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Conserved domains on  [gi|1113398461|gb|OJW61357|]
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hypothetical protein BGO55_32415 [Sphingobacteriales bacterium 50-39]

Protein Classification

porin family protein( domain architecture ID 10611987)

porin family protein is a member of a large superfamily consisting of classical (gram-negative ) porins which are non-specific channels for small hydrophillic molecules, maltoporin-like channels which have specificities for various sugars, and ligand-gated protein channels which cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force

CATH:  2.40.160.10
Gene Ontology:  GO:0009279|GO:0015288
PubMed:  31792365|31214985
SCOP:  4003061

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 20-174 8.00e-21

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


:

Pssm-ID: 433316  Cd Length: 175  Bit Score: 84.76  E-value: 8.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  20 FGIKGGLNLTTLYSSDVSTSHMKP--GFNAGVFAKLPVTRGFSIQPELLYSLKGAK-SSYDNFVQGSG-EYRFNLGYLEL 95
Cdd:pfam13568  11 IGVKGGFNASKLSPEPRNISDYNPrgGFSVGVIVRYRLNNRWGFQPGLGYSNRGWEfEFEVETSSGDTyKTKRTSTYLEL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  96 PVLAVVNIAP----NFNIHAGGYAAYLTNANIKNVDNHGNiQGATDLNADNFNRWDFGLAGGAGFDI-ENFTIGARYNYG 170
Cdd:pfam13568  91 PLLAKYRFGKsnnvRLFFQAGPKLGYLLGGKFSGTDSDVT-DSDASYDTDKLRKFDYGLVIGAGLEFfNRLTLELRYYYG 169


                  ....
gi 1113398461 171 LSKI 174
Cdd:pfam13568 170 LNDI 173
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 20-174 8.00e-21

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 84.76  E-value: 8.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  20 FGIKGGLNLTTLYSSDVSTSHMKP--GFNAGVFAKLPVTRGFSIQPELLYSLKGAK-SSYDNFVQGSG-EYRFNLGYLEL 95
Cdd:pfam13568  11 IGVKGGFNASKLSPEPRNISDYNPrgGFSVGVIVRYRLNNRWGFQPGLGYSNRGWEfEFEVETSSGDTyKTKRTSTYLEL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  96 PVLAVVNIAP----NFNIHAGGYAAYLTNANIKNVDNHGNiQGATDLNADNFNRWDFGLAGGAGFDI-ENFTIGARYNYG 170
Cdd:pfam13568  91 PLLAKYRFGKsnnvRLFFQAGPKLGYLLGGKFSGTDSDVT-DSDASYDTDKLRKFDYGLVIGAGLEFfNRLTLELRYYYG 169


                  ....
gi 1113398461 171 LSKI 174
Cdd:pfam13568 170 LNDI 173
 
Name Accession Description Interval E-value
OMP_b-brl_2 pfam13568
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 20-174 8.00e-21

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 433316  Cd Length: 175  Bit Score: 84.76  E-value: 8.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  20 FGIKGGLNLTTLYSSDVSTSHMKP--GFNAGVFAKLPVTRGFSIQPELLYSLKGAK-SSYDNFVQGSG-EYRFNLGYLEL 95
Cdd:pfam13568  11 IGVKGGFNASKLSPEPRNISDYNPrgGFSVGVIVRYRLNNRWGFQPGLGYSNRGWEfEFEVETSSGDTyKTKRTSTYLEL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  96 PVLAVVNIAP----NFNIHAGGYAAYLTNANIKNVDNHGNiQGATDLNADNFNRWDFGLAGGAGFDI-ENFTIGARYNYG 170
Cdd:pfam13568  91 PLLAKYRFGKsnnvRLFFQAGPKLGYLLGGKFSGTDSDVT-DSDASYDTDKLRKFDYGLVIGAGLEFfNRLTLELRYYYG 169


                  ....
gi 1113398461 171 LSKI 174
Cdd:pfam13568 170 LNDI 173
OMP_b-brl pfam13505
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 1-178 3.62e-05

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 463903 [Multi-domain]  Cd Length: 175  Bit Score: 42.39  E-value: 3.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461   1 MSASAQEQQTitdpglKAKFGIKGGLNLTTLYSSDVSTshmKPGFNAGVFAKLPVTRGFSIQPELLYSlkgakSSYDNFV 80
Cdd:pfam13505   9 FSAAAAAAEE------FGGFYVGGGLGNANFSFDGDGT---DSGGGFGVGAGYDFNDYLGVEGELGYG-----SDDDYSG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113398461  81 QGSGEYRFNLGYLELPVLAVVNIAPNFNIHAG-GYAAYLTNANIKNVDnhgniqgatdlnaDNFNRWDFGLAGGAGFDI- 158
Cdd:pfam13505  75 GGNTDANIRSLSIGVNLGYRFPLSDSLLPYGGaGYGYSKLEGDYNGVS-------------DSGTDFGFGYGAGVEYALt 141

                         170       180
                  ....*....|....*....|
gi 1113398461 159 ENFTIGARYNYGLSKIGKSD 178
Cdd:pfam13505 142 DHLAVRAEYRYTDIKSGGDD 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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