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Conserved domains on  [gi|1125351482|gb|OLC90957|]
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hypothetical protein AUJ03_00070 [Deltaproteobacteria bacterium 13_1_40CM_3_71_4]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PhaF super family cl43985
Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport ...
 46-107 2.88e-05

Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport and catabolism, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG3937:

Pssm-ID: 443138 [Multi-domain]  Cd Length: 103  Bit Score: 39.78  E-value: 2.88e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1125351482  46 RKRAEKAIEELEERRARIMATFEEQAGRLVETVVKGLNLVTESEVRELRRRVAHLERRVDQI 107
Cdd:COG3937    38 EEEAKKFVDELVEKGEEEKEELEEKIEEQVEEALEKLGLATKEEVDELEERIDRLEKQLREL 99
 
Name Accession Description Interval E-value
PhaF COG3937
Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport ...
 46-107 2.88e-05

Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport and catabolism, Signal transduction mechanisms];


Pssm-ID: 443138 [Multi-domain]  Cd Length: 103  Bit Score: 39.78  E-value: 2.88e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1125351482  46 RKRAEKAIEELEERRARIMATFEEQAGRLVETVVKGLNLVTESEVRELRRRVAHLERRVDQI 107
Cdd:COG3937    38 EEEAKKFVDELVEKGEEEKEELEEKIEEQVEEALEKLGLATKEEVDELEERIDRLEKQLREL 99
PHA_synth_III_E pfam09712
Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); This entry represents the ...
 49-107 1.84e-04

Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); This entry represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species.


Pssm-ID: 370627  Cd Length: 314  Bit Score: 38.98  E-value: 1.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1125351482  49 AEKAIEE--LEERRARIMA-------TFEEQAGRLVETVVKGLNLVTESEVRELRRRVAHLERRVDQI 107
Cdd:pfam09712 246 AEEVYAEyfASEEYAKIYGrlvnaqmALKQQMQRLVEEVLEALNMPTRSELDTLHRRIQELRREVRRL 313
 
Name Accession Description Interval E-value
PhaF COG3937
Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport ...
 46-107 2.88e-05

Polyhydroxyalkanoate synthesis regulator phasin [Secondary metabolites biosynthesis, transport and catabolism, Signal transduction mechanisms];


Pssm-ID: 443138 [Multi-domain]  Cd Length: 103  Bit Score: 39.78  E-value: 2.88e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1125351482  46 RKRAEKAIEELEERRARIMATFEEQAGRLVETVVKGLNLVTESEVRELRRRVAHLERRVDQI 107
Cdd:COG3937    38 EEEAKKFVDELVEKGEEEKEELEEKIEEQVEEALEKLGLATKEEVDELEERIDRLEKQLREL 99
PHA_synth_III_E pfam09712
Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); This entry represents the ...
 49-107 1.84e-04

Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); This entry represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species.


Pssm-ID: 370627  Cd Length: 314  Bit Score: 38.98  E-value: 1.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1125351482  49 AEKAIEE--LEERRARIMA-------TFEEQAGRLVETVVKGLNLVTESEVRELRRRVAHLERRVDQI 107
Cdd:pfam09712 246 AEEVYAEyfASEEYAKIYGrlvnaqmALKQQMQRLVEEVLEALNMPTRSELDTLHRRIQELRREVRRL 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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