|
Name |
Accession |
Description |
Interval |
E-value |
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
215-415 |
1.08e-22 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 96.99 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 215 KFDKESERKSLISAYSQLGAIDADVRKKINFHVDAIDKTFLELKDAEKNNREVlnidyrsFEALRKTQRIIKmslksEEA 294
Cdd:COG3950 70 EFGDSAKLILYYGTSRLLLDGPLKKLERLKEEYFSRLDGYDSLLDEDSNLREF-------LEWLREYLEDLE-----NKL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 295 IKEIFSPINLFTETLHQFISDKKFHFVSGE----LILENNHGTINHKNLSSGEKQLLILFIETLLQQSK----------- 359
Cdd:COG3950 138 SDELDEKLEAVREALNKLLPDFKDIRIDRDpgrlVILDKNGEELPLNQLSDGERSLLALVGDLARRLAElnpalenpleg 217
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1100261110 360 PFIFLTDEPELSLHIAWQRNIIPAIKQLNPNAQVIAATHSPEV-ASKYRNAIFDMEK 415
Cdd:COG3950 218 EGIVLIDEIDLHLHPKWQRRILPDLRKIFPNIQFIVTTHSPLIlSSLEDEEVIVLER 274
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
162-402 |
1.46e-14 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 73.96 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 162 PIDFRLEQLLQNLTKYQLSLSQRAREVSTNL--QKEVLASILYSKEDTVSEAYNWKFDKESERKSLISAYSQLGAIDADV 239
Cdd:pfam13304 57 PIEFEISEFLEDGVRYRYGLDLEREDVEEKLssKPTLLEKRLLLREDSEEREPKFPPEAEELRLGLDVEERIELSLSELS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 240 RKKINFHVDAIDKTFLELKDAEKNNREVLNIDYRSFEALRKTQRIIKMSLKSEEAIKEIFSPINLFTETLHQFISDKKFH 319
Cdd:pfam13304 137 DLISGLLLLSIISPLSFLLLLDEGLLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSLLVDDRL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 320 FVSGELILENNHGT-INHKNLSSGEKQLLILFIETLLQQSKPFIFLTDEPELSLHIAWQRNIIPAIKQL-NPNAQVIAAT 397
Cdd:pfam13304 217 RERGLILLENGGGGeLPAFELSDGTKRLLALLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELsRNGAQLILTT 296
|
....*
gi 1100261110 398 HSPEV 402
Cdd:pfam13304 297 HSPLL 301
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
3-403 |
1.44e-09 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 59.53 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 3 RLDSVQIEGFWGRLNASCIFNENVNIIIGRNGTGKTTFMNILHSVLAV-----ELDSINDNNFDKVTIK------VKEGS 71
Cdd:pfam13175 2 KIKSIIIKNFRCLKDTEIDLDEDLTVLIGKNNSGKSSILEALDIFLNNkekffEDDFLVLYLKDVIKIDkedlniFENIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 72 KVKTIKVEKKYDPTRpFSTFEYIISQKRYVIRSIDDRRMPYSMRRKFQEDIDNLKSELHKLVALSSLSVYRLRSGEDLEI 151
Cdd:pfam13175 82 FSIDIEIDVEFLLIL-FGYLEIKKKYLCLASKGKAKEYEKTLHPKGANKADLLLELKISDLKKYLKQFKIYIYNNYYLDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 152 RDNYGSKFINPIDFRLEQLLQNLTKYQLSLSQrarEVSTNLQKEVLASILYSKEdtvseaynwKFDKESERKSLISAysQ 231
Cdd:pfam13175 161 KKNVFDKKSKYELPSLKEEFLNSEKEEIKVDK---EDLKKLINELEKSINYHEN---------VLENLQIKKLLISA--D 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 232 LGAIDADVRKKINFHVDAIDKTFLELKDAEKNNREVLNidyRSFEALRKTQRIIKMSLKseeaiKEIFSPINLFtetlhQ 311
Cdd:pfam13175 227 RNASDEDSEKINSLLGALKQRIFEEALQEELELTEKLK---ETQNKLKEIDKTLAEELK-----NILFKKIDKL-----K 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 312 FISDKKFHFVSGELILENNHGTINhkNLSSGEKQL--LILFIETLLQ-----QSKPFIFLTDEPELSLHIAWQRNIIPAI 384
Cdd:pfam13175 294 DFGYPPFLNPEIEIKKDDEDLPLN--KNGSGVQRLilLIFFIAEAERkedeiEEKNVILAIEEPEAHLHPQAQRVLIKLL 371
|
410 420
....*....|....*....|.
gi 1100261110 385 KQL--NPNAQVIAATHSPEVA 403
Cdd:pfam13175 372 KELanDNKTQVIITTHSPHII 392
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
339-415 |
2.31e-05 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 44.16 E-value: 2.31e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1100261110 339 LSSGEKQLLILfIETLLQQSKpfIFLTDEPELSLHIAWQRNIIPAIKQLN-PNAQVIAATHSPEVASKYRNAIFDMEK 415
Cdd:cd00267 81 LSGGQRQRVAL-ARALLLNPD--LLLLDEPTSGLDPASRERLLELLRELAeEGRTVIIVTHDPELAELAADRVIVLKD 155
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
3-186 |
3.90e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 44.23 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 3 RLDSVQIEGFWGRLNASCI-FNENVNIIIGRNGTGKTTFMNILHSVLAVELDSINDNNFDKVTIKVKEGSkvktikVEkk 81
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIdFDDGLNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEEAS------VE-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 82 ydptrpfstFEYIISQKRYVIRsiddrrmpysmRR--KFQEDIDNLKSELHKLVA-LSSLSVYRLRSGEDLEIRDNYGSK 158
Cdd:COG0419 73 ---------LEFEHGGKRYRIE-----------RRqgEFAEFLEAKPSERKEALKrLLGLEIYEELKERLKELEEALESA 132
|
170 180 190
....*....|....*....|....*....|....
gi 1100261110 159 F--INPIDFRLEQLLQNLTKY----QLSLSQRAR 186
Cdd:COG0419 133 LeeLAELQKLKQEILAQLSGLdpieTLSGGERLR 166
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
4-95 |
6.62e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 37.59 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 4 LDSVQIEGFWGRLNASCI-FNENVNIIIGRNGTGKTTFMNILHSVLAVELDSINDNNFDKVTIkVKEGSKVKTIKVE--- 79
Cdd:cd03240 1 IDKLSIRNIRSFHERSEIeFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL-IREGEVRAQVKLAfen 79
|
90
....*....|....*....
gi 1100261110 80 ---KKYDPTRPFSTFEYII 95
Cdd:cd03240 80 angKKYTITRSLAILENVI 98
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
215-415 |
1.08e-22 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 96.99 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 215 KFDKESERKSLISAYSQLGAIDADVRKKINFHVDAIDKTFLELKDAEKNNREVlnidyrsFEALRKTQRIIKmslksEEA 294
Cdd:COG3950 70 EFGDSAKLILYYGTSRLLLDGPLKKLERLKEEYFSRLDGYDSLLDEDSNLREF-------LEWLREYLEDLE-----NKL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 295 IKEIFSPINLFTETLHQFISDKKFHFVSGE----LILENNHGTINHKNLSSGEKQLLILFIETLLQQSK----------- 359
Cdd:COG3950 138 SDELDEKLEAVREALNKLLPDFKDIRIDRDpgrlVILDKNGEELPLNQLSDGERSLLALVGDLARRLAElnpalenpleg 217
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1100261110 360 PFIFLTDEPELSLHIAWQRNIIPAIKQLNPNAQVIAATHSPEV-ASKYRNAIFDMEK 415
Cdd:COG3950 218 EGIVLIDEIDLHLHPKWQRRILPDLRKIFPNIQFIVTTHSPLIlSSLEDEEVIVLER 274
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
162-402 |
1.46e-14 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 73.96 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 162 PIDFRLEQLLQNLTKYQLSLSQRAREVSTNL--QKEVLASILYSKEDTVSEAYNWKFDKESERKSLISAYSQLGAIDADV 239
Cdd:pfam13304 57 PIEFEISEFLEDGVRYRYGLDLEREDVEEKLssKPTLLEKRLLLREDSEEREPKFPPEAEELRLGLDVEERIELSLSELS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 240 RKKINFHVDAIDKTFLELKDAEKNNREVLNIDYRSFEALRKTQRIIKMSLKSEEAIKEIFSPINLFTETLHQFISDKKFH 319
Cdd:pfam13304 137 DLISGLLLLSIISPLSFLLLLDEGLLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSLLVDDRL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 320 FVSGELILENNHGT-INHKNLSSGEKQLLILFIETLLQQSKPFIFLTDEPELSLHIAWQRNIIPAIKQL-NPNAQVIAAT 397
Cdd:pfam13304 217 RERGLILLENGGGGeLPAFELSDGTKRLLALLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELsRNGAQLILTT 296
|
....*
gi 1100261110 398 HSPEV 402
Cdd:pfam13304 297 HSPLL 301
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
276-405 |
2.50e-12 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 67.72 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 276 EALRKTQRIIKMSLKS-EEAIKEIFSPINLFTETLHQFISDKKFHFVSGELILENNHGTINHKNLSSGEKQLLILFIETL 354
Cdd:COG3593 99 EALEELNEELKEALKAlNELLSEYLKELLDGLDLELELSLDELEDLLKSLSLRIEDGKELPLDRLGSGFQRLILLALLSA 178
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1100261110 355 L----QQSKPFIFLTDEPELSLHIAWQRNIIPAIKQL-NPNAQVIAATHSPEVASK 405
Cdd:COG3593 179 LaelkRAPANPILLIEEPEAHLHPQAQRRLLKLLKELsEKPNQVIITTHSPHLLSE 234
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
3-403 |
1.44e-09 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 59.53 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 3 RLDSVQIEGFWGRLNASCIFNENVNIIIGRNGTGKTTFMNILHSVLAV-----ELDSINDNNFDKVTIK------VKEGS 71
Cdd:pfam13175 2 KIKSIIIKNFRCLKDTEIDLDEDLTVLIGKNNSGKSSILEALDIFLNNkekffEDDFLVLYLKDVIKIDkedlniFENIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 72 KVKTIKVEKKYDPTRpFSTFEYIISQKRYVIRSIDDRRMPYSMRRKFQEDIDNLKSELHKLVALSSLSVYRLRSGEDLEI 151
Cdd:pfam13175 82 FSIDIEIDVEFLLIL-FGYLEIKKKYLCLASKGKAKEYEKTLHPKGANKADLLLELKISDLKKYLKQFKIYIYNNYYLDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 152 RDNYGSKFINPIDFRLEQLLQNLTKYQLSLSQrarEVSTNLQKEVLASILYSKEdtvseaynwKFDKESERKSLISAysQ 231
Cdd:pfam13175 161 KKNVFDKKSKYELPSLKEEFLNSEKEEIKVDK---EDLKKLINELEKSINYHEN---------VLENLQIKKLLISA--D 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 232 LGAIDADVRKKINFHVDAIDKTFLELKDAEKNNREVLNidyRSFEALRKTQRIIKMSLKseeaiKEIFSPINLFtetlhQ 311
Cdd:pfam13175 227 RNASDEDSEKINSLLGALKQRIFEEALQEELELTEKLK---ETQNKLKEIDKTLAEELK-----NILFKKIDKL-----K 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 312 FISDKKFHFVSGELILENNHGTINhkNLSSGEKQL--LILFIETLLQ-----QSKPFIFLTDEPELSLHIAWQRNIIPAI 384
Cdd:pfam13175 294 DFGYPPFLNPEIEIKKDDEDLPLN--KNGSGVQRLilLIFFIAEAERkedeiEEKNVILAIEEPEAHLHPQAQRVLIKLL 371
|
410 420
....*....|....*....|.
gi 1100261110 385 KQL--NPNAQVIAATHSPEVA 403
Cdd:pfam13175 372 KELanDNKTQVIITTHSPHII 392
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
276-410 |
1.26e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 49.58 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 276 EALRKTQRIIKMSLKSEEAIKEIFSPINLFTETLHQFISDKKfhfvSGELILENNHGTINHK--NLSSGEKQLLILFIET 353
Cdd:COG4938 81 DFLAELENLEILDDKSKELLEQVEEWLEKIFPGKVEVDASSD----LVRLVFRPSGNGKRIPlsNVGSGVSELLPILLAL 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1100261110 354 LLQQSKPFIFLTDEPELSLHIAWQRNIIPAI-KQLNPNAQVIAATHSPEVASKYRNAI 410
Cdd:COG4938 157 LSAAKPGSLLIIEEPEAHLHPKAQSALAELLaELANSGVQVIIETHSDYILNGLRNLI 214
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
339-404 |
5.01e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 48.39 E-value: 5.01e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1100261110 339 LSSGekQLLILFIETLLQQSKP--FIFLtDEPELSLHIAWQRNIIPAIKQLNPNAQVIAATHSPEVAS 404
Cdd:COG4637 259 LSDG--TLRFLALLAALLSPRPppLLCI-EEPENGLHPDLLPALAELLREASERTQVIVTTHSPALLD 323
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
257-415 |
9.02e-06 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 47.35 E-value: 9.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 257 LKDAEKNNREVLNIDYRSFEA-------LRKTQRIIKMSLKSEEAIKEIFSPINL------FTETLHQFISDKKFHFVsg 323
Cdd:COG1106 113 LSTAAQLNVPLLSPLYDWFDNnisldtsSDGLTLLLKEDESLKEELLELLKIADPgiedieVEEEEIEDLVERKLIFK-- 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 324 eliLENNHGTINHKNLSSGEKQLLILFIETLLQQSKPFIFLTDEPELSLHIAWQRNIIPAIKQL-NP-NAQVIAATHSPE 401
Cdd:COG1106 191 ---HKGGNVPLPLSEESDGTKRLLALAGALLDALAKGGVLLIDEIEASLHPSLLRKLLKLFLDLaNKnNAQLIFTTHSTE 267
|
170
....*....|....*....
gi 1100261110 402 VASKY-----RNAIFDMEK 415
Cdd:COG1106 268 LLDAFlellrRDQIWFVEK 286
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
339-415 |
2.31e-05 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 44.16 E-value: 2.31e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1100261110 339 LSSGEKQLLILfIETLLQQSKpfIFLTDEPELSLHIAWQRNIIPAIKQLN-PNAQVIAATHSPEVASKYRNAIFDMEK 415
Cdd:cd00267 81 LSGGQRQRVAL-ARALLLNPD--LLLLDEPTSGLDPASRERLLELLRELAeEGRTVIIVTHDPELAELAADRVIVLKD 155
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
3-186 |
3.90e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 44.23 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 3 RLDSVQIEGFWGRLNASCI-FNENVNIIIGRNGTGKTTFMNILHSVLAVELDSINDNNFDKVTIKVKEGSkvktikVEkk 81
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIdFDDGLNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEEAS------VE-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 82 ydptrpfstFEYIISQKRYVIRsiddrrmpysmRR--KFQEDIDNLKSELHKLVA-LSSLSVYRLRSGEDLEIRDNYGSK 158
Cdd:COG0419 73 ---------LEFEHGGKRYRIE-----------RRqgEFAEFLEAKPSERKEALKrLLGLEIYEELKERLKELEEALESA 132
|
170 180 190
....*....|....*....|....*....|....
gi 1100261110 159 F--INPIDFRLEQLLQNLTKY----QLSLSQRAR 186
Cdd:COG0419 133 LeeLAELQKLKQEILAQLSGLdpieTLSGGERLR 166
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
3-152 |
4.42e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 45.38 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 3 RLDSVQIEGFWGRLNASCIFNENVNIIIGRNGTGKTTFMNILHSVlaveLDSINDNNFDKVTIKVKEGSKVKTIKVEkky 82
Cdd:COG3593 2 KLEKIKIKNFRSIKDLSIELSDDLTVLVGENNSGKSSILEALRLL----LGPSSSRKFDEEDFYLGDDPDLPEIEIE--- 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 83 dptrpfSTFEYIISQkryVIRSIDDRRMPYSMRRKFQEDIDNLKSELHKLVALSSLSVYRLRSGEDLEIR 152
Cdd:COG3593 75 ------LTFGSLLSR---LLRLLLKEEDKEELEEALEELNEELKEALKALNELLSEYLKELLDGLDLELE 135
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
3-53 |
5.07e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 5.07e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1100261110 3 RLDSVQIEGFWGRLNASCIFNENVNIIIGRNGTGKTTFMNILHSVLAVELD 53
Cdd:COG4717 2 KIKELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLAFIRAMLLERLE 52
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
22-98 |
6.43e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 40.56 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 22 FNENVNIIIGRNGTGKTTFMNILHSVL---AVELDSINDNNFDKVTIKVKEGSKVKT---IKVEKKYDPTRPFSTFEYII 95
Cdd:pfam13476 16 FSKGLTLITGPNGSGKTTILDAIKLALygkTSRLKRKSGGGFVKGDIRIGLEGKGKAyveITFENNDGRYTYAIERSREL 95
|
...
gi 1100261110 96 SQK 98
Cdd:pfam13476 96 SKK 98
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
339-419 |
4.17e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 37.72 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 339 LSSGEKQL----LILFIETLlqQSKPFIFLtDEPELSLHIAWQRNIIPAIK-QLNPNAQVIAATHSPEVASKYRnAIFDM 413
Cdd:cd03227 78 LSGGEKELsalaLILALASL--KPRPLYIL-DEIDRGLDPRDGQALAEAILeHLVKGAQVIVITHLPELAELAD-KLIHI 153
|
....*.
gi 1100261110 414 EKLVHG 419
Cdd:cd03227 154 KKVITG 159
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
338-400 |
4.20e-03 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 38.34 E-value: 4.20e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1100261110 338 NLSSGEKQLLILfIETLLQQskPFIFLTDEPELSLHIAWQRNIIPAIKQLNPNAQVIAATHSP 400
Cdd:cd03245 140 GLSGGQRQAVAL-ARALLND--PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRP 199
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
17-44 |
5.51e-03 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 38.89 E-value: 5.51e-03
10 20
....*....|....*....|....*....
gi 1100261110 17 NASCIFNENVNI-IIGRNGTGKTTFMNIL 44
Cdd:COG0488 16 DVSLSINPGDRIgLVGRNGAGKSTLLKIL 44
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
4-95 |
6.62e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 37.59 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1100261110 4 LDSVQIEGFWGRLNASCI-FNENVNIIIGRNGTGKTTFMNILHSVLAVELDSINDNNFDKVTIkVKEGSKVKTIKVE--- 79
Cdd:cd03240 1 IDKLSIRNIRSFHERSEIeFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL-IREGEVRAQVKLAfen 79
|
90
....*....|....*....
gi 1100261110 80 ---KKYDPTRPFSTFEYII 95
Cdd:cd03240 80 angKKYTITRSLAILENVI 98
|
|
| |
