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Conserved domains on  [gi|1125468616|gb|OLD92686|]
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peptidoglycan-associated lipoprotein [Alphaproteobacteria bacterium 13_1_20CM_4_65_11]

Protein Classification

peptidoglycan-associated lipoprotein( domain architecture ID 10798633)

peptidoglycan-associated lipoprotein is part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity

Gene Ontology:  GO:0051301|GO:0009279
SCOP:  4001470

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 59-160 5.36e-59

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


:

Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 178.52  E-value: 5.36e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  59 RVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYG 138
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 1125468616 139 KERPEIPHSDDSSYAQNRRGVT 160
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 59-160 5.36e-59

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 178.52  E-value: 5.36e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  59 RVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYG 138
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 1125468616 139 KERPEIPHSDDSSYAQNRRGVT 160
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 45-157 3.31e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 144.93  E-value: 3.31e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  45 GPGSQQDLAATAGDRVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVA 124
Cdd:COG2885   174 ALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS 253

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1125468616 125 LGIPAGRIQTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:COG2885   254 KGIPASRITAVGYGESRPVASNDTEEGRAKNRR 286
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 59-157 2.02e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.22  E-value: 2.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  59 RVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYG 138
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90
                  ....*....|....*....
gi 1125468616 139 KERPEIPHSDDSSYAQNRR 157
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRR 101
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
60-159 6.44e-36

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 122.29  E-value: 6.44e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYGK 139
Cdd:PRK10802   71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGK 150

                          90       100
                  ....*....|....*....|
gi 1125468616 140 ERPEIPHSDDSSYAQNRRGV 159
Cdd:PRK10802  151 EKPAVLGHDEAAYAKNRRAV 170
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 62-155 6.89e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.05  E-value: 6.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  62 FDYDQTDIKPEGQQTLQKQAEWLRRYPNI-AVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYGKE 140
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1125468616 141 RPEIPHSDDSSYAQN 155
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 59-160 5.36e-59

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 178.52  E-value: 5.36e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  59 RVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYG 138
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 1125468616 139 KERPEIPHSDDSSYAQNRRGVT 160
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 45-157 3.31e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 144.93  E-value: 3.31e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  45 GPGSQQDLAATAGDRVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVA 124
Cdd:COG2885   174 ALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS 253

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1125468616 125 LGIPAGRIQTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:COG2885   254 KGIPASRITAVGYGESRPVASNDTEEGRAKNRR 286
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 59-157 2.02e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.22  E-value: 2.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  59 RVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYG 138
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90
                  ....*....|....*....
gi 1125468616 139 KERPEIPHSDDSSYAQNRR 157
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRR 101
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
60-159 6.44e-36

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 122.29  E-value: 6.44e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYGK 139
Cdd:PRK10802   71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGK 150

                          90       100
                  ....*....|....*....|
gi 1125468616 140 ERPEIPHSDDSSYAQNRRGV 159
Cdd:PRK10802  151 EKPAVLGHDEAAYAKNRRAV 170
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 62-155 6.89e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.05  E-value: 6.89e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  62 FDYDQTDIKPEGQQTLQKQAEWLRRYPNI-AVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYGKE 140
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 1125468616 141 RPEIPHSDDSSYAQN 155
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
58-157 6.70e-20

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 81.04  E-value: 6.70e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  58 DRVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIaVTIEGHCDER--GTREY--NLALGERRAQAVKNVLVALGIPAGRIQ 133
Cdd:COG1360    59 DRVLFDSGSAELTPEGRELLDKIAAVLAEVPNR-IRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLS 137

                          90       100
                  ....*....|....*....|....
gi 1125468616 134 TISYGKERPEIPHSDDSSYAQNRR 157
Cdd:COG1360   138 AVGYGDTRPLAPNDTPEGRARNRR 161
PRK10510 PRK10510
OmpA family lipoprotein;
60-157 2.34e-18

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 78.38  E-value: 2.34e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTISYGK 139
Cdd:PRK10510  114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                          90
                  ....*....|....*...
gi 1125468616 140 ERPEIPHSDDSSYAQNRR 157
Cdd:PRK10510  194 ANPIASNSTAEGKAQNRR 211
PRK10808 PRK10808
outer membrane protein A; Reviewed
 60-142 3.64e-14

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 68.56  E-value: 3.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQK---QAEWLRryPNI-AVTIEGHCDERGTREYNLALGERRAQAVKNVLVALGIPAGRIQTI 135
Cdd:PRK10808  226 VLFNFNKATLKPEGQQALDQlysQLSNLD--PKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISAR 303


                  ....*..
gi 1125468616 136 SYGKERP 142
Cdd:PRK10808  304 GMGKSNP 310
PRK09039 PRK09039
peptidoglycan -binding protein;
57-157 2.17e-11

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 60.36  E-value: 2.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  57 GDR------VFFDYDQTDIKPEGQQTLQKQAEWLRrypNIAVTI----------EGHCDER---GTREY--NLALGERRA 115
Cdd:PRK09039  217 GDRfvfqseVLFPTGSAELNPEGQAEIAKLAAALI---ELAKEIppeinwvlrvDGHTDNVplsGTGRFrdNWELSSARA 293

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1125468616 116 QAVKNVLVALGIPAGRIQTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK09039  294 ISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRR 335
PRK09967 PRK09967
OmpA family protein;
58-162 2.59e-09

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 53.06  E-value: 2.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  58 DRVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNIAVTIEGHCDERGTREYNLALGERRAQAVKNVLvALG--IPAGRIQTI 135
Cdd:PRK09967   52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAW-AMGgqIPRSNLTTQ 130

                          90       100
                  ....*....|....*....|....*..
gi 1125468616 136 SYGKERPEIPHSDDSSYAQNRRgVTTV 162
Cdd:PRK09967  131 GLGKKYPIASNKTAQGRAENRR-VAVV 156
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 58-162 1.08e-08

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 52.37  E-value: 1.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  58 DRVFFDYDQTDIKPEGQQTLQKQAEWLRRYPNiAVTIEGHCDERGTREYNLA-----LGERRAQAVKNVLVALGIPAGRI 132
Cdd:PRK06742  115 DNLIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSRPIHNDKFPsnwelSSARAANMIHHLIEVYNVDDKRL 193

                          90       100       110
                  ....*....|....*....|....*....|
gi 1125468616 133 QTISYGKERPEIPHSDDSSYAQNRRGVTTV 162
Cdd:PRK06742  194 AAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK08126 PRK08126
hypothetical protein; Provisional
 57-157 2.21e-07

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 49.31  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  57 GDRVFFDyDQTDIKPEGQQTLQKQAEWLRRYPNiAVTIEGHCDER--GTREY--NLALGERRAQAVKNVLVALGIPAGRI 132
Cdd:PRK08126  323 GDAMFVP-GQATVNPAMGPLIAKIAREIARVGG-KVTVTGHTDNQpiRSAQFasNLVLSEKRAAQVAQMLQSAGVPASRL 400

                          90       100
                  ....*....|....*....|....*
gi 1125468616 133 QTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK08126  401 EAVGKGDAQPVADNRTPQGRAQNRR 425
motB PRK08457
flagellar motor protein MotB; Reviewed
 58-157 2.82e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 48.56  E-value: 2.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  58 DRVFFDYDQTDI-KPEGQQTLQKQAEWLRRYP-NIAVTIEGHCDE---RGTR-EYNLALGERRAQAVKNVLVALGIPAGR 131
Cdd:PRK08457  122 SKLLFENGSAEIiNADMMDYLKRIAKIITKLPkQVKINVRGYTDNsplNKSRyKDHYELAAARAYNVMKVLIQYGINPNR 201

                          90       100
                  ....*....|....*....|....*.
gi 1125468616 132 IQTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK08457  202 LSFSSYGSNNPIAPNDSLENRLKNNR 227
PRK09040 PRK09040
hypothetical protein; Provisional
 60-157 3.18e-07

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 48.09  E-value: 3.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQKQAEWLRRY---PNIAVTIEGHCDER----GTREY--NLALGERRAQAVKNVLVALGIPAG 130
Cdd:PRK09040   90 VLFALNSDQLQPEGRELLKSLAGPLAAYlraRDEILMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPAS 169

                          90       100
                  ....*....|....*....|....*..
gi 1125468616 131 RIQTISYGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK09040  170 SVFAAAFGSEQPVASNADDEGRAKNRR 196
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 60-157 7.52e-07

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 47.31  E-value: 7.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  60 VFFDYDQTDIKPEGQQTLQKQAEWLRRYPNiAVTIEGHCDER--GTREY--NLALGERRAQAVKNVLVALGIPAGRIQTI 135
Cdd:PRK09038  135 LLFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAV 213

                          90       100
                  ....*....|....*....|..
gi 1125468616 136 SYGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK09038  214 GYGEFQPVADNDTAEGRARNRR 235
motB PRK05996
MotB family protein;
91-157 1.18e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 38.14  E-value: 1.18e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1125468616  91 AVTIEGHCDERGTR--EY-NLALGERRAQAVKNVLVALGIPAGRIQTIS-YGKERPEIPhsDDSSYAQNRR 157
Cdd:PRK05996  346 AVIIRGHTDARPFKsaTYdNWRLSTARAQSAYYMLVRGGLDEKRIEQVEgFADRRPKLP--NDPNAAANRR 414
PRK07033 PRK07033
DotU family type VI secretion system protein;
62-157 2.49e-03

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 37.34  E-value: 2.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125468616  62 FDYDQTDIKPEGQQTLQKQAEWLRRYP-NIAVTieGHCDERGTREY----NLALGERRAQAVKNVLVALGIPAGRIQTIS 136
Cdd:PRK07033  318 FASASTSVRDRYQPVLARVADALNQVKgNVLVT--GYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPERVTAEG 395

                          90       100
                  ....*....|....*....|.
gi 1125468616 137 YGKERPEIPHSDDSSYAQNRR 157
Cdd:PRK07033  396 RGDSDPVAPNDSAENRARNRR 416
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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