|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
2-388 |
4.70e-178 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 503.37 E-value: 4.70e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 2 NYPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQKQM 81
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTGVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 82 GMADMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFweGESVVSRYPNISDLVDFINT 161
Cdd:TIGR01996 81 GLSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLF--GLSGVSVAPIPEGLAEMINV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 162 IANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEGniKYWNIFGLEIEKVGYQGTVIPTIVS 241
Cdd:TIGR01996 159 FTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGTATG--KAWNIFGLHIPVVGYQGTVLPVLVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 242 AWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVIT 321
Cdd:TIGR01996 237 VWILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVIT 316
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 322 GMHQTFIAVETQLLAEVAqTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:TIGR01996 317 GIHHSFHAIETQLLANTK-TGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGI 382
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
5-388 |
1.21e-98 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 301.60 E-value: 1.21e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 5 KIAEQTIAKL----GGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSgTVNEVYAQMQKQ 80
Cdd:PRK11007 4 KINQQDIDRLielvGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALIAT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 81 MGMADMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFwEGESVVSRYPNISDLVDFIN 160
Cdd:PRK11007 83 TGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMS-DGQTLAQMYPFWQTIYDFLW 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 161 TIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEgnikYWNiFGL-EIEKVGYQGTVIPTI 239
Cdd:PRK11007 162 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPE----VWD-FGLfSIEKVGYQAQVIPAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 240 VSAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYD-SLGFIGGAIFGTFYAPI 318
Cdd:PRK11007 237 LAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTgSFAPIGAALFGFLYAPL 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 319 VITGMHQTFIAVETQLLAEVaqtGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:PRK11007 317 VITGVHQTTLAIDLQMIQSM---GGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGV 383
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-387 |
5.55e-84 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 263.34 E-value: 5.55e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 96 AANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGesvvsryPNISDLVDFINTIANAPFVFLPVLLG 175
Cdd:COG1263 2 KKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEG-------SFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 176 FSATRKFGGNPFLGAALGMLLVHPALADGWNYAKtlmegniKYWNIFGLEIeKVGYQGTVIPTIVSAWVLATLEKTFRKF 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAG-------GYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 256 VPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVITGMHQTFIAVETQLL 335
Cdd:COG1263 147 LPDALGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLL 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1093634003 336 aevAQTGGTFIFPIAAMSNIAQGAACLGVAFAMK-DAKVRGLAVPSGISALLG 387
Cdd:COG1263 227 ---GGTGDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLT 276
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
111-389 |
2.63e-37 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 137.09 E-value: 2.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 111 DIFVPIIPAIVAGGLLMGIhsmltAVGFFWEGESVVSRYPNISDLVDFINTIANAPFVFLPVLLGFSATRKF-GGNPFLG 189
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGL-----GNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 190 AALGMLLVHPALADGWNYAKTlMEGNIKYWNIFGLEIEKVGYQGTVIPTIVSAWVLATLEKTFRKFVPSYLDNLVTPMMS 269
Cdd:pfam02378 77 AAGLIGLLSFNLAAAISVALT-AAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 270 LFIAGILAFTVIGPLGREAGSAISAGLT----WLYDSLGFIGGAIFGTFYAPIVITGMHQTFIAVETQLLA--------- 336
Cdd:pfam02378 156 PIITGFVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianq 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 337 EVAQTGGTFIFP---IAAMSNIAQGAACLGVAFAMKDAKVRGLAVP-SGISALLGIN 389
Cdd:pfam02378 236 QAYGAGAAHILTggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSaALTPFLFGIT 292
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-82 |
1.70e-30 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 111.86 E-value: 1.70e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093634003 4 PKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGtVNEVYAQMQKQMG 82
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPG-VADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
2-388 |
4.70e-178 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 503.37 E-value: 4.70e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 2 NYPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQKQM 81
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTGVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 82 GMADMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFweGESVVSRYPNISDLVDFINT 161
Cdd:TIGR01996 81 GLSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLF--GLSGVSVAPIPEGLAEMINV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 162 IANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEGniKYWNIFGLEIEKVGYQGTVIPTIVS 241
Cdd:TIGR01996 159 FTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGTATG--KAWNIFGLHIPVVGYQGTVLPVLVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 242 AWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVIT 321
Cdd:TIGR01996 237 VWILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVIT 316
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 322 GMHQTFIAVETQLLAEVAqTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:TIGR01996 317 GIHHSFHAIETQLLANTK-TGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGI 382
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-388 |
3.00e-148 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 427.99 E-value: 3.00e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 5 KIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQKQMGMA 84
Cdd:TIGR01992 2 KDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGTVDKVYAALIAETGIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 85 DMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGESVVSRYPNISDLVDFINTIAN 164
Cdd:TIGR01992 82 EVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGGQTLVEVYPQWAGIYNFINLIAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 165 APFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEGNIKYWNIFG-LEIEKVGYQGTVIPTIVSAW 243
Cdd:TIGR01992 162 TAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEGNIPVWDLFGfFEIQKVGYQGQVLPALLAGY 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 244 VLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVITGM 323
Cdd:TIGR01992 242 VLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITGL 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1093634003 324 HQTFIAVETQLlaeVAQTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:TIGR01992 322 HHMFLAVDLQL---IGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGV 383
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
5-388 |
1.21e-98 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 301.60 E-value: 1.21e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 5 KIAEQTIAKL----GGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSgTVNEVYAQMQKQ 80
Cdd:PRK11007 4 KINQQDIDRLielvGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALIAT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 81 MGMADMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFwEGESVVSRYPNISDLVDFIN 160
Cdd:PRK11007 83 TGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMS-DGQTLAQMYPFWQTIYDFLW 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 161 TIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEgnikYWNiFGL-EIEKVGYQGTVIPTI 239
Cdd:PRK11007 162 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPE----VWD-FGLfSIEKVGYQAQVIPAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 240 VSAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYD-SLGFIGGAIFGTFYAPI 318
Cdd:PRK11007 237 LAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTgSFAPIGAALFGFLYAPL 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 319 VITGMHQTFIAVETQLLAEVaqtGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:PRK11007 317 VITGVHQTTLAIDLQMIQSM---GGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGV 383
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-388 |
4.56e-86 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 273.07 E-value: 4.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 3 YPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSgTVNEVYAQMqkqMG 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGN-DVNDVYQAL---MD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 83 MADMSTSEVAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGESVVSrypnisdlvdFINTI 162
Cdd:TIGR01995 77 VLGLDDQAEDDDSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQ----------ILNAM 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 163 ANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADgwnyaktlMEGNIKYWNIFGLEIEKVGYQGTVIPTIVSA 242
Cdd:TIGR01995 147 GDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVA--------MVGSGKPVTFFGIPVTLMSYSSSVIPVILAV 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 243 WVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVITG 322
Cdd:TIGR01995 219 WLMSYVEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFG 298
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093634003 323 MHQTFIAVETQLLAevAQTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:TIGR01995 299 LHWAMIPIVINNIA--TQGFDPLILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGI 362
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-387 |
5.55e-84 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 263.34 E-value: 5.55e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 96 AANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGesvvsryPNISDLVDFINTIANAPFVFLPVLLG 175
Cdd:COG1263 2 KKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEG-------SFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 176 FSATRKFGGNPFLGAALGMLLVHPALADGWNYAKtlmegniKYWNIFGLEIeKVGYQGTVIPTIVSAWVLATLEKTFRKF 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAG-------GYISFLGIPT-LIGYQGGVFPGILAGWLAAYLEKFLKKK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 256 VPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVITGMHQTFIAVETQLL 335
Cdd:COG1263 147 LPDALGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLL 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1093634003 336 aevAQTGGTFIFPIAAMSNIAQGAACLGVAFAMK-DAKVRGLAVPSGISALLG 387
Cdd:COG1263 227 ---GGTGDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLT 276
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
163-388 |
5.71e-65 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 208.71 E-value: 5.71e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 163 ANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEgnikywNIFGLEIEKVGYQGTVIPTIVSA 242
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG------NFFGFEIAKVGYTGVVGPIIVGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 243 WVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGS-AISAGLTWLYDSLGFIGGAIFGTFYAPIVIT 321
Cdd:TIGR00852 75 IALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPT 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 322 GMHQTFIAVETQLLAEVAQTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:TIGR00852 155 GLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGI 221
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-388 |
8.19e-55 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 191.08 E-value: 8.19e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 1 MNYPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSgTVNEVYAQMQKQ 80
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGN-HVADVFLAVNSV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 81 MGMADMSTSevAAAGAANQPLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGESVVSRYPNISDlvdfin 160
Cdd:PRK09824 80 AGLGEKAQQ--APENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASD------ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 161 tianAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNyakTLMEGNIKYWNIFGLEIEKVGYQGTVIPTIV 240
Cdd:PRK09824 152 ----ALFFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFE---AGQKADALGLDFLGIPVTLLNYSSSVIPIIF 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 241 SAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVI 320
Cdd:PRK09824 225 SAWLCSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVI 304
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1093634003 321 TGMHQTFIAVetqLLAEVAQTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGI 388
Cdd:PRK09824 305 FGLHWGLVPL---MINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGI 369
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
1-386 |
1.01e-53 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 185.00 E-value: 1.01e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 1 MNYPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSgTVNEVYAQMQKQ 80
Cdd:PRK09796 3 KNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGN-TVSQAFQEVVSL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 81 MGmadmsTSEVAAAGAANQPL-LQRLVKGLADIFV----PIIPAIVAGGLLMGIHSMLTAVGFFWEGESVVSrypnisdl 155
Cdd:PRK09796 82 LP-----GDMQPAQPVGKPKLtLRRIGAGILDALIgtmsPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLT-------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 156 vdFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKtlmEGniKYWNIFGLEIEKVGYQGTV 235
Cdd:PRK09796 149 --ILNVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAA---QG--EHVEFALIPVTAVKYTYTV 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 236 IPTIVSAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFY 315
Cdd:PRK09796 222 IPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALW 301
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093634003 316 APIVITGMHQTFIAVETQLLAEVAQTGgtFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALL 386
Cdd:PRK09796 302 PLLVMTGMHRVFTPTIIQTIAETGKEG--MVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIM 370
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
9-388 |
3.98e-47 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 167.16 E-value: 3.98e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 9 QTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQKQMGMADMST 88
Cdd:PRK09586 11 TILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMNELLGEAAAPV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 89 SEVAAAGAANQPLL--------QRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVgffwegeSVVSRYPN--ISDLVDF 158
Cdd:PRK09586 91 QDLAEIAAQNKRQLkakqtsgvQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQV-------MHVPADAQgtLPDALNY 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 159 INTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHpaladGWN-YAKTLMEGNIKywNIFGLEIEKvgyQGTVIP 237
Cdd:PRK09586 164 MKVFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLL-----GYNpAATTGYYAGFH--DFFGLPIDP---RGNIIG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 238 TIVSAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGILAFTVIGPLGREagsaISAGLTWLYDSLGF--IGGAIFGTFY 315
Cdd:PRK09586 234 VLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGW----LFEGMSWLFMHLNSnpFGCAVLAGLF 309
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1093634003 316 APIVITGMHQTFIAVetqLLAEVAQTGGTFIFPIAAMSNIAQGAACLGVAF-AMKDAKVRGLAVPSGISALLGI 388
Cdd:PRK09586 310 LIAVVFGVHQGFIPV---YFALMDSQGFNSLFPILAMAGAGQVGAALALYWrAQKHSALRTQVKGAIIPGLLGV 380
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
111-389 |
2.63e-37 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 137.09 E-value: 2.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 111 DIFVPIIPAIVAGGLLMGIhsmltAVGFFWEGESVVSRYPNISDLVDFINTIANAPFVFLPVLLGFSATRKF-GGNPFLG 189
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGL-----GNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 190 AALGMLLVHPALADGWNYAKTlMEGNIKYWNIFGLEIEKVGYQGTVIPTIVSAWVLATLEKTFRKFVPSYLDNLVTPMMS 269
Cdd:pfam02378 77 AAGLIGLLSFNLAAAISVALT-AAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 270 LFIAGILAFTVIGPLGREAGSAISAGLT----WLYDSLGFIGGAIFGTFYAPIVITGMHQTFIAVETQLLA--------- 336
Cdd:pfam02378 156 PIITGFVTLLVIGPVLGLIWPAIQGGLNalglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianq 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 337 EVAQTGGTFIFP---IAAMSNIAQGAACLGVAFAMKDAKVRGLAVP-SGISALLGIN 389
Cdd:pfam02378 236 QAYGAGAAHILTggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSaALTPFLFGIT 292
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-82 |
1.70e-30 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 111.86 E-value: 1.70e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1093634003 4 PKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGtVNEVYAQMQKQMG 82
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPG-VADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
5-81 |
2.75e-29 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 108.28 E-value: 2.75e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 5 KIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIeGVKGQFSTPGQYQIIFGSGtVNEVYAQMQKQM 81
Cdd:COG1264 2 ELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPG-VDKVADEIEKLL 76
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
3-79 |
2.99e-23 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 99.72 E-value: 2.99e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1093634003 3 YPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQK 79
Cdd:PRK14905 274 FSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGIVEKIHEEMKA 350
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-111 |
6.06e-21 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 86.26 E-value: 6.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 28 TRLRLTIADESKIDKEAIENIEGVKGQFSTPGQYQIIFGSGTVNEVYAQMQK-QMGMADMSTSEVAA---AGAANQPLLQ 103
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRlRVGVADVSKVDDAVlkkLGAHGVNPLQ 80
|
....*...
gi 1093634003 104 RLVKGLAD 111
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
11-39 |
1.17e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 58.53 E-value: 1.17e-11
10 20
....*....|....*....|....*....
gi 1093634003 11 IAKLGGKENITTLAHCATRLRLTIADESK 39
Cdd:pfam00367 4 LEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
6-71 |
3.96e-07 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 52.02 E-value: 3.96e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1093634003 6 IAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIeGVKGQFSTPGQYQIIFGSGTVN 71
Cdd:PRK11089 401 MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFGTKSDN 465
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
11-66 |
5.78e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 46.97 E-value: 5.78e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1093634003 11 IAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIeGVKGQFSTPGQYQIIFG 66
Cdd:TIGR00826 34 IQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
11-46 |
8.09e-05 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 44.72 E-value: 8.09e-05
10 20 30
....*....|....*....|....*....|....*.
gi 1093634003 11 IAKLGGKENITTLAHCATRLRLTIADESKIDKEAIE 46
Cdd:PRK10110 456 LEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALK 491
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
7-66 |
1.48e-03 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 38.92 E-value: 1.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1093634003 7 AEQTIAKLGGKENITTLAHCATRLRLTIADESK-IDKEAIENIeGVKGQFSTPGQYQIIFG 66
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKL-GAHGVFRSGDAIQVIIG 132
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
5-100 |
1.63e-03 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 40.62 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1093634003 5 KIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEAIENIeGVKGQFSTPGQ-YQIIFGSgTVNEVYAQMQKQMGM 83
Cdd:PRK10255 391 QLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRL-GASGVVKLNKQtIQVIVGA-KAESIGDAMKKVVAR 468
|
90
....*....|....*..
gi 1093634003 84 ADMSTSEVAAAGAANQP 100
Cdd:PRK10255 469 GPVAAASAEATPATAAP 485
|
|
| |
