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Conserved domains on  [gi|1150940380|gb|OOO82010|]
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chaperone modulatory protein CbpM [Shigella boydii]

Protein Classification

chaperone modulator CbpM( domain architecture ID 10013472)

chaperone modulator CbpM interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10265 PRK10265
chaperone modulator CbpM;
1-101 5.22e-65

chaperone modulator CbpM;


:

Pssm-ID: 182346  Cd Length: 101  Bit Score: 191.10  E-value: 5.22e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150940380   1 MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDI 80
Cdd:PRK10265    1 MANVTVTFTITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLLDEI 80
                          90       100
                  ....*....|....*....|.
gi 1150940380  81 AHLKQENRLLRQRLSRFVAHP 101
Cdd:PRK10265   81 AHLKQENRLLRQRLSRFVAHP 101
 
Name Accession Description Interval E-value
PRK10265 PRK10265
chaperone modulator CbpM;
1-101 5.22e-65

chaperone modulator CbpM;


Pssm-ID: 182346  Cd Length: 101  Bit Score: 191.10  E-value: 5.22e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150940380   1 MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDI 80
Cdd:PRK10265    1 MANVTVTFTITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLLDEI 80
                          90       100
                  ....*....|....*....|.
gi 1150940380  81 AHLKQENRLLRQRLSRFVAHP 101
Cdd:PRK10265   81 AHLKQENRLLRQRLSRFVAHP 101
MerR_2 pfam13591
MerR HTH family regulatory protein;
8-92 5.07e-28

MerR HTH family regulatory protein;


Pssm-ID: 433334  Cd Length: 84  Bit Score: 96.82  E-value: 5.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150940380   8 FTITEFCLHTGISEEELNEIVGLGVVEPrEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQEN 87
Cdd:pfam13591   1 ITITEFCERTGIEEEFLIELVEHGLIEP-ETVGEEWYFSLSQLYRLEKAVRLYRDLDINLEGIAVILDLLDRIEHLQREI 79

                  ....*
gi 1150940380  88 RLLRQ 92
Cdd:pfam13591  80 RSLRN 84
 
Name Accession Description Interval E-value
PRK10265 PRK10265
chaperone modulator CbpM;
1-101 5.22e-65

chaperone modulator CbpM;


Pssm-ID: 182346  Cd Length: 101  Bit Score: 191.10  E-value: 5.22e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150940380   1 MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDI 80
Cdd:PRK10265    1 MANVTVTFTITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLLDEI 80
                          90       100
                  ....*....|....*....|.
gi 1150940380  81 AHLKQENRLLRQRLSRFVAHP 101
Cdd:PRK10265   81 AHLKQENRLLRQRLSRFVAHP 101
MerR_2 pfam13591
MerR HTH family regulatory protein;
8-92 5.07e-28

MerR HTH family regulatory protein;


Pssm-ID: 433334  Cd Length: 84  Bit Score: 96.82  E-value: 5.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150940380   8 FTITEFCLHTGISEEELNEIVGLGVVEPrEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQEN 87
Cdd:pfam13591   1 ITITEFCERTGIEEEFLIELVEHGLIEP-ETVGEEWYFSLSQLYRLEKAVRLYRDLDINLEGIAVILDLLDRIEHLQREI 79

                  ....*
gi 1150940380  88 RLLRQ 92
Cdd:pfam13591  80 RSLRN 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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