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Conserved domains on  [gi|1194456245|gb|OUC10333|]
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hypothetical protein X568_06175 [Helicobacter pylori SS1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF262 super family cl44501
Protein of unknown function DUF262;
5-33 1.16e-05

Protein of unknown function DUF262;


The actual alignment was detected with superfamily member pfam03235:

Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 37.24  E-value: 1.16e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 1194456245  5 IKEIFQAEG-YSIPNYQRDYAWKDKNFRDL 33
Cdd:pfam03235  1 VLPLLSDETiFDIPDYQRLYVWRKKQVSRL 30
 
Name Accession Description Interval E-value
DUF262 pfam03235
Protein of unknown function DUF262;
5-33 1.16e-05

Protein of unknown function DUF262;


Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 37.24  E-value: 1.16e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 1194456245  5 IKEIFQAEG-YSIPNYQRDYAWKDKNFRDL 33
Cdd:pfam03235  1 VLPLLSDETiFDIPDYQRLYVWRKKQVSRL 30
GmrSD COG1479
DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE ...
 2-33 1.66e-05

DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains [Defense mechanisms];


Pssm-ID: 441088 [Multi-domain]  Cd Length: 544  Bit Score: 38.49  E-value: 1.66e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1194456245   2 KTTIKEIFQAEG-YSIPNYQRDYAWKDKNFRDL 33
Cdd:COG1479     5 EKSLGELLSGNGrFVIPDYQRPYVWTEEQVEDL 37
 
Name Accession Description Interval E-value
DUF262 pfam03235
Protein of unknown function DUF262;
5-33 1.16e-05

Protein of unknown function DUF262;


Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 37.24  E-value: 1.16e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 1194456245  5 IKEIFQAEG-YSIPNYQRDYAWKDKNFRDL 33
Cdd:pfam03235  1 VLPLLSDETiFDIPDYQRLYVWRKKQVSRL 30
GmrSD COG1479
DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE ...
 2-33 1.66e-05

DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains [Defense mechanisms];


Pssm-ID: 441088 [Multi-domain]  Cd Length: 544  Bit Score: 38.49  E-value: 1.66e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1194456245   2 KTTIKEIFQAEG-YSIPNYQRDYAWKDKNFRDL 33
Cdd:COG1479     5 EKSLGELLSGNGrFVIPDYQRPYVWTEEQVEDL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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