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Conserved domains on  [gi|1113633481|gb|OJY92301|]
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MAG: hypothetical protein BGP25_14195 [Lysobacterales bacterium 63-13]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PepSY super family cl41989
Peptidase propeptide and YPEB domain; This region is likely to have an protease inhibitory ...
4-89 4.62e-05

Peptidase propeptide and YPEB domain; This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase _ Bacillus subtilis YPEB.


The actual alignment was detected with superfamily member pfam13670:

Pssm-ID: 455334  Cd Length: 83  Bit Score: 39.60  E-value: 4.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113633481   4 ILIALTVGTLLAGPAFADTTpttqpsnTTTVPAIALTQAEVEGRIAAAGFTEFRLLTFKQGIWKADARGGEKEWVEIYVH 83
Cdd:pfam13670   1 LTALAAAAALLAGAAFAPDC-------CDVPPSDWQPREALVQKLEEQGYKVKKIKVDDGNCYEIYGVDKDGKKVEIYVD 73

                  ....*.
gi 1113633481  84 PITGKV 89
Cdd:pfam13670  74 PKTGEV 79
PepSY super family cl41989
Peptidase propeptide and YPEB domain; This region is likely to have an protease inhibitory ...
98-151 9.88e-04

Peptidase propeptide and YPEB domain; This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase _ Bacillus subtilis YPEB.


The actual alignment was detected with superfamily member pfam13670:

Pssm-ID: 455334  Cd Length: 83  Bit Score: 36.13  E-value: 9.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1113633481  98 LNKQEIEAKITAAGYQnVHDVKFKDGI-WKAEADNGKGQEVNLLIDPDDGSVIGE 151
Cdd:pfam13670  29 QPREALVQKLEEQGYK-VKKIKVDDGNcYEIYGVDKDGKKVEIYVDPKTGEVVKR 82
 
Name Accession Description Interval E-value
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
4-89 4.62e-05

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 39.60  E-value: 4.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113633481   4 ILIALTVGTLLAGPAFADTTpttqpsnTTTVPAIALTQAEVEGRIAAAGFTEFRLLTFKQGIWKADARGGEKEWVEIYVH 83
Cdd:pfam13670   1 LTALAAAAALLAGAAFAPDC-------CDVPPSDWQPREALVQKLEEQGYKVKKIKVDDGNCYEIYGVDKDGKKVEIYVD 73

                  ....*.
gi 1113633481  84 PITGKV 89
Cdd:pfam13670  74 PKTGEV 79
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
98-151 9.88e-04

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 36.13  E-value: 9.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1113633481  98 LNKQEIEAKITAAGYQnVHDVKFKDGI-WKAEADNGKGQEVNLLIDPDDGSVIGE 151
Cdd:pfam13670  29 QPREALVQKLEEQGYK-VKKIKVDDGNcYEIYGVDKDGKKVEIYVDPKTGEVVKR 82
 
Name Accession Description Interval E-value
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
4-89 4.62e-05

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 39.60  E-value: 4.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1113633481   4 ILIALTVGTLLAGPAFADTTpttqpsnTTTVPAIALTQAEVEGRIAAAGFTEFRLLTFKQGIWKADARGGEKEWVEIYVH 83
Cdd:pfam13670   1 LTALAAAAALLAGAAFAPDC-------CDVPPSDWQPREALVQKLEEQGYKVKKIKVDDGNCYEIYGVDKDGKKVEIYVD 73

                  ....*.
gi 1113633481  84 PITGKV 89
Cdd:pfam13670  74 PKTGEV 79
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
98-151 9.88e-04

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 36.13  E-value: 9.88e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1113633481  98 LNKQEIEAKITAAGYQnVHDVKFKDGI-WKAEADNGKGQEVNLLIDPDDGSVIGE 151
Cdd:pfam13670  29 QPREALVQKLEEQGYK-VKKIKVDDGNcYEIYGVDKDGKKVEIYVDPKTGEVVKR 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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