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Conserved domains on  [gi|1195426307|gb|OUI67348|]
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hypothetical protein AZZ99_001615 [Serratia marcescens]

Protein Classification

serine hydrolase family protein( domain architecture ID 229407)

serine hydrolase family protein belonging to the alpha/beta-hydrolase fold superfamily contains a Ser/His/Asp catalytic triad; includes penicillin-binding proteins such as beta-lactamase precursor, and methicillin resistance protein

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Transpeptidase super family cl21491
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
 15-277 4.49e-103

Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.


The actual alignment was detected with superfamily member PRK11669:

Pssm-ID: 473882  Cd Length: 306  Bit Score: 302.37  E-value: 4.49e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  15 FGAALLFSLLFVLAPVHAAAP-------PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGS 87
Cdd:PRK11669    8 LSLLLLLAGVPFAPQAVAKTAaattasqPQEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDAKLPLDE 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  88 RLKVTAADRDLLKKTHSRLTIGSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTG 167
Cdd:PRK11669   88 KLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNTRYVEPTG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 168 LTPRNVATANDLLKMVNHAYRYQSIRRFSTDKQQIV--RPGRGQLVYRSSNGLINNPAWKIQLQKTGFTDEAGHCLVMRT 245
Cdd:PRK11669  168 LSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTAtfRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRT 247

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1195426307 246 TIKGQPVVMILLGAQSRYGHYRDAIRLKAWLE 277
Cdd:PRK11669  248 VINNRPVALVVLDAFGKYTHFADASRLRTWIE 279
 
Name Accession Description Interval E-value
pbpG PRK11669
D-alanyl-D-alanine endopeptidase; Provisional
 15-277 4.49e-103

D-alanyl-D-alanine endopeptidase; Provisional


Pssm-ID: 236952  Cd Length: 306  Bit Score: 302.37  E-value: 4.49e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  15 FGAALLFSLLFVLAPVHAAAP-------PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGS 87
Cdd:PRK11669    8 LSLLLLLAGVPFAPQAVAKTAaattasqPQEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDAKLPLDE 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  88 RLKVTAADRDLLKKTHSRLTIGSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTG 167
Cdd:PRK11669   88 KLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNTRYVEPTG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 168 LTPRNVATANDLLKMVNHAYRYQSIRRFSTDKQQIV--RPGRGQLVYRSSNGLINNPAWKIQLQKTGFTDEAGHCLVMRT 245
Cdd:PRK11669  168 LSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTAtfRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRT 247

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1195426307 246 TIKGQPVVMILLGAQSRYGHYRDAIRLKAWLE 277
Cdd:PRK11669  248 VINNRPVALVVLDAFGKYTHFADASRLRTWIE 279
DacC COG1686
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
19-275 4.06e-82

D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441292 [Multi-domain]  Cd Length: 324  Bit Score: 249.75  E-value: 4.06e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  19 LLFSLLFVLAPVHAAAPPLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGSRL--KVTAADR 96
Cdd:COG1686     6 LLALLLLLAAAAAAPAAPPDIAAKSAILIDADTGQVLYEKNADERLPPASLTKLMTAYVVLEALKAGKISLddKVTVSEE 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  97 DLLKK-THSRLTIGSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTGLT-PRNVA 174
Cdd:COG1686    86 AARTGgSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMNAKAKELGMTNTHFVNPTGLPdPGHYS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 175 TANDLLKMVNHAYR-YQSIRRFSTDKQQIVRPGRGQlVYRSSNGLINNPAWkIQLQKTGFTDEAGHCLVMRTTIKGQPVV 253
Cdd:COG1686   166 TARDLALLARAAIKdYPEFYEIFSTKEFTFPNGRGI-TLRNTNRLLGRYPG-VDGLKTGYTDAAGYCLVASAKRGGRRLI 243

                         250       260
                  ....*....|....*....|..
gi 1195426307 254 MILLGAQSRYGHYRDAIRLKAW 275
Cdd:COG1686   244 AVVLGAPSEKARFADAAKLLDY 265
Peptidase_S11 pfam00768
D-alanyl-D-alanine carboxypeptidase;
36-259 8.67e-57

D-alanyl-D-alanine carboxypeptidase;


Pssm-ID: 425859 [Multi-domain]  Cd Length: 234  Bit Score: 182.20  E-value: 8.67e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  36 PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGSRL--KVT----AADRDLLKKTHSRLTIG 109
Cdd:pfam00768   3 APEIAAKSAILVDYNTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAGKIKEddMVTisedAWATGNPGSSNIFLKPG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 110 SVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTGLT-PRNVATANDLLKMVNHAYR 188
Cdd:pfam00768  83 SQVSVKDLLRGALVSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDaHGQYSSARDMAILAKALIK 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1195426307 189 YqSIRRFSTDKQQIVR-PGRGQLVYRSSNGLINNPAWKIQLQKTGFTDEAGHCLVMRTTIKGQPVVMILLGA 259
Cdd:pfam00768 163 D-LPEELSITKEKSFTfRGINKINQRNRNGLLWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGA 233
 
Name Accession Description Interval E-value
pbpG PRK11669
D-alanyl-D-alanine endopeptidase; Provisional
 15-277 4.49e-103

D-alanyl-D-alanine endopeptidase; Provisional


Pssm-ID: 236952  Cd Length: 306  Bit Score: 302.37  E-value: 4.49e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  15 FGAALLFSLLFVLAPVHAAAP-------PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGS 87
Cdd:PRK11669    8 LSLLLLLAGVPFAPQAVAKTAaattasqPQEIASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDAKLPLDE 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  88 RLKVTAADRDLLKKTHSRLTIGSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTG 167
Cdd:PRK11669   88 KLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNTRYVEPTG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 168 LTPRNVATANDLLKMVNHAYRYQSIRRFSTDKQQIV--RPGRGQLVYRSSNGLINNPAWKIQLQKTGFTDEAGHCLVMRT 245
Cdd:PRK11669  168 LSIHNVSTARDLTKLLIASKQYPLIGQLSTTREKTAtfRKPNYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRT 247

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1195426307 246 TIKGQPVVMILLGAQSRYGHYRDAIRLKAWLE 277
Cdd:PRK11669  248 VINNRPVALVVLDAFGKYTHFADASRLRTWIE 279
DacC COG1686
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
19-275 4.06e-82

D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441292 [Multi-domain]  Cd Length: 324  Bit Score: 249.75  E-value: 4.06e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  19 LLFSLLFVLAPVHAAAPPLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGSRL--KVTAADR 96
Cdd:COG1686     6 LLALLLLLAAAAAAPAAPPDIAAKSAILIDADTGQVLYEKNADERLPPASLTKLMTAYVVLEALKAGKISLddKVTVSEE 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  97 DLLKK-THSRLTIGSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTGLT-PRNVA 174
Cdd:COG1686    86 AARTGgSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMNAKAKELGMTNTHFVNPTGLPdPGHYS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 175 TANDLLKMVNHAYR-YQSIRRFSTDKQQIVRPGRGQlVYRSSNGLINNPAWkIQLQKTGFTDEAGHCLVMRTTIKGQPVV 253
Cdd:COG1686   166 TARDLALLARAAIKdYPEFYEIFSTKEFTFPNGRGI-TLRNTNRLLGRYPG-VDGLKTGYTDAAGYCLVASAKRGGRRLI 243

                         250       260
                  ....*....|....*....|..
gi 1195426307 254 MILLGAQSRYGHYRDAIRLKAW 275
Cdd:COG1686   244 AVVLGAPSEKARFADAAKLLDY 265
Peptidase_S11 pfam00768
D-alanyl-D-alanine carboxypeptidase;
36-259 8.67e-57

D-alanyl-D-alanine carboxypeptidase;


Pssm-ID: 425859 [Multi-domain]  Cd Length: 234  Bit Score: 182.20  E-value: 8.67e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  36 PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRPMGSRL--KVT----AADRDLLKKTHSRLTIG 109
Cdd:pfam00768   3 APEIAAKSAILVDYNTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAGKIKEddMVTisedAWATGNPGSSNIFLKPG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 110 SVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTGLT-PRNVATANDLLKMVNHAYR 188
Cdd:pfam00768  83 SQVSVKDLLRGALVSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDaHGQYSSARDMAILAKALIK 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1195426307 189 YqSIRRFSTDKQQIVR-PGRGQLVYRSSNGLINNPAWKIQLQKTGFTDEAGHCLVMRTTIKGQPVVMILLGA 259
Cdd:pfam00768 163 D-LPEELSITKEKSFTfRGINKINQRNRNGLLWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGA 233
dacD PRK11397
serine-type D-Ala-D-Ala carboxypeptidase DacD;
10-275 8.40e-16

serine-type D-Ala-D-Ala carboxypeptidase DacD;


Pssm-ID: 183117 [Multi-domain]  Cd Length: 388  Bit Score: 76.40  E-value: 8.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  10 LPARRFGAALLFSLLfvLAPVHAAAP------PLVLNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMV---ALD 80
Cdd:PRK11397    1 LKRRLIIAASLFAFN--LSSAFAAENipfspqPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVvdrAID 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  81 SKRPmgSRLKVTAADRDLLKKTH-----SRLTI---GSVLSRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKA 152
Cdd:PRK11397   79 SHRI--TPDDIVTVGRDAWAKDNpvfvgSSLMFlkeGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 153 RAIGMKRARFYDPTGL-TPRNVATANDLLKM----------VNHAYRYQSIRRFSTDKQqivrpgrgqlvyrSSNGLINN 221
Cdd:PRK11397  157 EKLHLKDTHFETVHGLdAPGQHSSAYDLAVLsraiihgepeFYHMYSEKSLTWNGITQQ-------------NRNGLLWD 223

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1195426307 222 PAWKIQLQKTGFTDEAGHCLVMRTTIKGQPVVMILLGAQSRYGHYRDAIRLKAW 275
Cdd:PRK11397  224 KTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRW 277
PRK10001 PRK10001
serine-type D-Ala-D-Ala carboxypeptidase;
16-275 1.27e-14

serine-type D-Ala-D-Ala carboxypeptidase;


Pssm-ID: 182189 [Multi-domain]  Cd Length: 400  Bit Score: 73.10  E-value: 1.27e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  16 GAALLFSLLFVLAPVHAAAPPLV----LNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMVALDSKRpmGSRLKV 91
Cdd:PRK10001   10 GLAAGSAFLFLFAPTAFAAEQTVeapsVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALK--ADKIKL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  92 T---AADRDLLKKTHSRLTIGSVL--------SRRDMLHIALMSSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRA 160
Cdd:PRK10001   88 TdmvTVGKDAWATGNPALRGSSVMflkpgdqvSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNT 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 161 RFYDPTGL-TPRNVATAND-------LLKMVNHAYRYQSIRRFSTDKqqIVRPGRGQLVYRSSnglINnpawkIQLQKTG 232
Cdd:PRK10001  168 TFQTVHGLdAPGQFSTARDmallgkaLIHDVPEEYAIHKEKEFTFNK--IRQPNRNRLLWSSN---LN-----VDGMKTG 237

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1195426307 233 FTDEAGHCLVMRTTIKGQPVVMILLGAQSRYGHYRDAIRLKAW 275
Cdd:PRK10001  238 TTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTW 280
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is ...
 43-188 6.14e-07

Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 463854 [Multi-domain]  Cd Length: 215  Bit Score: 49.20  E-value: 6.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  43 SVLVVNQRTGKTLYQkQPNRVLPIASLTKLMTAMVALDS----KRPMGSRLKVTAADRDLLKKTHSRLTIGSVLSRRDML 118
Cdd:pfam13354   1 GIYVRDLDTGEELGI-NGDRSFPAASTIKVPILLAVLEQvdegKLSLDERLTVTAEDKVGGSGILQYLPDGSQLSLRDLL 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1195426307 119 HIALMSSENRAAAALsrsypgGRKAFVAKMNQKARAIGMKRARF----YDPTGL--TPRNVATANDLLKMVNHAYR 188
Cdd:pfam13354  80 TLMIAVSDNTATNLL------IDRLGLEAVNARLRALGLRDTRLrrklPDLRAAdkGGTNTTTARDMAKLLEALYR 149
PRK10793 PRK10793
D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
 39-275 9.21e-06

D-alanyl-D-alanine carboxypeptidase fraction A; Provisional


Pssm-ID: 182736 [Multi-domain]  Cd Length: 403  Bit Score: 46.39  E-value: 9.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  39 LNAKSVLVVNQRTGKTLYQKQPNRVLPIASLTKLMTAMV---ALDSKRPMGSRLKVTAAD------------RDLLKKTH 103
Cdd:PRK10793   44 IDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVigqAMKAGKFKETDLVTVGNDawatgnpvfkgsSLMFLKPG 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 104 SRLTIgSVLSRRDMLHialmsSENRAAAALSRSYPGGRKAFVAKMNQKARAIGMKRARFYDPTGL-TPRNVATAND---- 178
Cdd:PRK10793  124 MQVPV-SQLIRGINLQ-----SGNDACVAMADYVAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLdADGQYSSARDmali 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 179 ---LLKMVNHAYRYQSIRRFSTDkqQIVRPGRgqlvyrssNGLINNPAWKIQLQKTGFTDEAGHCLVMRTTIKGQPVVMI 255
Cdd:PRK10793  198 gqaLIRDVPNEYAIYKEKEFTFN--GIRQLNR--------NGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISA 267

                         250       260
                  ....*....|....*....|
gi 1195426307 256 LLGAQSRYGHYRDAIRLKAW 275
Cdd:PRK10793  268 VMGGRTFKGRETESKKLLTW 287
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
43-188 1.69e-03

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 441934 [Multi-domain]  Cd Length: 276  Bit Score: 39.11  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307  43 SVLVVNQRTGKTLYQkQPNRVLPIASLTKLMTAMVALD----SKRPMGSRLKVTAADR----DLLKKthsrLTIGSVLSR 114
Cdd:COG2367    36 GVYVLDLDTGETVGI-NADERFPAASTFKLPVLAAVLRqvdaGKLSLDERVTLTPEDLvggsGILQK----LPDGTGLTL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1195426307 115 RDMLHIALMSSENRAAAALSRSYpgGRKAFvakmNQKARAIGMKRARFYDPTG------LTPRNVATANDLLKMVNHAYR 188
Cdd:COG2367   111 RELAELMITVSDNTATNLLLRLL--GPDAV----NAFLRSLGLTDTRLDRKEPdlnelpGDGRNTTTPRDMARLLAALYR 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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