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Conserved domains on  [gi|1113611788|gb|OJY70842|]
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P-type conjugative transfer ATPase TrbB [Sphingobium sp. 66-54]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 1-297 1.81e-120

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member TIGR02782:

Pssm-ID: 476819  Cd Length: 299  Bit Score: 347.88  E-value: 1.81e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   1 MLITAFGPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGtRLDPTQVERIIRLVASHARTEVHAASPIVSAELPPh 80
Cdd:TIGR02782   1 MLRRALGPEIAAALDDPGVVEIMLNPDGRLWVERLGSGMSPLG-EMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPL- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  81 gegAGERFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANA--LL 158
Cdd:TIGR02782  79 ---DGSRFEGLIPPVVAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANAllAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 159 AELAHLDERVILIEDTRELQCAASDVVALRTRAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIAT 238
Cdd:TIGR02782 156 IAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIAT 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1113611788 239 VHANSARAALYRLEQLVQESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAGLDP 297
Cdd:TIGR02782 236 IHANNAKAALDRLEQLIQEVSVTPMQTLIAEAVDLVIFIARTPAGRRVQEIAKVKGFDD 294
 
Name Accession Description Interval E-value
TrbB_P TIGR02782
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ...
 1-297 1.81e-120

P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]


Pssm-ID: 274297  Cd Length: 299  Bit Score: 347.88  E-value: 1.81e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   1 MLITAFGPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGtRLDPTQVERIIRLVASHARTEVHAASPIVSAELPPh 80
Cdd:TIGR02782   1 MLRRALGPEIAAALDDPGVVEIMLNPDGRLWVERLGSGMSPLG-EMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPL- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  81 gegAGERFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANA--LL 158
Cdd:TIGR02782  79 ---DGSRFEGLIPPVVAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANAllAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 159 AELAHLDERVILIEDTRELQCAASDVVALRTRAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIAT 238
Cdd:TIGR02782 156 IAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIAT 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1113611788 239 VHANSARAALYRLEQLVQESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAGLDP 297
Cdd:TIGR02782 236 IHANNAKAALDRLEQLIQEVSVTPMQTLIAEAVDLVIFIARTPAGRRVQEIAKVKGFDD 294
PRK13894 PRK13894
conjugal transfer ATPase TrbB; Provisional
 7-301 4.25e-89

conjugal transfer ATPase TrbB; Provisional


Pssm-ID: 184377  Cd Length: 319  Bit Score: 268.92  E-value: 4.25e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   7 GPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGTrLDPTQVERIIRLVASHARTEVHAASPIVSAELPPHGEgage 86
Cdd:PRK13894   23 GPELLAALNDPKTVEIMLNADGKLWQERLGEPMRCIGT-LRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGS---- 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  87 RFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHLD- 165
Cdd:PRK13894   98 RFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDp 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 166 -ERVILIEDTRELQCAASDVVALRTRAgSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIATVHANSA 244
Cdd:PRK13894  178 tERVFIIEDTGEIQCAAENYVQYHTSI-DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNA 256

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1113611788 245 RAALYRLEQLV--QESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAGLDpDGGY 301
Cdd:PRK13894  257 KAGLDRLKSLIsmHPDAPKPIEPLIGEAVHVVVHIARTPGGRRIQEILEVSGYA-NGQY 314
CpaF COG4962
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ...
 3-306 7.56e-77

Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443988 [Multi-domain]  Cd Length: 386  Bit Score: 239.68  E-value: 7.56e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   3 ITAFGPIvAAALRDDLVIEIMANPDGALRLDRLGeGRVETGTRL-DPTQVERIIRLVASHARTEVHAASPIVSAELPPhg 81
Cdd:COG4962    53 LFGLGPL-EPLLDDPDVTDIMVNGPDEVFVERGG-RLERTDVRFdSEEELRRLIERIAARVGRRLDESSPIVDARLPD-- 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  82 egaGERFEGILPPVATA-PCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAE 160
Cdd:COG4962   129 ---GSRVNAVIPPVARDgPSLSIRKFRKRPLTLEDLVALGSLTPEMAEFLRAAVRARLNILVSGGTGSGKTTLLNALSGF 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 161 LAHlDERVILIEDTRELQCAASDVVALRTR------AGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPG 234
Cdd:COG4962   206 IPP-DERIVTIEDAAELQLQHPHVVRLETRppnvegAGEVTLRDLVRNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDG 284

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1113611788 235 GIATVHANSARAALYRLEQLVQESVVTVP----QRLIAEAIDMIVFIA-GRGLARRIETIARVAGLDpDGGYAVFDL 306
Cdd:COG4962   285 SMSTLHANSARDALARLETLALMAGENLPreavRRQIASAIDLVVHLErLRDGRRRVTEIAEVTGME-GGRVVLQPI 360
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 134-292 8.56e-58

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 183.90  E-value: 8.56e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 134 VVDRKTILVAGGTSSGKTTLANALLAELAHlDERVILIEDTRELQCAASDVVALRTR-----AGSVSMADLVRSTLRLRP 208
Cdd:cd01130     9 VRARKNILISGGTGSGKTTLLNALLSFIPP-DERIVTIEDTRELQLPHPNVVHLLTRpgggeKGEVTMADLLKAALRMRP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 209 DRIIVGEVRGPEALDMLKAWNTGHPGGIATVHANSARAALYRLEQLVQESVVTVP----QRLIAEAIDMIVFI-AGRGLA 283
Cdd:cd01130    88 DRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDeealRRLIASAIDVIVHVkRLGDGV 167


                  ....*....
gi 1113611788 284 RRIETIARV 292
Cdd:cd01130   168 RRVTEIYEV 176
T2SSE pfam00437
Type II/IV secretion system protein; This family contains components of both the Type II ...
 45-275 2.05e-39

Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.


Pssm-ID: 425681 [Multi-domain]  Cd Length: 269  Bit Score: 139.34  E-value: 2.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  45 RLDPTQVERIIRLVASHARTEVHAASPIVSAELPPHGEGAGERFEGILPPVATAPCFSIR--KPAARIYTLADYvrdGIL 122
Cdd:pfam00437  39 FPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVSTLPTAGGEKLVIRllDPSNVALSLDEL---GMT 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 123 AAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHLDERVILIEDTRELQCAASDVVALRTRAGsVSMADLVRS 202
Cdd:pfam00437 116 GAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVEDPVEIQLEGINQVQLNARAG-VTFADLLRA 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1113611788 203 TLRLRPDRIIVGEVRGPEALDM-LKAWNTGHPgGIATVHANSARAALYRLEQLVqesvvtVPQRLIAEAIDMIV 275
Cdd:pfam00437 195 ILRQDPDRIMVGEIRDLETAEIaLQAANTGHL-VLSTLHTNSAAGALTRLQDMG------VPPFELASSLLLVI 261
 
Name Accession Description Interval E-value
TrbB_P TIGR02782
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ...
 1-297 1.81e-120

P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]


Pssm-ID: 274297  Cd Length: 299  Bit Score: 347.88  E-value: 1.81e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   1 MLITAFGPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGtRLDPTQVERIIRLVASHARTEVHAASPIVSAELPPh 80
Cdd:TIGR02782   1 MLRRALGPEIAAALDDPGVVEIMLNPDGRLWVERLGSGMSPLG-EMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPL- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  81 gegAGERFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANA--LL 158
Cdd:TIGR02782  79 ---DGSRFEGLIPPVVAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANAllAE 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 159 AELAHLDERVILIEDTRELQCAASDVVALRTRAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIAT 238
Cdd:TIGR02782 156 IAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIAT 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1113611788 239 VHANSARAALYRLEQLVQESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAGLDP 297
Cdd:TIGR02782 236 IHANNAKAALDRLEQLIQEVSVTPMQTLIAEAVDLVIFIARTPAGRRVQEIAKVKGFDD 294
PRK13894 PRK13894
conjugal transfer ATPase TrbB; Provisional
 7-301 4.25e-89

conjugal transfer ATPase TrbB; Provisional


Pssm-ID: 184377  Cd Length: 319  Bit Score: 268.92  E-value: 4.25e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   7 GPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGTrLDPTQVERIIRLVASHARTEVHAASPIVSAELPPHGEgage 86
Cdd:PRK13894   23 GPELLAALNDPKTVEIMLNADGKLWQERLGEPMRCIGT-LRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGS---- 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  87 RFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHLD- 165
Cdd:PRK13894   98 RFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDp 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 166 -ERVILIEDTRELQCAASDVVALRTRAgSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIATVHANSA 244
Cdd:PRK13894  178 tERVFIIEDTGEIQCAAENYVQYHTSI-DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNA 256

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1113611788 245 RAALYRLEQLV--QESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAGLDpDGGY 301
Cdd:PRK13894  257 KAGLDRLKSLIsmHPDAPKPIEPLIGEAVHVVVHIARTPGGRRIQEILEVSGYA-NGQY 314
PRK13833 PRK13833
conjugal transfer protein TrbB; Provisional
 5-294 4.49e-86

conjugal transfer protein TrbB; Provisional


Pssm-ID: 172360 [Multi-domain]  Cd Length: 323  Bit Score: 261.27  E-value: 4.49e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   5 AFGPIVAAALRDDLVIEIMANPDGALRLDRLGEGRVETGTrLDPTQVERIIRLVASHARTEVHAASPIVSAELPPhgegA 84
Cdd:PRK13833   17 ALGDQLCVALDDATVVEIMLNPDGKLFIERLGHGVAPAGE-MSAAAAEVVIGSVAHALQSEADDERPIISGELPI----G 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  85 GERFEGILPPVATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANA--LLAELA 162
Cdd:PRK13833   92 GHRFEGLLPPVVSGPAFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAviAEIVAS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 163 HLDERVILIEDTRELQCAASDVVALRTrAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIATVHAN 242
Cdd:PRK13833  172 APEDRLVILEDTAEIQCAAENAVALHT-SDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSN 250

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1113611788 243 SARAALYRLEQLVQESVVTVPQRLIAEAIDMIVFIAGRGLARRIETIARVAG 294
Cdd:PRK13833  251 TAMSALRRLEQLTAEASQQPMQEVIGEAVDLIVSIERTGKGRRVREVIHVEG 302
CpaF COG4962
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ...
 3-306 7.56e-77

Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443988 [Multi-domain]  Cd Length: 386  Bit Score: 239.68  E-value: 7.56e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   3 ITAFGPIvAAALRDDLVIEIMANPDGALRLDRLGeGRVETGTRL-DPTQVERIIRLVASHARTEVHAASPIVSAELPPhg 81
Cdd:COG4962    53 LFGLGPL-EPLLDDPDVTDIMVNGPDEVFVERGG-RLERTDVRFdSEEELRRLIERIAARVGRRLDESSPIVDARLPD-- 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  82 egaGERFEGILPPVATA-PCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAE 160
Cdd:COG4962   129 ---GSRVNAVIPPVARDgPSLSIRKFRKRPLTLEDLVALGSLTPEMAEFLRAAVRARLNILVSGGTGSGKTTLLNALSGF 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 161 LAHlDERVILIEDTRELQCAASDVVALRTR------AGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPG 234
Cdd:COG4962   206 IPP-DERIVTIEDAAELQLQHPHVVRLETRppnvegAGEVTLRDLVRNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDG 284

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1113611788 235 GIATVHANSARAALYRLEQLVQESVVTVP----QRLIAEAIDMIVFIA-GRGLARRIETIARVAGLDpDGGYAVFDL 306
Cdd:COG4962   285 SMSTLHANSARDALARLETLALMAGENLPreavRRQIASAIDLVVHLErLRDGRRRVTEIAEVTGME-GGRVVLQPI 360
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 134-292 8.56e-58

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 183.90  E-value: 8.56e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 134 VVDRKTILVAGGTSSGKTTLANALLAELAHlDERVILIEDTRELQCAASDVVALRTR-----AGSVSMADLVRSTLRLRP 208
Cdd:cd01130     9 VRARKNILISGGTGSGKTTLLNALLSFIPP-DERIVTIEDTRELQLPHPNVVHLLTRpgggeKGEVTMADLLKAALRMRP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 209 DRIIVGEVRGPEALDMLKAWNTGHPGGIATVHANSARAALYRLEQLVQESVVTVP----QRLIAEAIDMIVFI-AGRGLA 283
Cdd:cd01130    88 DRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDeealRRLIASAIDVIVHVkRLGDGV 167


                  ....*....
gi 1113611788 284 RRIETIARV 292
Cdd:cd01130   168 RRVTEIYEV 176
VirB11 TIGR02788
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ...
 14-289 3.89e-55

P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.


Pssm-ID: 274301  Cd Length: 308  Bit Score: 181.40  E-value: 3.89e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  14 LRDDLVIEIMANPDGALRLDRLGEGRVETGTRLDPTQVERIIRLVASHARTEVHAASPIVSAELPphgegAGERFEGILP 93
Cdd:TIGR02788   2 LDDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLP-----GGERVQIVIP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  94 PvATAP---CFSIRKPAARIYTLADYVRDGILAAEAAQLLARA----------------------VVDRKTILVAGGTSS 148
Cdd:TIGR02788  77 P-ACENdtvSITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSdndeqllelldagdikeflrlaIASRKNIIISGGTGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 149 GKTTLANALLAELAHlDERVILIEDTRELQCAASDVVAL-----RTRAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALD 223
Cdd:TIGR02788 156 GKTTFLKSLVDEIPK-DERIITIEDTREIFLPHPNYVHLfyskgGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFD 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1113611788 224 MLKAWNTGHPGGIATVHANSARAALYRLEQLVQESVVTVP------QRLIAEAIDMIVFIAGRGLARRIETI 289
Cdd:TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGldfayiVKLVREVIDIVVQINRRGGGRKITEV 306
heli_sec_ATPase TIGR03819
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ...
 3-254 2.54e-43

helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.


Pssm-ID: 200328  Cd Length: 340  Bit Score: 151.72  E-value: 2.54e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788   3 ITAFGPIvAAALRDDLVIEIMANPDGALRLDRlGEGRVETGTRL-DPTQVERI-IRLVASHARtEVHAASPIVSAELPph 80
Cdd:TIGR03819  49 LVGAGPL-EPLLADPGVTDVLVNGPDEVWVDR-GRGLERTDVRFpDEAAVRRLaQRLAAAAGR-RLDDAQPWVDARLP-- 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  81 gegAGERFEGILPPVATA-PCFSIRKPAARIYTLADYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLA 159
Cdd:TIGR03819 124 ---DGTRLHAVLPPVATDgTCLSLRVPRRRTFTLDELVAAGTIPPGVARLLRALVAARLAFLVSGGTGSGKTTLLSALLA 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 160 ELAHlDERVILIEDTRELQCAASDVVALRTR------AGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHP 233
Cdd:TIGR03819 201 LVPP-DERIVLVEDAAELRPDHPHVVRLEARpanvegAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHD 279

                         250       260
                  ....*....|....*....|.
gi 1113611788 234 GGIATVHANSARAALYRLEQL 254
Cdd:TIGR03819 280 GGAGTLHANSPADVPARLEAL 300
VirB11 COG0630
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ...
 38-305 1.55e-41

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440395 [Multi-domain]  Cd Length: 462  Bit Score: 149.85  E-value: 1.55e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  38 GRVETGTRL-DPTQVERIIRLVASHARTEVHAASPIVSAELPPhgegaGERFEGILPPVATA--PCFSIRKPAARIYTLA 114
Cdd:COG0630   193 ERIPTNIVFeSEEELDNFVVKLAQRSGKHISVARPIVDATLPD-----GSRIALTLGPEVSRrgSSFTIRKFREVPLTPI 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 115 DYVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHLDeRVILIEDTRELQCAASDVVALRTR---- 190
Cdd:COG0630   268 DLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDA-KIVTIEDTRELNLPHENWISLVTResfg 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 191 --AGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHpGGIATVHANSARAALYRLEQLVQEsvvtVPQRLIa 268
Cdd:COG0630   347 geEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGH-GVLSTFHADSVESAINRLTSPPIN----VPRTLL- 420

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1113611788 269 EAIDMIVFIA----GRGLARRIETIARVAGLDPDGGYAVFD 305
Cdd:COG0630   421 QALDLVVFQKrvrvGGKRVRRVTSIVEIVGYDPETGEIRTN 461
PRK13900 PRK13900
type IV secretion system ATPase VirB11; Provisional
 16-277 1.43e-39

type IV secretion system ATPase VirB11; Provisional


Pssm-ID: 184381  Cd Length: 332  Bit Score: 141.82  E-value: 1.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  16 DDLVIEIMANPDGALRLDRLGEGRVETGTRLDPTQVERIIRLVASHARTEVHAASPIVSAELPphgegAGERFEGILPPV 95
Cdd:PRK13900   21 EDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLP-----NGYRIQIVFPPA 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  96 --ATAPCFSIRKPAARIYTLADYVRDGILAAEAAQLLAR---------------------AVVDRKTILVAGGTSSGKTT 152
Cdd:PRK13900   96 ceIGQIVYSIRKPSGMQLTLDDYEKMGAFDETATESLVDeddvilnellaekkikeflehAVISKKNIIISGGTSTGKTT 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 153 LANALLAELAHlDERVILIEDTRE--LQCAASDVVALRTRAG----SVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLK 226
Cdd:PRK13900  176 FTNAALREIPA-IERLITVEDAREivLSNHPNRVHLLASKGGqgraKVTTQDLIEACLRLRPDRIIVGELRGAEAFSFLR 254

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1113611788 227 AWNTGHPGGIATVHANSARAALYRLEQLVQESVVTVPQRLIAEAIDMIVFI 277
Cdd:PRK13900  255 AINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDI 305
T2SSE pfam00437
Type II/IV secretion system protein; This family contains components of both the Type II ...
 45-275 2.05e-39

Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.


Pssm-ID: 425681 [Multi-domain]  Cd Length: 269  Bit Score: 139.34  E-value: 2.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  45 RLDPTQVERIIRLVASHARTEVHAASPIVSAELPPHGEGAGERFEGILPPVATAPCFSIR--KPAARIYTLADYvrdGIL 122
Cdd:pfam00437  39 FPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGVRVRVSTLPTAGGEKLVIRllDPSNVALSLDEL---GMT 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 123 AAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHLDERVILIEDTRELQCAASDVVALRTRAGsVSMADLVRS 202
Cdd:pfam00437 116 GAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDENIVTVEDPVEIQLEGINQVQLNARAG-VTFADLLRA 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1113611788 203 TLRLRPDRIIVGEVRGPEALDM-LKAWNTGHPgGIATVHANSARAALYRLEQLVqesvvtVPQRLIAEAIDMIV 275
Cdd:pfam00437 195 ILRQDPDRIMVGEIRDLETAEIaLQAANTGHL-VLSTLHTNSAAGALTRLQDMG------VPPFELASSLLLVI 261
type_II_IV_secretion_ATPases cd19477
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ...
 138-277 8.57e-21

type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410885 [Multi-domain]  Cd Length: 168  Bit Score: 87.45  E-value: 8.57e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 138 KTILVAGGTSSGKTTLANALLAELAHlDERVILIEDTRELQCAASDVVALRTRAGSVSMADLVRSTLRLRPDRIIVGEVR 217
Cdd:cd19477    11 KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRQRPDRIILGELR 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1113611788 218 GPEALDMLKAWNTGHPGGIATVHANSARAALYRLEQLVQESVVTVPQR------LIAEAIDMIVFI 277
Cdd:cd19477    90 SSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN*SSSNSAARNIKfeslieGFKDLIDGIVHI 155
PRK13851 PRK13851
type IV secretion system protein VirB11; Provisional
 46-289 1.76e-19

type IV secretion system protein VirB11; Provisional


Pssm-ID: 172375  Cd Length: 344  Bit Score: 87.26  E-value: 1.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788  46 LDPTQVERIIRLVASHARTEVHAASPIVSAELPphgegAGERFEGILPPVATAPCFS--IRKPAARIYTLAD-------- 115
Cdd:PRK13851   49 LSYDDLEDIAILAGALRKQDVGPRNPLCATELP-----GGERLQICLPPTVPSGTVSltIRRPSSRVSELKEvssrydas 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 116 -----------------YVRDGILAAEAAQLLARAVVDRKTILVAGGTSSGKTTLANALLAELAHlDERVILIEDTRELQ 178
Cdd:PRK13851  124 rwnqwqerrkrrdqldeAILRHYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTLELV 202

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 179 CAASDVVALR-----TRAGSVSMADLVRSTLRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGIATVHANSARAALYRLEQ 253
Cdd:PRK13851  203 IPHENHVRLLyskngAGLGAVTAEHLLQASLRMRPDRILLGEMRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFS 282

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1113611788 254 LVQESV--VTVPQR----LIAEAIDMIVFIAGRGLARRIETI 289
Cdd:PRK13851  283 LVKSSAqgASLEDRtlidMLATAIDVIVPFRAYGDVYEVGEI 324
PulE-GspE-like cd01129
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ...
 140-286 1.37e-15

PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.


Pssm-ID: 410873 [Multi-domain]  Cd Length: 159  Bit Score: 72.90  E-value: 1.37e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGKTTLANALLAELAHLDERVILIEDTRELQCAASDVVALRTRAGsVSMADLVRSTLRLRPDRIIVGEVRGP 219
Cdd:cd01129    14 ILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIG-LTFADALRAILRQDPDIIMVGEIRDA 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1113611788 220 EALDM-LKAWNTGHPgGIATVHANSARAALYRLEQLvqesvvTVPQRLIAEAidMIVFIAGRgLARRI 286
Cdd:cd01129    93 ETAEIaIRAALTGHL-VLSTLHTNDALGAITRLLDM------GIEPFLLASA--LRGVIAQR-LVGRT 150
DotB_TraJ cd19516
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ...
 140-259 1.86e-08

dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.


Pssm-ID: 410924 [Multi-domain]  Cd Length: 179  Bit Score: 53.15  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGKTTLANAL---LAELAHLDERVILIEDTRE-----LQCAASDVVALRTRAGSVSMADLVRSTLRLRPDRI 211
Cdd:cd19516    14 VYVAGATGSGKSTLLAAIyryILENDPPDRKIITYEDPIEfvydgIKSKHSIIVQSQIPRHFKSFAKAVREALRRKPSLI 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1113611788 212 IVGEVRGPEALD-MLKAWNTGHPgGIATVHANSARAALYRLEQLVQESV 259
Cdd:cd19516    94 GVGELRDQETISaAVEASLTGHP-VYSTVHTKSVAETIRRLISLFPPEE 141
PRK10436 PRK10436
hypothetical protein; Provisional
 140-285 4.81e-07

hypothetical protein; Provisional


Pssm-ID: 236694  Cd Length: 462  Bit Score: 51.08  E-value: 4.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGKTTLANALLAELAHLDERVILIEDTRELQCAASDVVALRTRAGsVSMADLVRSTLRLRPDRIIVGEVRGP 219
Cdd:PRK10436  221 ILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAG-LTFQRVLRALLRQDPDVIMVGEIRDG 299

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1113611788 220 EALDM-LKAWNTGHPgGIATVHANSARAALYRLEQLvqesvvTVPQRLIAEAIDMIvfIAGRgLARR 285
Cdd:PRK10436  300 ETAEIaIKAAQTGHL-VLSTLHTNSTSETLVRLQQM------GIARWMLASALKLV--IAQR-LVRK 356
PilT cd01131
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ...
 140-251 5.90e-07

Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.


Pssm-ID: 410875 [Multi-domain]  Cd Length: 223  Bit Score: 49.46  E-value: 5.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGK-TTLANALLAELAHLDERVILIED--------------TRELqcaASDVvalrtragsVSMADLVRSTL 204
Cdd:cd01131    24 VLVTGPTGSGKsTTLAAMIDYINETRSKHIITIEDpiefvhkhkkslinQREV---GRDT---------ESFAAALRAAL 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1113611788 205 RLRPDRIIVGEVRGPEALDM-LKAWNTGHPgGIATVHANSARAALYRL 251
Cdd:cd01131    92 REDPDVILVGEMRDLETIELaLTAAETGHL-VFSTLHTNSAAQTIDRI 138
PulE COG2804
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ...
 140-286 4.98e-06

Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 442055 [Multi-domain]  Cd Length: 561  Bit Score: 47.88  E-value: 4.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGKTTLANALLAELAHLDERVILIEDTRE------LQcaasdvVALRTRAGsVSMADLVRSTLRLRPDRIIV 213
Cdd:COG2804   316 ILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEyqlpgiNQ------VQVNPKIG-LTFASALRSILRQDPDVIMV 388

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1113611788 214 GEVRGPEALDM-LKAWNTGHpggIATVHANSARAALYRLEQLvqesvvTVPQRLIAEAIDMIvfIAGRgLARRI 286
Cdd:COG2804   389 GEIRDLETAEIaVQAALTGHl-vLSTLHTNDAPSAITRLLDM------GVEPFLLASSLLGV--LAQR-LVRRL 452
PilT COG2805
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ...
 140-251 1.23e-04

Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];


Pssm-ID: 442056  Cd Length: 342  Bit Score: 43.16  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113611788 140 ILVAGGTSSGKTTLANALLAELAHLDERVIL-IEDT--------------RElqcaasdvVALRTRagsvSMADLVRSTL 204
Cdd:COG2805   128 VLVTGPTGSGKSTTLAAMIDYINETRAKHIItIEDPiefvhkhkkslinqRE--------VGRDTP----SFANALRAAL 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1113611788 205 RLRPDRIIVGEVRGPEALDM-LKAWNTGHPGgIATVHANSARAALYRL 251
Cdd:COG2805   196 REDPDVILVGEMRDLETIEAaLTAAETGHLV-FATLHTNSAAQTIDRI 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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