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Conserved domains on  [gi|1193674421|gb|OTV86548|]
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hypothetical protein BA753_23570 (plasmid) [Salmonella enterica subsp. enterica serovar Newport]

Protein Classification

Ig-like domain-containing protein; Ig-like domain repeat protein( domain architecture ID 10980281)

bacterial immunoglobulin (Ig)-like domain-containing protein may be a cell surface protein and may play a vital role in host-pathogen interactions; similar to Bacteroides fragilis putative transglutaminase-family protein| bacterial Ig-like (BIg) domain-containing protein similar to Pseudomonas putida surface adhesion protein; BIg domains (group 3) are found in a variety of bacterial surface proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 545-697 4.21e-71

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


:

Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.04  E-value: 4.21e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  545 ENYTYQWDLKTLPEGQYSLVAAA-EEMHGPLTRQPMFQITSDRTPPTMTL----SVADGAAIQTLDDVVITLADAIDPsP 619
Cdd:pfam13750    1 GNYTYTFDLNRLPEGKYNLVLVAmDTFHNPTTLSPLQTILVDNTPPTVSIfdgkPISDGAVVNGLENLRITLADDATK-S 79

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1193674421  620 KLTSIALVGGPANDKVQLSWREESKGRFRLEYPVMFPSLKEGESYTLTVSGEDAQGNAVQKAVGFEYKPRQVMLADGM 697
Cdd:pfam13750   80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
DUF4165 pfam13752
Domain of unknown function (DUF4165);
23-141 2.22e-59

Domain of unknown function (DUF4165);


:

Pssm-ID: 433454  Cd Length: 121  Bit Score: 199.87  E-value: 2.22e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421   23 AHAELLEYTFKAPDGTQRSLTPNANYANPTGNISFALSAGIDRKVKISVL--RSDGTVVSTATSHLLGATDRITVGGKSY 100
Cdd:pfam13752    1 AHADLLEYGFKAPAGDQINLEPGTGFANPSGGISFALSAGIDRKLKIAVLanGADAPVFSKASSHLLGASDRISVGGDNY 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1193674421  101 YGAELQLPAPVGGAYTIRAEILASDGSTVQTDEYPLTVDVT 141
Cdd:pfam13752   81 YAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-259 1.97e-41

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


:

Pssm-ID: 403457  Cd Length: 122  Bit Score: 148.74  E-value: 1.97e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  142 PPTYSSLAP-VYSNYGQVTSGDVWKLGLGGSEDNAFLLSGISDESPIKGVKAKLYRQDGSLYKDVSVNYDDANGQARQSF 220
Cdd:pfam12245    1 PPTASSLSPtQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1193674421  221 ----QSGFFPASdLDEVFTLQFEISDSAGNSYLSPRQKVMFDS 259
Cdd:pfam12245   81 gsakQSGFFPSS-LDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
 
Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 545-697 4.21e-71

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.04  E-value: 4.21e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  545 ENYTYQWDLKTLPEGQYSLVAAA-EEMHGPLTRQPMFQITSDRTPPTMTL----SVADGAAIQTLDDVVITLADAIDPsP 619
Cdd:pfam13750    1 GNYTYTFDLNRLPEGKYNLVLVAmDTFHNPTTLSPLQTILVDNTPPTVSIfdgkPISDGAVVNGLENLRITLADDATK-S 79

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1193674421  620 KLTSIALVGGPANDKVQLSWREESKGRFRLEYPVMFPSLKEGESYTLTVSGEDAQGNAVQKAVGFEYKPRQVMLADGM 697
Cdd:pfam13750   80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
DUF4165 pfam13752
Domain of unknown function (DUF4165);
23-141 2.22e-59

Domain of unknown function (DUF4165);


Pssm-ID: 433454  Cd Length: 121  Bit Score: 199.87  E-value: 2.22e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421   23 AHAELLEYTFKAPDGTQRSLTPNANYANPTGNISFALSAGIDRKVKISVL--RSDGTVVSTATSHLLGATDRITVGGKSY 100
Cdd:pfam13752    1 AHADLLEYGFKAPAGDQINLEPGTGFANPSGGISFALSAGIDRKLKIAVLanGADAPVFSKASSHLLGASDRISVGGDNY 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1193674421  101 YGAELQLPAPVGGAYTIRAEILASDGSTVQTDEYPLTVDVT 141
Cdd:pfam13752   81 YAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-259 1.97e-41

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 403457  Cd Length: 122  Bit Score: 148.74  E-value: 1.97e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  142 PPTYSSLAP-VYSNYGQVTSGDVWKLGLGGSEDNAFLLSGISDESPIKGVKAKLYRQDGSLYKDVSVNYDDANGQARQSF 220
Cdd:pfam12245    1 PPTASSLSPtQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1193674421  221 ----QSGFFPASdLDEVFTLQFEISDSAGNSYLSPRQKVMFDS 259
Cdd:pfam12245   81 gsakQSGFFPSS-LDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
 
Name Accession Description Interval E-value
Big_3_3 pfam13750
Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like ...
 545-697 4.21e-71

Bacterial Ig-like domain (group 3); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 404614 [Multi-domain]  Cd Length: 157  Bit Score: 235.04  E-value: 4.21e-71
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  545 ENYTYQWDLKTLPEGQYSLVAAA-EEMHGPLTRQPMFQITSDRTPPTMTL----SVADGAAIQTLDDVVITLADAIDPsP 619
Cdd:pfam13750    1 GNYTYTFDLNRLPEGKYNLVLVAmDTFHNPTTLSPLQTILVDNTPPTVSIfdgkPISDGAVVNGLENLRITLADDATK-S 79

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1193674421  620 KLTSIALVGGPANDKVQLSWREESKGRFRLEYPVMFPSLKEGESYTLTVSGEDAQGNAVQKAVGFEYKPRQVMLADGM 697
Cdd:pfam13750   80 SLTSITLSGGPANDKVYLSWVSLGKGRYRLNYPRLFPSLEEGESYTLTVTAEDEQGNAKTKSVGFEYLPNNLVQVGNL 157
DUF4165 pfam13752
Domain of unknown function (DUF4165);
23-141 2.22e-59

Domain of unknown function (DUF4165);


Pssm-ID: 433454  Cd Length: 121  Bit Score: 199.87  E-value: 2.22e-59
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421   23 AHAELLEYTFKAPDGTQRSLTPNANYANPTGNISFALSAGIDRKVKISVL--RSDGTVVSTATSHLLGATDRITVGGKSY 100
Cdd:pfam13752    1 AHADLLEYGFKAPAGDQINLEPGTGFANPSGGISFALSAGIDRKLKIAVLanGADAPVFSKASSHLLGASDRISVGGDNY 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1193674421  101 YGAELQLPAPVGGAYTIRAEILASDGSTVQTDEYPLTVDVT 141
Cdd:pfam13752   81 YAAEFQLPALPAGAYLVKAEILASAGAIVQTDEVPLTIDTA 121
Big_3_2 pfam12245
Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. ...
 142-259 1.97e-41

Bacterial Ig-like domain; This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.


Pssm-ID: 403457  Cd Length: 122  Bit Score: 148.74  E-value: 1.97e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1193674421  142 PPTYSSLAP-VYSNYGQVTSGDVWKLGLGGSEDNAFLLSGISDESPIKGVKAKLYRQDGSLYKDVSVNYDDANGQARQSF 220
Cdd:pfam12245    1 PPTASSLSPtQDSGYGMVTSGGVWELGLGAESQNSLRLSGIDDASGIDSAKAFVIDSDGSVYSSVNASYDLGSGTASIPW 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1193674421  221 ----QSGFFPASdLDEVFTLQFEISDSAGNSYLSPRQKVMFDS 259
Cdd:pfam12245   81 gsakQSGFFPSS-LDEEFTLGFEIYDKAGNKTVIPSQKFVFDS 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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