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Conserved domains on  [gi|1093038256|gb|OHW90631|]
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protein required for cell [Colletotrichum incanum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 541-652 4.93e-31

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


:

Pssm-ID: 463059  Cd Length: 112  Bit Score: 117.57  E-value: 4.93e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093038256 541 YKLALEYITqaDNPPPIRSEGLNLISGLVASN--STVLDVQATLVLLSSLLQDSEDFINLRVVKLFTQLASKHPKATTQE 618
Cdd:pfam10363   1 LQEALKDLN--DPLVPVRAHGLVLLRKLIEKKdpSPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1093038256 619 LLEHYLDAKETSTTDVRLRFGEALVQVIERLGET 652
Cdd:pfam10363  79 LLEEYGDLNEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 819-852 1.32e-11

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


:

Pssm-ID: 431206  Cd Length: 34  Bit Score: 59.73  E-value: 1.32e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1093038256 819 SREDITRTLKYVAVTDNDGLVQQHARDVIESLEA 852
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
DUF3752 super family cl13947
Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is ...
 3-41 6.27e-03

Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is typically between 140 and 163 amino acids in length.


The actual alignment was detected with superfamily member pfam12572:

Pssm-ID: 463632  Cd Length: 150  Bit Score: 38.05  E-value: 6.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1093038256   3 TDTPgTDRQSKLADEVLNAGKRAFDPSADATSREAARKE 41
Cdd:pfam12572  38 TETP-EEKQQRLADEVLGRRRRAAAAAADEGRKRKRRDE 75
 
Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 541-652 4.93e-31

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


Pssm-ID: 463059  Cd Length: 112  Bit Score: 117.57  E-value: 4.93e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093038256 541 YKLALEYITqaDNPPPIRSEGLNLISGLVASN--STVLDVQATLVLLSSLLQDSEDFINLRVVKLFTQLASKHPKATTQE 618
Cdd:pfam10363   1 LQEALKDLN--DPLVPVRAHGLVLLRKLIEKKdpSPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1093038256 619 LLEHYLDAKETSTTDVRLRFGEALVQVIERLGET 652
Cdd:pfam10363  79 LLEEYGDLNEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 819-852 1.32e-11

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


Pssm-ID: 431206  Cd Length: 34  Bit Score: 59.73  E-value: 1.32e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1093038256 819 SREDITRTLKYVAVTDNDGLVQQHARDVIESLEA 852
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
DUF3752 pfam12572
Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is ...
 3-41 6.27e-03

Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is typically between 140 and 163 amino acids in length.


Pssm-ID: 463632  Cd Length: 150  Bit Score: 38.05  E-value: 6.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1093038256   3 TDTPgTDRQSKLADEVLNAGKRAFDPSADATSREAARKE 41
Cdd:pfam12572  38 TETP-EEKQQRLADEVLGRRRRAAAAAADEGRKRKRRDE 75
 
Name Accession Description Interval E-value
RTP1_C1 pfam10363
Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the ...
 541-652 4.93e-31

Required for nuclear transport of RNA pol II C-terminus 1; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.


Pssm-ID: 463059  Cd Length: 112  Bit Score: 117.57  E-value: 4.93e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093038256 541 YKLALEYITqaDNPPPIRSEGLNLISGLVASN--STVLDVQATLVLLSSLLQDSEDFINLRVVKLFTQLASKHPKATTQE 618
Cdd:pfam10363   1 LQEALKDLN--DPLVPVRAHGLVLLRKLIEKKdpSPVIDIPKILDLFLSNLKDEDSYVYLNAIKGLAALADRYPDEVLPT 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1093038256 619 LLEHYLDAKETSTTDVRLRFGEALVQVIERLGET 652
Cdd:pfam10363  79 LLEEYGDLNEKRSLDERLKVGEALLRVIQRLGEL 112
RTP1_C2 pfam10304
Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the ...
 819-852 1.32e-11

Required for nuclear transport of RNA pol II C-terminus 2; This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10363.


Pssm-ID: 431206  Cd Length: 34  Bit Score: 59.73  E-value: 1.32e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1093038256 819 SREDITRTLKYVAVTDNDGLVQQHARDVIESLEA 852
Cdd:pfam10304   1 NLEDLYRTLKYVEDTDTDDLVREHARDVLEELEA 34
DUF3752 pfam12572
Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is ...
 3-41 6.27e-03

Protein of unknown function (DUF3752); This domain family is found in eukaryotes, and is typically between 140 and 163 amino acids in length.


Pssm-ID: 463632  Cd Length: 150  Bit Score: 38.05  E-value: 6.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1093038256   3 TDTPgTDRQSKLADEVLNAGKRAFDPSADATSREAARKE 41
Cdd:pfam12572  38 TETP-EEKQQRLADEVLGRRRRAAAAAADEGRKRKRRDE 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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