITTKKPTQKLQGEANFGLGSW-GYK------KVG 159
Cdd:TIGR01786 91 GSTFYAINSIDP-------ELIKSIEIVKGASSSLYgSGALGGVVAFRTKDAADLLKPGKDLGGLSKlGYSsannrfTQS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 160 ATISGGENKIRALISASNESSGQYEDGDGNTLAQQTKLKAPlanqfqtqyeNIDAYTKKSVMAKIFVDVTDDQELRLSYT 239
Cdd:TIGR01786 164 VAAAGRNDDVDALVQATYRRGHELKNGNKANIGNESKRSKP----------NPSDYKSQSFLAKLGWQLNDAHRLGLSLE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 240 G----NRSDDILYANSKMDAAYDDSNIYSVEYAIKDIseIYRDVNLQYYYSDvehpmDTRYRNSGAVSYSTNHLKTS--- 312
Cdd:TIGR01786 234 YtqtdYDEPEMTNTSYLTKPLGAPLLSSTVVLGDSKT--RDRRTGLDYELNP-----DNSWLDTVKLALDKQYIQLYnyl 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 313 ------------------------MQGLKLKNNFEFDGLKLLVGL-----------DGSRRTWEGEKYSTNVATGVVTPm 357
Cdd:TIGR01786 307 natsasdypgvdkngrykdkydyyTLGFDTNNKIEFSVHSLSLTYgldrfkdkvstGDSRRNLPTAAYNLYGYEGENRP- 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 358 gislthTETENSALFAKIEKSFGD-FKVETGVRVDDTEITPD-DATKH----SNSYNALNANIITTYSLDKENKIFLGFG 431
Cdd:TIGR01786 386 ------VKGSNFGLFLQDNIKLGDwLSLSAGLRYDHYKTDPKaDESKDygaiSKTYSRWSPSLGLTYKPTPWLTLYYSYS 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 432 SSSRVPDARELYPVVDNITG-------NQELKQTKNREVDLGYELKNDLMEFKVKTFYSMLEDYIYLKHTAP-------- 496
Cdd:TIGR01786 460 QGFRAPSFDELYGTGAHPGGgpytflpNPNLKPETSKNWEIGINLHFDQLDFKVSYFRNDYKDFIDLGIGVTakgnmaqv 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 497 ---TTYTFENID-ASVYGVEISSS------CFATDEITIDMSASYKKGKKENSatqpDKDLADIAPLRGNIALNYEYMN- 565
Cdd:TIGR01786 540 gsnTITNYVNIDnARIRGIELSGRydlgsfFSGPDGWTTTLKYGYTKGKDSDT----NPWLNAITPLKVVLGLGYDHPDe 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 566 KSVATIEMQASDNWSDIDSNSGEQE-----------LSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQSNSYvdlil 634
Cdd:TIGR01786 616 KWGVGLTLTFSGAKDAVDAYATYYEngeaakagplrTPSYTVVDLYGYYKPNKNLTLRFGVYNLLDRKYTTWESA----- 690
|
730 740
....*....|....*....|....*
gi 1088576378 635 LSGGANTMLLNEPGRYIYTNLDFKF 659
Cdd:TIGR01786 691 RQAGPLATGYTAPGRNYKASVEYKF 715
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
9-624 |
1.24e-26 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 115.41 E-value: 1.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 9 LSLVVIASLNAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRRSGIAND--IYIRG---QKRDNISVE 83
Cdd:COG4772 23 LETVVVTGSRAAEARLKDVPGSVSVVDREELENQAATSLREVLRR-VPGVNVQEEDGFGLRpnIGIRGlgpRRSRGITLL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 84 VDG----TKVCGACVNRMDPPvshilASQIDEIEVIEGPYDVeTFGTMS-GG-LKITTKKPTQKLQGEANFGLGSWGYKK 157
Cdd:COG4772 102 EDGipiaPAPYGDPAAYYFPD-----LERMERIEVLRGAAAL-RYGPQTvGGaINFVTRTIPTAFGGELRVTGGSFGYRR 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 158 VGATISGGENKIRALISASNESSGQYEDgdgNTlaqqtklkaplanqfqtqyenidAYTKKSVMAKIFVDVTDDQELRLS 237
Cdd:COG4772 176 THASVGGTVGNFGYLVEYSRKRGDGFRD---NS-----------------------GFDINDFNAKLGYRLSDRQELTLK 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 238 YTGNRSDDILY--------------ANSKMDAAYDDSNIYSVEYAIkDISEiYRDVNLQYYYSDVE----HPMDTRYRNS 299
Cdd:COG4772 230 FQYYDEDANTPggltdaqfdadprqSYRPADQFDTRRTQLSLRYEH-QLSD-NTTLTTTAYYNDFSrnwyIRQNTADPNT 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 300 GAVSYSTNHLKTSMQG--LKLKNNFEFDGLK--LLVGL-----DGSRRTWEGEKYSTNVATGVVtpmgiSLTHTETENSA 370
Cdd:COG4772 308 PGLGLRGNPRGYRSYGiePRLTHRFELGGVPhtLEVGLryhreEEDRKQYVNTYGQGRSGAGLR-----RDRRFSADALA 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 371 LFA--KIEKSfGDFKVETGVRVDDTEITPDDATKH--------SNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDAR 440
Cdd:COG4772 383 AYAqnRFELT-GRLTLTPGLRYEHIRRDRTDRYSTrtggddsgSNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEPPTFG 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 441 ELYPVVdniTGNQELKQTKNREVDLG--YELKNDLmEFKVKTFYSMLEDYIYLKHTAPTTY-TFENIDAS-VYGVEIS-- 514
Cdd:COG4772 462 DLAYGN---GGNPDLKPEKSWNYELGtrGRIGNGL-SAEVALFYIDYDNELGSCSAAGGDRsTFTNAGETrHQGLELAld 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 515 --SSCFATDEITIDMSASYKKGKKENSATQP--DKDLADIAPLRGNIALNYEYmNKSVATIEMQA-SDNWSDiDSNSGE- 588
Cdd:COG4772 538 ydLLKGGGLGLPLFAAYTYTDAEFTSDFGPVfaGNRLPYVPRHQLTAGLGYEH-GGWTANLNGRYvSEQFTD-AANTVAd 615
|
650 660 670
....*....|....*....|....*....|....*....
gi 1088576378 589 ---QELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYV 624
Cdd:COG4772 616 gsfGKIPSYTVLDLSASYDFGKNLSLFAGVNNLFDKRYI 654
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
34-659 |
1.70e-22 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 102.26 E-value: 1.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 34 ITEVSQK---AQTSADLAEALSSsVPSIDMNR-RSGIANDIYIRGQkRDNISVEVDGTKvcgacvnrmDPPVSHILASQI 109
Cdd:COG4774 13 VTVVTRElieDQGATSLADALRN-VPGVTFGAgEGGNGDSFSIRGF-SASGDIYVDGLR---------DPGQYRRDTFNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 110 DEIEVIEGPYDVeTFGTMSGG--LKITTKKPTQKLQGEANFGLGSWGYKKVGATISG--GEN-KIRAlisasnesSGQYE 184
Cdd:COG4774 82 ERVEVLKGPASV-LYGRGSPGgvINLVTKRPTDEPFTEVTLTYGSDGQRRATLDVNGplGDDlAYRL--------NGMYR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 185 DGDGntlaqqtklkaplanqfQTQYENIDAYtkkSVMAKIFVDVTDDQELRLSYTGNRSDDI------LYANSK------ 252
Cdd:COG4774 153 DSDS-----------------YRDGVDNDRW---GIAPSLTWRLGDRTRLTLDYEYQDDDRTpdygvpAVANGRpvdvdr 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 253 -----MDAAYDDSNIYSVEYAIK-DISE--------IYRDVNLQYYYSDVEHPMDTR-YRNSGAVSYSTNHLKTSMQGLK 317
Cdd:COG4774 213 stfygQPDDYSDSETDSATLRLEhDFNDnwtlrnalRYSDYDRDYRNTYPTGGNATGtVTRSAYRRDQDNDTLSNQTDLT 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 318 LKnnFEFDGLK--LLVGLDGSRRTWEGEKYSTNVATGVVT-------------PMGISLTHTETENSALFAKIEKSFGD- 381
Cdd:COG4774 293 GK--FDTGGVKhtLLAGVEYSREDSDNARYSGGGTAPTVNlynpvygapvtgpTLGGADNDSRTDTTGLYLQDTISLTDr 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 382 FKVETGVRVDDTEITPDD----ATKHSNSYNALNANIITTYSLDKENKIFLGFGSSSRVPDArelYPVVDNitGNQELKQ 457
Cdd:COG4774 371 WSLLAGLRYDRFDTDYTDrttgATTSSYDDSAFSPRAGLVYKPTPNLSLYASYSTSFNPGGG---APSLSN--AGQALDP 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 458 TKNREVDLGyeLKNDLMEFKVKT---FYSMLEDYIYLKHTAPTTYTFENIDASVYGVEISSSCFATDEITIDMSASYKKG 534
Cdd:COG4774 446 EKSRQYEVG--VKWDLLDGRLSLtaaLFRIEKTNVRTTDPANPGVYVQTGEQRSRGVELEATGELTPGWSVLAGYTYLDA 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 535 K--KENSATQPDKDLADIAPLRGNIALNYEYMNKSVaTIEMQA---SDNWSDiDSNSgeQELSGWAIFNAKVKHAFTKNV 609
Cdd:COG4774 524 EitKSANAANVGNRLPNVPRHSASLWTTYDLPLPGL-TLGGGVryvGSRYAD-AANT--VKLPSYTRFDAGASYRLNKNL 599
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1088576378 610 DFTLGVNNMFDKTYVQSnsyvdlillSGGANTMLLNEPgRYIYTNLDFKF 659
Cdd:COG4774 600 TLRLNVNNLTDKRYYAS---------AYGSGYVTPGAP-RTVLLSASYRF 639
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
39-629 |
5.50e-21 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 97.66 E-value: 5.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 39 QKAQTsadLAEALSSsVPSIDMNRRSGIAND-IYIRGQKRDNISVevDGTKVCGACVNRMDPpvshilaSQIDEIEVIEG 117
Cdd:COG4773 80 QGATT---LDDALRN-VPGVTVSSYDGGGRDsFSIRGFSIDNYLR--DGLPLGGFGGGQPDT-------ANLERVEVLKG 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 118 PYDVeTFGTMS-GGL-KITTKKPTQKLQGEANFGLGSWGYKKVGATISG---GENKIRALISASNESSGQYEDGDGNT-- 190
Cdd:COG4773 147 PAGL-LYGAGSpGGLvNLVTKRPTAEPQGEVSLSAGSWDTYRATADVGGplnEDGTLRYRLNAAYEDGDSFRDGVDNRrt 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 191 ---------LAQQTKLkaplanQFQTQYENIDAytkKSVMAKIFVDVTDdqeLRLSYTGNRSDDILYANSKMDAAYddsn 261
Cdd:COG4773 226 liapsldwdLTDDTTL------TLGAEYQDDDS---TGDRGFLPLDGTL---LDLPRSTNLGEPWDYYDTETTTLF---- 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 262 iYSVEYAI-KDISeiyrdVNLQYYYSDVE------HPMDTRYRNSGAVSYSTNHLKTSMQGLKLKNN----FEFDGLK-- 328
Cdd:COG4773 290 -AELEHRFnDDWS-----LRANARYSDSDrdgrsaYAYGAPDAATGTLTRYASARDGDSRSDSLDANlngkFETGGLEht 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 329 LLVGLDGSRRTWEGEKYST------NVATGVVTPMGI--SLTHTETENSALFAKIEKSFGD-FKVETGVRVDDTEITPDD 399
Cdd:COG4773 364 LLVGADYSRYDSDSDSATAgtiniyNPVYGNLPEPDFdaSDTDTTTRQTGLYAQDQISLTDrLSLLLGGRYDWYETDSTN 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 400 ATKHSNSYNALNAniIT-----TYSLDKENKIFL----GFGSSSRVPDARELYpvvDNITGNQelkqtknrevdlgYE-- 468
Cdd:COG4773 444 RLGGSTTSYDDSA--FTpraglVYDLTPGLSLYAsyseSFEPQSGADNNGNPL---DPETGKQ-------------YEag 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 469 LKNDLMEFKVKT---FYSMLEDYIYLKHTAPTTYTFENIDASVYGVEISSSCFATDEITIDMSASYKKGKKENSATQPD- 544
Cdd:COG4773 506 VKGELFDGRLNAtlaVFDITQKNVATTDPDNPNFYVQVGEVRSRGVELELSGELTPGLNLIAGYTYTDAKITKDADALEg 585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 545 KDLADIAPLRGNIALNYEymnksVATIEMQ----------ASDNWSDidsNSGEQELSGWAIFNAKVKHAFTKNVDFTLG 614
Cdd:COG4773 586 KRLTNVPRHTASLWTTYR-----FPSGALKglglgggvryVGERYGD---AANTFTLPSYTLVDAGARYDLGKNWTLQLN 657
|
650
....*....|....*
gi 1088576378 615 VNNMFDKTYVQSNSY 629
Cdd:COG4773 658 VNNLFDKKYYASSGS 672
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
12-301 |
6.54e-21 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 93.01 E-value: 6.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 12 VVIAslNAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRRS--GIANDIYIRGQKRDNISVEVDGTKV 89
Cdd:COG4206 2 VVTA--TRLEQSKSDLTGSVTVIDAEELERSGATSLADALRR-VPGVQVSSSGgpGSAASISIRGLGSNQTLVLIDGVPL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 90 CGACVNRMDppVSHILASQIDEIEVIEGPYDVeTFGT--MSGGLKITTKKPTQKLQGEANFGLGSWGYKKVGATISGGEN 167
Cdd:COG4206 79 NDPSLGGVD--LSLIPPDDIERIEVLKGAASA-LYGSdaIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGGAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 168 KIRALISASNESSGQYEDGDGNtlaqqtklkaplanqfqtqYENIDAYTKKSVMAKIFVDVTDDQELRLSYTGNRSDDIL 247
Cdd:COG4206 156 KFSYSLSASYRRSDGYRYNDPD-------------------LRNNDGYENTSLNARLGYKLGDNGSLSLSGGYSDSERGY 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1088576378 248 YANSKMDAAYDDSNIYSVEYAIKDISEIYRDVNLQYYYSDVEHPMDTRYRNSGA 301
Cdd:COG4206 217 PGAVGSDRNLRLSLSLEYKLSDGWSLLLLAYYYYDRDYEDGGGDSAGTSNTDGA 270
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
42-659 |
2.02e-19 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 92.48 E-value: 2.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 42 QTSADLAEALSSsVPSIDMNRRSGIAN--DIYIRG--QKRDNISVEVDGTKVCGACVN-RMDPpvshilaSQIDEIEVIE 116
Cdd:TIGR01783 17 QQAGSLSEALQR-VPGVVVGGSGGTTQfgNITIRGfgLEVDIDNVYLDGVPLLSRGNLaIVDP-------AMVERVEVLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 117 GPYDVETFGTMSGGL-KITTKKPTQKLQGEANFGLGSWGYKKVGATIS---GGENKIRALISASNESSGQYEDGDGN-TL 191
Cdd:TIGR01783 89 GPASLLYGGSAPGGViNIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGgplGADGTFRGRLNGARQDGDSFYDGAGEeTR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 192 AQQTKLKAPLA----NQFQTQYENIDAYTKKSVMAKIfvdvTDDQELRLSYTGNRSDDilyanskMDAAYDDSNIYSVEY 267
Cdd:TIGR01783 169 LGATATDWQLDdrtlLRLGAYYQKERDRGGYGGLPAS----GGTSGRDLSSDRYLGTS-------SNRNYDDREYLSYGL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 268 AIKDISE--IYRDVNLQYYYSDV--EHPMDTRYRNSG---AVSYSTNHLKTSMQGLKLKNNFEFDG----LKLLVGLDGS 336
Cdd:TIGR01783 238 SLEYQFNdvWTGKQNLRYSYFDTdsNQVQASGYSSDGglfGRSLTVVNVKQDRVQIDAGLDGEFETgpieHDLLLGVSYG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 337 RRT---------WEGEKYSTNVATGVVTPMGIS------LTHTETENS-ALFAKIekSFGDFKVETGVRVDDTEITPDDA 400
Cdd:TIGR01783 318 QRTtnrfnntgyPSDNIYSLTATSSARTDIGDSpkdralSSTTKALNGvALQRIL--LADKWTLTLGGRYDSVDVKSNNG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 401 TKHS---NSYNALNANIITTYSLDKENKIFLGFGSSSRVPDARElyPVVDNITGNQELKQTKNREVDLGYELKND-LMEF 476
Cdd:TIGR01783 396 VAGStgkRDDSQFTPSLGVAYKPTDDWSLYASYAESFKPGGYYP--KGAGNSGDILEPEKGKNYELGVRYDLGDSlLATA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 477 kvkTFYSMLEDYIYLKHTAPTTYTFENIDASVYGVEISSSCFATDEITIDMSASY--KKGKKENSATQPDKDLADIAPLR 554
Cdd:TIGR01783 474 ---ALFRITKDNQLVQDPVNGTFSVNAGKTRNRGVELEARGYLTPGLSLSAGYTYtdAEFTEDTNGDTQGNTVPFVPKHT 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 555 GNIALNYEYMNKSvATIEMQASDNWSD--IDSNSGEQELSGWAIFNAKVKHAFTKNVDFT--LGVNNMFDKTYVQSNSYV 630
Cdd:TIGR01783 551 ASLWASYAPPVGD-NGLTLGGGVQYTGkaYVDGGNTGKVPSYTVVDLSVRYDLTKKKNLTlaLNVNNLFDRDYYTSGYRW 629
|
650 660
....*....|....*....|....*....
gi 1088576378 631 dlillsgGANTMLLNEPGRYIYTNLDFKF 659
Cdd:TIGR01783 630 -------GPSAYIYPGAPRTVGLSVSYDF 651
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
584-659 |
4.31e-09 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 59.66 E-value: 4.31e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1088576378 584 SNSGEQELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKTYVQ--SNSYVDLILLSGGANTmlLNEPGRYIYTNLDFKF 659
Cdd:PRK13524 669 TGSATKEVSPYSIVGLSATYDVTKNVSLTGGVDNLFDKRLWRegNAQTTGDLIAGAGAYT--YNEPGRTYYMSLNTHF 744
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
10-659 |
5.55e-08 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 56.05 E-value: 5.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 10 SLVVIASlnAAEVELPKIGIESTIITEVSQKAQTSADLAEALSSsVPSIDMNRRSGIANDIYIRGQKRDNISVEVDGTKV 89
Cdd:PRK10064 32 TMVVTAS--AVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKE-VPGVQLTNEGDNRKGVSIRGLDSSYTLILIDGKRV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 90 CG--ACVNRMDPPVSHILASQIDEIEVIEGP----YDVETFGtmsGGLKITTKKPTQKLQGEANFGLGSWGYKKVGATIS 163
Cdd:PRK10064 109 NSrnAVFRHNDFDLNWIPVDAIERIEVVRGPmsslYGSDALG---GVVNIITKKIGQKWHGTVTVDTTIQEHRDRGDTYN 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 164 GGENKIRALIsasNESSGQYEDGdgnTLAQQTKLK-APLANQFQTQYENIDAYTKKSVMAKIFVDVTDDQELRLSYTGNR 242
Cdd:PRK10064 186 GQFFTSGPLI---DGVLGMKAYG---SLAKREKDDpQNSTTTDTGETPRIEGFTSRDGNVEFAWTPNQNHDFTAGYGFDR 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 243 SDdilYANSKMDAAYDDSNIYSVEYAIKdisEIYRDVNLQYYYSDVEHpmdtryRNSGAVSYSTNHlKTSMQGlklKNNF 322
Cdd:PRK10064 260 QD---RDSDSLDKNRLERQNYSLSHNGR---WDYGNSELKYYGEKVEN------KNPGNSSPITSE-SNSIDG---KYTL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 323 EFDGLKLLVGLDGSrrtWEGEKYSTnvatgVVTPMGISLTHTETENSALFAKIE-KSFGDFKVETGVRVDDTEITPDdat 401
Cdd:PRK10064 324 PLTAINQFLTFGGE---WRHDKLSD-----AVNLTGGTSSKTSASQYALFVEDEwRIFEPLALTTGVRMDDHETYGD--- 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 402 khsnsYNALNANIIttYSLDKENKIFLGFGSSSRVPDARELYPVVDN--------ITGNQELKQTKNREVDLGY-----E 468
Cdd:PRK10064 393 -----HWSPRAYLV--YNATDTVTVKGGWATAFKAPSLLQLSPDWTSnscrgackIVGSPDLKPETSESWELGLyymgeE 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 469 LKNDLMEFKVKTFYSMLEDYIYLKHT-----APT-----------------TYTFENID-ASVYGVEISSSCFATDEITI 525
Cdd:PRK10064 466 GWLEGVESSVTVFRNDVDDRISISRTsdvnaAPGyqnfvgfetngrgrrvpVFRYYNVNkARIQGVETELKIPFNDEWKL 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 526 DMSASYKKGKkENSATQpDKDLADIAPLRGNIALNYEYMNKSVATIEMQASDNWSDIDSNSGEQELSGWAIFNAKVKHAF 605
Cdd:PRK10064 546 SLNYTYNDGR-DVSNGE-NKPLSDLPFHTANGTLDWKPLALEDWSFYVSGNYTGQKRADSATAKTPGGYTIWNTGAAWQV 623
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 1088576378 606 TKNVDFTLGVNNMFDKTyVQSNSYVdlillsggantmlLNEPGRYIYTNLDFKF 659
Cdd:PRK10064 624 TKDVKLRAGVLNLGDKD-LSRDDYS-------------YNEDGRRYFMAVDYRF 663
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
574-659 |
6.84e-08 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 55.92 E-value: 6.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 574 QASDNWSDIDSNSGEQELSGWAIFNAKVKHAFTKNVDFTLGVNNMFDKT-YVQSNsyvdlillsgGANTMllNEPGRYIY 652
Cdd:PRK13528 653 THAESRSEETGGLSGKELGAYSLVGVNVNYDINKNLRLNVGVSNLFDKQiYREGE----------GANTY--NEPGRAYY 720
|
....*..
gi 1088576378 653 TNLDFKF 659
Cdd:PRK13528 721 AGVTASF 727
|
|
| OMP_b-brl_3 |
pfam14905 |
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ... |
366-516 |
1.89e-07 |
|
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.
Pssm-ID: 434300 [Multi-domain] Cd Length: 407 Bit Score: 53.82 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 366 TEN-SALFAKIEKSFGDFKVETGVRVDDTEITPDDAT---KHSNSYNALNANIITTYSLDKENKIFLGFGSSSRV--PDA 439
Cdd:pfam14905 111 KENiYAAYASYSKKFGKWSYQAGLRAEYTDIDGDSVTtneTFKRNYFNLFPSASLSYKLNDNNSLQLSLYYRRIInrPSY 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 440 RELYPVVDNI------TGNQELKQTKNREVDLGYELKNDLM---------EFKVKTFYSMLEDYIylkhtapTTYTFENI 504
Cdd:pfam14905 191 WDLNPFRNYSdpynysQGNPNLKPEYTNSFELGYTYKWKLSlslsyrytnDVIQQTFITDDNDNV-------TYTTYENL 263
|
170
....*....|...
gi 1088576378 505 DAS-VYGVEISSS 516
Cdd:pfam14905 264 GKSnSYGLELSAS 276
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
40-130 |
6.43e-06 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 45.34 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 40 KAQTSADLAEALSSsVPSIDM-NRRSGIANDIYIRGQKRDNISVEVDGTKVCGAcvNRMDPPVSHILASQIDEIEVIEGP 118
Cdd:pfam07715 18 EDQGATNLADALRG-VPGVSVsSGGGGGGSSISIRGFGSNRVLVLVDGVPLNSG--GGGSVDLNSIDPEDIERVEVLKGP 94
|
90
....*....|..
gi 1088576378 119 YDVEtFGTMSGG 130
Cdd:pfam07715 95 ASAL-YGSGAIG 105
|
|
| PRK09840 |
PRK09840 |
catecholate siderophore receptor Fiu; Provisional |
32-157 |
6.28e-03 |
|
catecholate siderophore receptor Fiu; Provisional
Pssm-ID: 182105 [Multi-domain] Cd Length: 761 Bit Score: 39.79 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1088576378 32 TIITEVSQKAQTSADLAEALSSsVPSIDM-----NRRSGIANDIYIRGQKRDNiSVEVDGTKVCGACVNRMdppvshila 106
Cdd:PRK09840 76 TVISEQVIKDQGATNLTEALRN-VPGVGTffageNGNTTTGDAIYMRGFDTSN-SIYVDGIRDIGSISRDT--------- 144
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1088576378 107 SQIDEIEVIEGPYDVET-FGTMSGGLKITTKKPTQKLQGEANFGLGSWGYKK 157
Cdd:PRK09840 145 FNTEQVEVIKGPSGTDYgRSAPTGSINMISKQPRNDSGIDASASIGSAWFRR 196
|
|
| |
