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Conserved domains on  [gi|1194007201|gb|OTY09435|]
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iron ABC transporter [Bacillus thuringiensis serovar muju]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
31-334 1.43e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.09  E-value: 1.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  31 AMVLGAADTSIKDVWLALTSSAKGDKI-SIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAAL 109
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGDPTAdLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 110 ALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGmAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKISQ--DVSLWT 187
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLA-RRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQlrSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 188 AGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGL 267
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194007201 268 MVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRKGG 334
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
31-334 1.43e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.09  E-value: 1.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  31 AMVLGAADTSIKDVWLALTSSAKGDKI-SIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAAL 109
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGDPTAdLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 110 ALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGmAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKISQ--DVSLWT 187
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLA-RRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQlrSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 188 AGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGL 267
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194007201 268 MVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRKGG 334
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
23-332 5.71e-72

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 225.48  E-value: 5.71e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  23 AFFLIFMVAMVLGAADTSIKDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLS 102
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 103 GGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGMaKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYF--KIS 180
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSR-GRGGASPLRLILAGIAVSALLSALTSLLLLLLnpEAL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 181 QDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVG 260
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1194007201 261 NMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRK 332
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
43-334 1.04e-51

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 173.73  E-value: 1.04e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  43 DVWLALTSSAKGDKISII-REIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFNPS-IS 120
Cdd:PRK11228   29 DALNALLPGHTPTLPEALvQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTpFA 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 121 YLYLTLACFIGAAVGAIMVFGIGMAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKI-SQDVSLWTAGGVIGTTWSQL 199
Cdd:PRK11228  109 GYSLAFIAACGGGLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDhAYGIFYWLAGGVSHARWQEV 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 200 KVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGP 279
Cdd:PRK11228  189 WQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGY 268
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1194007201 280 DYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRKGG 334
Cdd:PRK11228  269 DQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRRG 323
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
28-333 1.65e-46

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 160.41  E-value: 1.65e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  28 FMVAMVLGAADTSIKDVW------LALTSSAKGDKISIIR-----EIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADP 96
Cdd:TIGR03869   6 LVVAVTIGPADISVGEVWrsvaahLGRGEGFPGVALSRLQdaivwDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADP 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  97 GLLGLSGGANAALALTLAFNPSISylyLTLACFIGAAVGAIMVFGIGMAkKGGLSPLRIVLAGAAVSAFLLAISEGVgIY 176
Cdd:TIGR03869  86 YLLGLSSGASLGAVAVLVLGVAVL---LPVAAFAGALLALAATLGLART-LGTLTPTRTILAGLAVSQLCAAVTSFV-IF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 177 FKISQD----VSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLA 252
Cdd:TIGR03869 161 WSATGDsyreILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 253 GASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRK 332
Cdd:TIGR03869 241 GALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYR 320

                  .
gi 1194007201 333 G 333
Cdd:TIGR03869 321 S 321
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
69-330 4.69e-42

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 146.93  E-value: 4.69e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  69 VAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIgmAKKG 148
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLL--ASRG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 149 GLSPLRIVLAGAAVSAFLLAISEGVGIYF-KISQDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSE 227
Cdd:cd06550    80 GLSPSKLILIGIVLSAFFSAGVILISLLSdDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 228 EVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTIN 307
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239
                         250       260
                  ....*....|....*....|...
gi 1194007201 308 aPYETPVAAIVAIVGLPFFLFIV 330
Cdd:cd06550   240 -PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
31-334 1.43e-88

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 268.09  E-value: 1.43e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  31 AMVLGAADTSIKDVWLALTSSAKGDKI-SIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAAL 109
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGPDGDPTAdLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 110 ALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGmAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKISQ--DVSLWT 187
Cdd:COG0609    81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLA-RRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQlrSIVFWL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 188 AGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGL 267
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194007201 268 MVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRKGG 334
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
23-332 5.71e-72

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 225.48  E-value: 5.71e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  23 AFFLIFMVAMVLGAADTSIKDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLS 102
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 103 GGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGMaKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYF--KIS 180
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSR-GRGGASPLRLILAGIAVSALLSALTSLLLLLLnpEAL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 181 QDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVG 260
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1194007201 261 NMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRK 332
Cdd:pfam01032 240 PIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
43-334 1.04e-51

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 173.73  E-value: 1.04e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  43 DVWLALTSSAKGDKISII-REIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFNPS-IS 120
Cdd:PRK11228   29 DALNALLPGHTPTLPEALvQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTpFA 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 121 YLYLTLACFIGAAVGAIMVFGIGMAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKI-SQDVSLWTAGGVIGTTWSQL 199
Cdd:PRK11228  109 GYSLAFIAACGGGLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDhAYGIFYWLAGGVSHARWQEV 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 200 KVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGP 279
Cdd:PRK11228  189 WQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGY 268
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1194007201 280 DYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRKGG 334
Cdd:PRK11228  269 DQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRRG 323
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
17-335 2.23e-51

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 180.42  E-value: 2.23e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  17 LILSIIAFFLIFMVAMVLGAADTSIKDVWLAltssakGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADP 96
Cdd:PRK10577  356 AWLLALGLLLLLALVVALSFGRDAHGWNWLS------GQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASP 429
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  97 GLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIgmAKKGGLSPLRIVLAGAAVSAFLLAI------S 170
Cdd:PRK10577  430 EVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLL--ARRGGFAPERLLLTGIALSALFTALiqlllaS 507
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 171 EGVGIYFKISqdvslWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIIL 250
Cdd:PRK10577  508 GDPRAAQLLT-----WLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAAL 582
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 251 LAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIV 330
Cdd:PRK10577  583 LTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLL 662

                  ....*
gi 1194007201 331 RKGGK 335
Cdd:PRK10577  663 RRSRR 667
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
1-336 6.77e-49

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 166.81  E-value: 6.77e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201   1 MTKEHDNTRSIAFTYKLILSIIAFFLifmvAMVLGAADTSIKDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAV 80
Cdd:PRK10441    1 MSGSVAVTRAIAVPGLLLLLIIATAL----SLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  81 SGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGMAKKGGLSPLRIVLAGA 160
Cdd:PRK10441   77 AGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 161 AVSAFLLAISEGVGIYFKISQD-VSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIV 239
Cdd:PRK10441  157 ALAAVLEGLTSGIALLNPDVYDqLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVAR 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 240 IKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTInAPYETPVAAIVA 319
Cdd:PRK10441  237 TQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLL-VPGELRVSVVSA 315
                         330
                  ....*....|....*..
gi 1194007201 320 IVGLPFFLFIVRKGGKM 336
Cdd:PRK10441  316 FIGAPVLIFLVRRKTRG 332
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
15-336 1.74e-47

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 162.71  E-value: 1.74e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  15 YKLILSIIAFFLIFMVAMVLGaadtsikDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLA 94
Cdd:COG4139    13 RWLLLLLLLLLLLFVLSLCAG-------EVWIPPTQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLA 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  95 DPGLLGLSGGANAALALTLAFNPS-ISYLYLTLACFIGAAVgaIMVFGIGMAKKGgLSPLRIVLAGAAVSAFLLAISEgV 173
Cdd:COG4139    86 EPGLLGISNGAGVGLVLVVLLGGGlLPPWLLSLAAIAGALL--VTLLLLAFARRR-LSNARLLLIGVALGIICSAIMT-W 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 174 GIYFKISQDVS---LWTAGGVIGTTWSQLkVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIIL 250
Cdd:COG4139   162 AVYFSSSLDLRqlmYWMMGSFGGVDWRQL-WLLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 251 LAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIV 330
Cdd:COG4139   241 LVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLL 320

                  ....*.
gi 1194007201 331 RKGGKM 336
Cdd:COG4139   321 LRRRKI 326
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
28-333 1.65e-46

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 160.41  E-value: 1.65e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  28 FMVAMVLGAADTSIKDVW------LALTSSAKGDKISIIR-----EIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADP 96
Cdd:TIGR03869   6 LVVAVTIGPADISVGEVWrsvaahLGRGEGFPGVALSRLQdaivwDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADP 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  97 GLLGLSGGANAALALTLAFNPSISylyLTLACFIGAAVGAIMVFGIGMAkKGGLSPLRIVLAGAAVSAFLLAISEGVgIY 176
Cdd:TIGR03869  86 YLLGLSSGASLGAVAVLVLGVAVL---LPVAAFAGALLALAATLGLART-LGTLTPTRTILAGLAVSQLCAAVTSFV-IF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 177 FKISQD----VSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLA 252
Cdd:TIGR03869 161 WSATGDsyreILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 253 GASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFIVRK 332
Cdd:TIGR03869 241 GALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYR 320

                  .
gi 1194007201 333 G 333
Cdd:TIGR03869 321 S 321
btuC PRK09535
cobalamin ABC transporter permease BtuC;
59-332 2.13e-45

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 158.38  E-value: 2.13e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  59 IIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFnPSISYLYLTLACFIGAAVGAIM 138
Cdd:PRK09535   90 IVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVL-PLAVPFGLQAAAFAGALVAAFG 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 139 VFGIgmAKKGGLSPL-RIVLAGAAVSAFLLAISEGVGIYFKIS-QDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILL 216
Cdd:PRK09535  169 VYAI--ATENGRTPVaTLLLAGVAVQTFLGAVISYLLLHSGESlRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAY 246
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 217 AKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFM 296
Cdd:PRK09535  247 ARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFL 326
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1194007201 297 LLADTIGRTinAPYETPVAAIVAIVGLPFFLFIVRK 332
Cdd:PRK09535  327 VATDTVARS--GPAEVPVGIVTAALGAPFFLYLLRT 360
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
17-329 8.89e-44

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 152.89  E-value: 8.89e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  17 LILSIIAFFLIFMVAMVLGAADTSIKDVWLALTSSAKGDkiSIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADP 96
Cdd:PRK09777    6 VIFITLALAGCALLSLRMGVIPLPWRALLTDWQAGDEHY--YVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  97 GLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGmakkGGLSPLRIVLAGAAVSAFLLAISEgvgiY 176
Cdd:PRK09777   84 DILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLA----GTHQPMKLALTGVALSALWASLTD----Y 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 177 FKIS--QDVS---LWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILL 251
Cdd:PRK09777  156 LMLSrpQDINnalLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVAL 235
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1194007201 252 AGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFI 329
Cdd:PRK09777  236 TATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWL 313
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
17-333 1.26e-43

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 159.23  E-value: 1.26e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  17 LILSIIAFFLIFMVAMVLGAADTSIKDVWLALTSSAKGDKISII-REIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLAD 95
Cdd:PRK10577   14 ALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLlHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLAS 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  96 PGLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIGMAKkgGLSPLRIVLAGAAVSAFLLAISEGVGI 175
Cdd:PRK10577   94 PTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALAGGK--RLSPLRLVLAGMVVSLYLGALTTLLLL 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 176 YFK-ISQDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGA 254
Cdd:PRK10577  172 FNEqYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAA 251
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 255 SVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPY--ETPVAAIVAIVGLPFFLFIVRK 332
Cdd:PRK10577  252 VVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGgeLLPTGAVTALIGAPLLLWLLPR 331

                  .
gi 1194007201 333 G 333
Cdd:PRK10577  332 L 332
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
25-329 9.38e-43

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 151.04  E-value: 9.38e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  25 FLIFMVAMVLGAADTSIKDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGG 104
Cdd:COG4779    34 LALAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPDIIGITAG 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 105 ANAALALTLAFNPSiSYLYLTLACFIGAAVGAIMVFgiGMAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIYFKI--SQD 182
Cdd:COG4779   114 ASAGAVAAIVVLGG-SGLAVALGALAGGLATALLVY--LLAWRGGVSGYRLILVGIGVSAMLTAVNSYLLTRADLedAQS 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 183 VSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGASVALVGNM 262
Cdd:COG4779   191 AAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAVATAAAGPI 270
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1194007201 263 AFIGLMVPHMVRPIVGPDYRFVIPmSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFLFI 329
Cdd:COG4779   271 AFVALAAPQIARRLTRSPGPPLLP-SALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLWL 336
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
69-330 4.69e-42

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 146.93  E-value: 4.69e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  69 VAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFGIgmAKKG 148
Cdd:cd06550     2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLL--ASRG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 149 GLSPLRIVLAGAAVSAFLLAISEGVGIYF-KISQDVSLWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSE 227
Cdd:cd06550    80 GLSPSKLILIGIVLSAFFSAGVILISLLSdDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 228 EVAIGLGQKIIVIKTILFIIIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTIN 307
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239
                         250       260
                  ....*....|....*....|...
gi 1194007201 308 aPYETPVAAIVAIVGLPFFLFIV 330
Cdd:cd06550   240 -PSELPVGPVTALLGAPYFLYLL 261
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
17-327 4.85e-42

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 148.56  E-value: 4.85e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  17 LILSIIAFFLIFMVAMVLGaadtsikDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADP 96
Cdd:PRK03784   18 LLGLSVLLLLALLLSLCAG-------EQWISPGDWLSPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEP 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  97 GLLGLSGGANAALALTLAFNPSISYLYLTLACFIGAAVGAIMVFgIGMAKKGGLSPLRIVLAGAAVSAFLLAISEGvGIY 176
Cdd:PRK03784   91 GLLGVSNGAGVALVAAVLLGQGLLPPWALSLCAIAGALLITLIL-LRFARRHRLSTSRLLLAGVALGIICSALMTW-AVY 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 177 FKISQDVSL---WTAGGVIGTTWSQlKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAG 253
Cdd:PRK03784  169 FSTSLDLRQlmyWMMGGFGGVDWRQ-SWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVG 247
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194007201 254 ASVALVGNMAFIGLMVPHMVRPIVGPDYRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAIVAIVGLPFFL 327
Cdd:PRK03784  248 VSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFI 321
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
18-335 1.38e-26

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 107.49  E-value: 1.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  18 ILSIIAFFLIFMVAMVLGAADTSIKDVWLALTSSAKGDKISIIREIRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPG 97
Cdd:PRK10440   13 LLLLAACVAAGLWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPD 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201  98 LLGL-SGGANAALALTLAFNPsiSYLYLTLACFIGAAVGAIMVFgiGMAKKGGLSPLRIVLAGAAVSAFLLAISEGVGIY 176
Cdd:PRK10440   93 VMGFnTGAWSGVLVAMVLFGQ--DLTAIALAAMAGGIVTSLLVW--LLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLK 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 177 FKISQDVS--LWTAGGVIGTTWSQLKVIIPVISISIFIAILLAKKLTVLSFSEEVAIGLGQKIIVIKTILFIIIILLAGA 254
Cdd:PRK10440  169 ASLETALTagLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAA 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194007201 255 SVALVGNMAFIGLMVPHMVRPIVGPDyRFVIPMSAIAGASFMLLADTIGRTINAPYETPVAAI-VAIVGLPFFLFIVRKG 333
Cdd:PRK10440  249 ATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVtVSLGGIYLIVLLIQES 327

                  ..
gi 1194007201 334 GK 335
Cdd:PRK10440  328 RK 329
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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