NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1218447088|gb|OXH65252|]
View 

hypothetical protein J000_05897 [Cryptococcus neoformans serotype A]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Bromodomain pfam00439
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ...
 220-304 1.46e-22

Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


:

Pssm-ID: 425683 [Multi-domain]  Cd Length: 84  Bit Score: 92.38  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 220 LQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSV 299
Cdd:pfam00439   1 CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVI---KKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSV 77


                  ....*
gi 1218447088 300 PHKSA 304
Cdd:pfam00439  78 IYKAA 82
COG5076 super family cl34891
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ...
 90-363 1.98e-08

Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];


The actual alignment was detected with superfamily member COG5076:

Pssm-ID: 227408 [Multi-domain]  Cd Length: 371  Bit Score: 57.12  E-value: 1.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  90 SSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKP---SASKKKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPETPTQV 166
Cdd:COG5076    23 NELLRLVDNDSSPFPNAPEEEGSKNLFQKQLKRMPKeyiTSIVDDREPGSMANVNDDLENVGGITYSPFEKNRPESLRFD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 167 K-VELENLSPASSSIPPAEVTNISTPSQNdgEETSGTGKRPIKWMRVKKPLKELLQKIMVEIRKKDDyaLFEEPVDLEAF 245
Cdd:COG5076   103 EiVFLAIESVTPESGLGSLLMAHLKTSVK--KRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSS--IFLGLPSKREY 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 246 PDYLDVIGgedNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSAGIILAHGLKHIE----RSRPL 321
Cdd:COG5076   179 PDYYEIIK---SPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEeipeEMLEL 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1218447088 322 VLTPPSTPRDSATPARATSVISTRELTAALEdRKARDDVPPN 363
Cdd:COG5076   256 SIKPGREEREERESVLITNSQAHVGAWPFLR-PVSDEEVPDY 296
Metaviral_G super family cl26626
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 26-147 5.38e-07

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


The actual alignment was detected with superfamily member pfam09595:

Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 50.72  E-value: 5.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  26 TPTPTHNKKGKHT-VPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPASSTAA----SPADPT 100
Cdd:pfam09595  54 NINKQHPEQEHHEnPPLNEAAKEAPSESEDAPDIDPNNQHPSQDRSEAPPLEPAAKTKPSEHEPANPPDAsnrlSPPDAS 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1218447088 101 T--PSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSS 147
Cdd:pfam09595 134 TaaIREARTFRKPSTGKRNNPSSAQSDQSPPRANHEAIGRANPFAMSST 182
 
Name Accession Description Interval E-value
Bromodomain pfam00439
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ...
 220-304 1.46e-22

Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 425683 [Multi-domain]  Cd Length: 84  Bit Score: 92.38  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 220 LQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSV 299
Cdd:pfam00439   1 CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVI---KKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSV 77


                  ....*
gi 1218447088 300 PHKSA 304
Cdd:pfam00439  78 IYKAA 82
Bromodomain cd04369
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ...
 213-315 3.66e-22

Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.


Pssm-ID: 99922 [Multi-domain]  Cd Length: 99  Bit Score: 91.66  E-value: 3.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 213 KKPLKELLQKIMveIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQK 292
Cdd:cd04369     2 KKKLRSLLDALK--KLKRDLSEPFLEPVDPKEAPDYYEVI---KNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76

                          90       100
                  ....*....|....*....|...
gi 1218447088 293 FNPPGSVPHKSAGIILAHGLKHI 315
Cdd:cd04369    77 YNGPGSPIYKDAKKLEKLFEKLL 99
BROMO smart00297
bromo domain;
211-304 6.23e-20

bromo domain;


Pssm-ID: 197636 [Multi-domain]  Cd Length: 107  Bit Score: 85.41  E-value: 6.23e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  211 RVKKPLKELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIGgedNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAA 290
Cdd:smart00297   3 KLQKKLQELLKAVLDKLDSHPLSWPFLKPVSRKEAPDYYDIIK---KPMDLKTIKKKLENGKYSSVEEFVADFNLMFSNA 79

                           90
                   ....*....|....
gi 1218447088  291 QKFNPPGSVPHKSA 304
Cdd:smart00297  80 RTYNGPDSEVYKDA 93
COG5076 COG5076
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ...
 90-363 1.98e-08

Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227408 [Multi-domain]  Cd Length: 371  Bit Score: 57.12  E-value: 1.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  90 SSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKP---SASKKKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPETPTQV 166
Cdd:COG5076    23 NELLRLVDNDSSPFPNAPEEEGSKNLFQKQLKRMPKeyiTSIVDDREPGSMANVNDDLENVGGITYSPFEKNRPESLRFD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 167 K-VELENLSPASSSIPPAEVTNISTPSQNdgEETSGTGKRPIKWMRVKKPLKELLQKIMVEIRKKDDyaLFEEPVDLEAF 245
Cdd:COG5076   103 EiVFLAIESVTPESGLGSLLMAHLKTSVK--KRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSS--IFLGLPSKREY 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 246 PDYLDVIGgedNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSAGIILAHGLKHIE----RSRPL 321
Cdd:COG5076   179 PDYYEIIK---SPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEeipeEMLEL 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1218447088 322 VLTPPSTPRDSATPARATSVISTRELTAALEdRKARDDVPPN 363
Cdd:COG5076   256 SIKPGREEREERESVLITNSQAHVGAWPFLR-PVSDEEVPDY 296
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 34-183 1.57e-07

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 54.93  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  34 KGKHTVPPTDVQDAHSSTPLPR--PKLKVNAARPSSFRISLPAVGPSTAdlPTVTTPASSTAASPADPTTPSGSASKTQT 111
Cdd:PLN03209  337 DGPKPVPTKPVTPEAPSPPIEEepPQPKAVVPRPLSPYTAYEDLKPPTS--PIPTPPSSSPASSKSVDAVAKPAEPDVVP 414

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218447088 112 SPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSSTSTTPSKPS-VAIPETPTQVKVELENLSPASSSIPPA 183
Cdd:PLN03209  415 SPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTgVSPSVSSTSSVPAVPDTAPATAATDAA 487
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 26-147 5.38e-07

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 50.72  E-value: 5.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  26 TPTPTHNKKGKHT-VPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPASSTAA----SPADPT 100
Cdd:pfam09595  54 NINKQHPEQEHHEnPPLNEAAKEAPSESEDAPDIDPNNQHPSQDRSEAPPLEPAAKTKPSEHEPANPPDAsnrlSPPDAS 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1218447088 101 T--PSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSS 147
Cdd:pfam09595 134 TaaIREARTFRKPSTGKRNNPSSAQSDQSPPRANHEAIGRANPFAMSST 182
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 38-167 3.44e-06

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 48.41  E-value: 3.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  38 TVPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPAS----STAASPADPTTPSGSASKTQTSP 113
Cdd:pfam09595  33 LILIGESNKEAALIITDIIDININKQHPEQEHHENPPLNEAAKEAPSESEDAPdidpNNQHPSQDRSEAPPLEPAAKTKP 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1218447088 114 gkkSSIKRSAKPSASKKKTGPRRPSAIPQRllsstSTTPSKPSVAIPETPTQVK 167
Cdd:pfam09595 113 ---SEHEPANPPDASNRLSPPDASTAAIRE-----ARTFRKPSTGKRNNPSSAQ 158
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
42-116 8.84e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.31  E-value: 8.84e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1218447088  42 TDVQDAHSSTPlPRPKLKVNAARPSSFRISLPAVGPStadlptVTTPASSTAASP---ADPTTPSGSASKTQTSPGKK 116
Cdd:PRK13042   23 TTTQAANATTP-SSTKVEAPQSTPPSTKVEAPQSKPN------ATTPPSTKVEAPqqtPNATTPSSTKVETPQSPTTK 93
 
Name Accession Description Interval E-value
Bromodomain pfam00439
Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin ...
 220-304 1.46e-22

Bromodomain; Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 425683 [Multi-domain]  Cd Length: 84  Bit Score: 92.38  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 220 LQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSV 299
Cdd:pfam00439   1 CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVI---KKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGSV 77


                  ....*
gi 1218447088 300 PHKSA 304
Cdd:pfam00439  78 IYKAA 82
Bromodomain cd04369
Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear ...
 213-315 3.66e-22

Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.


Pssm-ID: 99922 [Multi-domain]  Cd Length: 99  Bit Score: 91.66  E-value: 3.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 213 KKPLKELLQKIMveIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQK 292
Cdd:cd04369     2 KKKLRSLLDALK--KLKRDLSEPFLEPVDPKEAPDYYEVI---KNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76

                          90       100
                  ....*....|....*....|...
gi 1218447088 293 FNPPGSVPHKSAGIILAHGLKHI 315
Cdd:cd04369    77 YNGPGSPIYKDAKKLEKLFEKLL 99
BROMO smart00297
bromo domain;
211-304 6.23e-20

bromo domain;


Pssm-ID: 197636 [Multi-domain]  Cd Length: 107  Bit Score: 85.41  E-value: 6.23e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  211 RVKKPLKELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIGgedNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAA 290
Cdd:smart00297   3 KLQKKLQELLKAVLDKLDSHPLSWPFLKPVSRKEAPDYYDIIK---KPMDLKTIKKKLENGKYSSVEEFVADFNLMFSNA 79

                           90
                   ....*....|....
gi 1218447088  291 QKFNPPGSVPHKSA 304
Cdd:smart00297  80 RTYNGPDSEVYKDA 93
Bromo_brd7_like cd05513
Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown ...
 215-315 3.61e-17

Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99945  Cd Length: 98  Bit Score: 77.45  E-value: 3.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 215 PLKELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFN 294
Cdd:cd05513     1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSII---KHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYN 77

                          90       100
                  ....*....|....*....|.
gi 1218447088 295 PPGSVPHKSAGIILAHGLKHI 315
Cdd:cd05513    78 KPDTIYYKAAKKLLHSGMKIL 98
Bromo_brd1_like cd05512
Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein ...
 215-304 1.00e-16

Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99944  Cd Length: 98  Bit Score: 76.28  E-value: 1.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 215 PLKELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFN 294
Cdd:cd05512     1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHI---KQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYN 77

                          90
                  ....*....|
gi 1218447088 295 PPGSVPHKSA 304
Cdd:cd05512    78 AKDTIFYRAA 87
Bromo_gcn5_like cd05509
Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates ...
 215-304 8.10e-16

Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99941 [Multi-domain]  Cd Length: 101  Bit Score: 73.74  E-value: 8.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 215 PLKELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFN 294
Cdd:cd05509     1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVI---KKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYN 77

                          90
                  ....*....|
gi 1218447088 295 PPGSVPHKSA 304
Cdd:cd05509    78 GPDTEYYKCA 87
Bromo_Brdt_II_like cd05498
Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET ...
 221-304 2.64e-14

Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99930  Cd Length: 102  Bit Score: 69.23  E-value: 2.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 221 QKIMVEIRKKDDYAL---FEEPVDLEA--FPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNP 295
Cdd:cd05498     6 SGILKELFSKKHKAYawpFYKPVDPEAlgLHDYHDII---KHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNP 82


                  ....*....
gi 1218447088 296 PGSVPHKSA 304
Cdd:cd05498    83 PDHPVHAMA 91
Bromo_plant1 cd05506
Bromodomain, uncharacterized subfamily specific to plants. Might function as a global ...
 219-309 9.58e-11

Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99938  Cd Length: 99  Bit Score: 59.27  E-value: 9.58e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 219 LLQKIMveirkKDDYA-LFEEPVDLEAF--PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNP 295
Cdd:cd05506     8 LLRKLM-----KHKWGwVFNAPVDVVALglPDYFDII---KKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNP 79

                          90
                  ....*....|....
gi 1218447088 296 PGSVPHKSAGIILA 309
Cdd:cd05506    80 PGNDVHTMAKELLK 93
Bromo_BDF1_2_II cd05499
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast ...
 221-304 9.70e-11

Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99931  Cd Length: 102  Bit Score: 59.22  E-value: 9.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 221 QKIMVEIRKKDDYAL---FEEPVDLEAF--PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNP 295
Cdd:cd05499     6 EEVLKELMKPKHSAYnwpFLDPVDPVALniPNYFSII---KKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82


                  ....*....
gi 1218447088 296 PGSVPHKSA 304
Cdd:cd05499    83 EGTDVYMMG 91
Bromo_WDR9_I_like cd05529
Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome ...
 216-307 1.59e-10

Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99958  Cd Length: 128  Bit Score: 59.27  E-value: 1.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 216 LKELLQKIMVEIRKKDDYAlFEEPVDLEAF-PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFN 294
Cdd:cd05529    29 LISGLDKLLLSLQLEIAEY-FEYPVDLRAWyPDYWNRV---PVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFN 104

                          90
                  ....*....|...
gi 1218447088 295 PPGSVPHKSAGII 307
Cdd:cd05529   105 EPNSEIAKKAKRL 117
Bromo_AAA cd05528
Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long ...
 216-295 1.65e-10

Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver


Pssm-ID: 99957  Cd Length: 112  Bit Score: 58.91  E-value: 1.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 216 LKELLQKIMVEIRkkddYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNP 295
Cdd:cd05528     8 LRDVLKRLASDKR----FNAFTKPVDEEEVPDYYEII---KQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80
Bromo_TFIID cd05511
Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, ...
 219-299 5.92e-09

Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99943 [Multi-domain]  Cd Length: 112  Bit Score: 54.58  E-value: 5.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 219 LLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGS 298
Cdd:cd05511     4 ILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKII---KRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80


                  .
gi 1218447088 299 V 299
Cdd:cd05511    81 V 81
Bromo_BDF1_2_I cd05500
Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast ...
 220-299 6.36e-09

Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99932  Cd Length: 103  Bit Score: 54.24  E-value: 6.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 220 LQKIMVEIRKKDDYALFEEPVDLEAF--PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPG 297
Cdd:cd05500     9 LLSSIRSLKRLKDARPFLVPVDPVKLniPHYPTII---KKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPE 85


                  ..
gi 1218447088 298 SV 299
Cdd:cd05500    86 HP 87
Bromo_WDR9_II cd05496
Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome ...
 213-295 1.06e-08

Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99928  Cd Length: 119  Bit Score: 54.00  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 213 KKPLKELLQKIMVeirkKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQK 292
Cdd:cd05496     7 KKQCKELVNLMWD----CEDSEPFRQPVDLLKYPDYRDII---DTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKS 79


                  ...
gi 1218447088 293 FNP 295
Cdd:cd05496    80 YTP 82
COG5076 COG5076
Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin ...
 90-363 1.98e-08

Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227408 [Multi-domain]  Cd Length: 371  Bit Score: 57.12  E-value: 1.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  90 SSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKP---SASKKKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPETPTQV 166
Cdd:COG5076    23 NELLRLVDNDSSPFPNAPEEEGSKNLFQKQLKRMPKeyiTSIVDDREPGSMANVNDDLENVGGITYSPFEKNRPESLRFD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 167 K-VELENLSPASSSIPPAEVTNISTPSQNdgEETSGTGKRPIKWMRVKKPLKELLQKIMVEIRKKDDyaLFEEPVDLEAF 245
Cdd:COG5076   103 EiVFLAIESVTPESGLGSLLMAHLKTSVK--KRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSS--IFLGLPSKREY 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 246 PDYLDVIGgedNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSAGIILAHGLKHIE----RSRPL 321
Cdd:COG5076   179 PDYYEIIK---SPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEeipeEMLEL 255

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1218447088 322 VLTPPSTPRDSATPARATSVISTRELTAALEdRKARDDVPPN 363
Cdd:COG5076   256 SIKPGREEREERESVLITNSQAHVGAWPFLR-PVSDEEVPDY 296
Bromo_BAZ2A_B_like cd05503
Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B ...
 217-308 4.37e-08

Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99935  Cd Length: 97  Bit Score: 51.61  E-value: 4.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 217 KELLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPP 296
Cdd:cd05503     2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKII---KKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNED 78

                          90
                  ....*....|..
gi 1218447088 297 GSvPHKSAGIIL 308
Cdd:cd05503    79 DS-EVGRAGHNM 89
Bromo_polybromo_V cd05515
Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which ...
 245-304 8.86e-08

Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.


Pssm-ID: 99946  Cd Length: 105  Bit Score: 50.77  E-value: 8.86e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 245 FPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSA 304
Cdd:cd05515    36 YPDYYDVI---KKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDA 92
Bromo_WSTF_like cd05505
Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The ...
 218-298 9.04e-08

Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99937  Cd Length: 97  Bit Score: 50.61  E-value: 9.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 218 ELLQKIMveirKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPG 297
Cdd:cd05505     7 EILSKIL----KYRFSWPFREPVTADEAEDYKKVI---TNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79


                  .
gi 1218447088 298 S 298
Cdd:cd05505    80 S 80
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 34-183 1.57e-07

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 54.93  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  34 KGKHTVPPTDVQDAHSSTPLPR--PKLKVNAARPSSFRISLPAVGPSTAdlPTVTTPASSTAASPADPTTPSGSASKTQT 111
Cdd:PLN03209  337 DGPKPVPTKPVTPEAPSPPIEEepPQPKAVVPRPLSPYTAYEDLKPPTS--PIPTPPSSSPASSKSVDAVAKPAEPDVVP 414

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218447088 112 SPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSSTSTTPSKPS-VAIPETPTQVKVELENLSPASSSIPPA 183
Cdd:PLN03209  415 SPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTgVSPSVSSTSSVPAVPDTAPATAATDAA 487
Bromo_polybromo_III cd05520
Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which ...
 243-304 5.14e-07

Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.


Pssm-ID: 99951  Cd Length: 103  Bit Score: 48.49  E-value: 5.14e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1218447088 243 EAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSA 304
Cdd:cd05520    34 RKYPDYYQEI---KNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDA 92
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 26-147 5.38e-07

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 50.72  E-value: 5.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  26 TPTPTHNKKGKHT-VPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPASSTAA----SPADPT 100
Cdd:pfam09595  54 NINKQHPEQEHHEnPPLNEAAKEAPSESEDAPDIDPNNQHPSQDRSEAPPLEPAAKTKPSEHEPANPPDAsnrlSPPDAS 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1218447088 101 T--PSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSS 147
Cdd:pfam09595 134 TaaIREARTFRKPSTGKRNNPSSAQSDQSPPRANHEAIGRANPFAMSST 182
Bromo_Acf1_like cd05504
Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was ...
 219-298 8.78e-07

Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99936  Cd Length: 115  Bit Score: 48.55  E-value: 8.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 219 LLQKIMVEIRKKDDYALFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGS 298
Cdd:cd05504    16 ALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDII---KKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHT 92
Bromo_polybromo_I cd05524
Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which ...
 246-304 1.71e-06

Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.


Pssm-ID: 99954 [Multi-domain]  Cd Length: 113  Bit Score: 47.33  E-value: 1.71e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218447088 246 PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPGSVPHKSA 304
Cdd:cd05524    39 PEYYEVV---SNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDA 94
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-183 2.36e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 2.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    3 NSPPQGLPPIKLK---LSLSNIHQPSTPTPTHNKKGKHTVPPTDVQDAHSSTPLPRPKLKVNAARPSsfrislPAVGPST 79
Cdd:PHA03247  2677 SSPPQRPRRRAARptvGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPA------VPAGPAT 2750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   80 --ADLPTVTTPASSTAASPADPTTPSGSASKTQTSPGKKS-SIKRSAKPSaskkktgPRRPSAIPQRLLSSTSTTPSKPS 156
Cdd:PHA03247  2751 pgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASlSESRESLPS-------PWDPADPPAAVLAPAAALPPAAS 2823

                          170       180
                   ....*....|....*....|....*..
gi 1218447088  157 VAIPETPTQVKVelenlsPASSSIPPA 183
Cdd:PHA03247  2824 PAGPLPPPTSAQ------PTAPPPPPG 2844
Metaviral_G pfam09595
Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. ...
 38-167 3.44e-06

Metaviral_G glycoprotein; This is a viral attachment glycoprotein from region G of metaviruses. It is high in serine and threonine suggesting it is highly glycosylated.


Pssm-ID: 462833 [Multi-domain]  Cd Length: 183  Bit Score: 48.41  E-value: 3.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  38 TVPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPAS----STAASPADPTTPSGSASKTQTSP 113
Cdd:pfam09595  33 LILIGESNKEAALIITDIIDININKQHPEQEHHENPPLNEAAKEAPSESEDAPdidpNNQHPSQDRSEAPPLEPAAKTKP 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1218447088 114 gkkSSIKRSAKPSASKKKTGPRRPSAIPQRllsstSTTPSKPSVAIPETPTQVK 167
Cdd:pfam09595 113 ---SEHEPANPPDASNRLSPPDASTAAIRE-----ARTFRKPSTGKRNNPSSAQ 158
Bromo_SPT7_like cd05510
Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the ...
 215-294 3.43e-05

Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99942 [Multi-domain]  Cd Length: 112  Bit Score: 43.58  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 215 PLKELLQKIMVEIRKKDDYAL-FEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKF 293
Cdd:cd05510     7 EFYESLDKVLNELKTYTEHSTpFLTKVSKREAPDYYDII---KKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83


                  .
gi 1218447088 294 N 294
Cdd:cd05510    84 N 84
DUF2967 pfam11179
Protein of unknown function (DUF2967); This family of proteins with unknown function appears ...
 23-202 5.39e-05

Protein of unknown function (DUF2967); This family of proteins with unknown function appears to be restricted to Drosophila.


Pssm-ID: 402654 [Multi-domain]  Cd Length: 954  Bit Score: 46.95  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  23 QPSTPTPTHNKKGKHTVPPTDVQDAHSST-----------------PLPRPKLKVNAARPSSFRISLPAVGPSTADLPTV 85
Cdd:pfam11179  13 DTSSAPPHAALAGPITAAPTGAAAAAATStaaasaasstitapgagPGGTPTSRSRGAQAMTASLAHAAQGNANANKSTR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  86 TTPASST---------------------------------AASPADP--TTPSGSASKTQT---SPGKKSSIKRSAKPSA 127
Cdd:pfam11179  93 NNSNSSNnngkpkplaacymstrsaammalalgqqsgekkDKKPAAGkaASPAQSQSQSQSqnaSPHTNNRAVSMTRPAA 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 128 SKKKTGPRRPSAIPQRLLSSTST---TPSKPSVAIPETPTQVK--VELENLSPASSSippaevTNiSTPSQNDGEETSGT 202
Cdd:pfam11179 173 TRRLPNAAAMSNVNAANSTCTATatsLPSNRARSKPSTPTATRaaAQLNGMGIFSGG------SN-SSGSDNDGFSASGS 245
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 24-163 7.67e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 46.07  E-value: 7.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  24 PSTPTPTHNKKGKHTVPPTD-VQDAHSSTPLPRPKLKVNA------------ARPSSFRISLPAVGPSTADLPT----VT 86
Cdd:PLN03209  383 PTSPIPTPPSSSPASSKSVDaVAKPAEPDVVPSPGSASNVpevepaqveakkTRPLSPYARYEDLKPPTSPSPTaptgVS 462

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1218447088  87 TPASSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSAS--KKKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPETP 163
Cdd:PLN03209  463 PSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDdlKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTAL 541
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-191 7.68e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 7.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    4 SPPQGLPPIKLKlSLSNIHQPSTPT--PTHNKKGKHTVPPTDVQDAHSSTPLPRPklkvnaaRPSSFRislpavgpstAD 81
Cdd:PHA03247  2657 APGRVSRPRRAR-RLGRAAQASSPPqrPRRRAARPTVGSLTSLADPPPPPPTPEP-------APHALV----------SA 2718

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   82 LPTVTTPASSTAASPADPTTPSGSASKTQT-SPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLL---SSTSTTPSKPSV 157
Cdd:PHA03247  2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPaTPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLtrpAVASLSESRESL 2798

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1218447088  158 AIPETPTQVKV--------ELENLSPASSSIPPAEVTNISTP 191
Cdd:PHA03247  2799 PSPWDPADPPAavlapaaaLPPAASPAGPLPPPTSAQPTAPP 2840
Endomucin pfam07010
Endomucin; This family consists of several mammalian endomucin proteins. Endomucin is an early ...
 73-202 1.05e-04

Endomucin; This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.


Pssm-ID: 429246 [Multi-domain]  Cd Length: 260  Bit Score: 44.86  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  73 PAVGPSTADlPTVTTPASSTAASPADPTTPSGSASK---------TQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQR 143
Cdd:pfam07010  33 LSTTPSTTA-ETASTPKTTNLNTPTGGTSPVGTTSSelsktslvsTTISLTTTKKGVGTTTTDVSKNESSTTKPTVTSTP 111

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1218447088 144 LLSSTSTTPS-------KPSVAIPETPTQVKVELENLSPASSSIPPAEVTNISTPSQNDGEETSGT 202
Cdd:pfam07010 112 LSNAVSTLQSsqhktenQSSIKTTETSGVSTLPPDASPSETATLSSISVTTPENISQSQGTEDAKN 177
PHA03247 PHA03247
large tegument protein UL36; Provisional
 5-191 1.79e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    5 PPQGLPPIKLKLSLSnihqPSTPTPTHNKKGKHTVPPTDVQDAHSSTP-----------LPRPKLKVNAARPSsfrislP 73
Cdd:PHA03247  2702 PPPPPTPEPAPHALV----SATPLPPGPAAARQASPALPAAPAPPAVPagpatpggparPARPPTTAGPPAPA------P 2771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   74 AVGPSTADLPTVTTPASSTAA-------SPADPT------TPSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAI 140
Cdd:PHA03247  2772 PAAPAAGPPRRLTRPAVASLSesreslpSPWDPAdppaavLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  141 PQRLLSS----TSTTPSKPSVAIPETPTQVKVE-----LENLSPASSSIPPAEVTNISTP 191
Cdd:PHA03247  2852 LGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRrlarpAVSRSTESFALPPDQPERPPQP 2911
Bromo_tif1_like cd05502
Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of ...
 219-298 1.89e-04

Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99934 [Multi-domain]  Cd Length: 109  Bit Score: 41.51  E-value: 1.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 219 LLQKIMVEIRKKDDYALFEEPVDLEAfPDYLDVIGgedNMMDMSTMQAKVDRNE---YRNIDQIEADLRTLASAAQKFNP 295
Cdd:cd05502     8 KCERLLLELYCHELSLPFHEPVSPSV-PNYYKIIK---TPMDLSLIRKKLQPKSpqhYSSPEEFVADVRLMFKNCYKFNE 83


                  ...
gi 1218447088 296 PGS 298
Cdd:cd05502    84 EDS 86
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 19-206 2.06e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  19 SNIHQPSTPTPTHNKKGKHTVPPTDVQDAHSS-TPLPRPKLKVNAARPSSFRISLPAVGP----STADLPTVTTPASSTA 93
Cdd:pfam05109 456 TNLTAPASTGPTVSTADVTSPTPAGTTSGASPvTPSPSPRDNGTESKAPDMTSPTSAVTTptpnATSPTPAVTTPTPNAT 535

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  94 ASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAipqrllSSTSTTPSKPSVAIPETPTQVKVELENL 173
Cdd:pfam05109 536 SPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTS------AVTTPTPNATSPTVGETSPQANTTNHTL 609

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1218447088 174 SPASS----SIPPAEVTNISTPSQND--GEETSGTGKRP 206
Cdd:pfam05109 610 GGTSStpvvTSPPKNATSAVTTGQHNitSSSTSSMSLRP 648
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
82-171 2.14e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 44.24  E-value: 2.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  82 LPTVTTPASSTAASPADPTTPSGSASKTQTSPgkKSSIKRSAKPSASKKKTGPRRPSAIPQRllSSTSTTPSKPSVAIPE 161
Cdd:PRK13042   13 LGLLTTGVITTTTQAANATTPSSTKVEAPQST--PPSTKVEAPQSKPNATTPPSTKVEAPQQ--TPNATTPSSTKVETPQ 88

                          90
                  ....*....|
gi 1218447088 162 TPTQVKVELE 171
Cdd:PRK13042   89 SPTTKQVPTE 98
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 24-202 2.51e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 44.57  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  24 PSTPTPTHNKKGKHTVPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGP-STADLPTVTTPASSTAASPADPTTP 102
Cdd:pfam17823 222 PAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPhARRLSPAKHMPSDTMARNPAAPMGA 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088 103 SGSASKTQTSPGKK-SSIKRSAKPSASKKKTGPRRPSAIPQRLLSSTSTT------PSKPSVAIPetPTQVKVELENLSP 175
Cdd:pfam17823 302 QAQGPIIQVSTDQPvHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTkaqakePSASPVPVL--HTSMIPEVEATSP 379

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1218447088 176 AS--SSIPPAEVTN----ISTPSQNDGEETSGT 202
Cdd:pfam17823 380 TTqpSPLLPTQGAAgpgiLLAPEQVATEATAGT 412
Bromo_Brdt_I_like cd05497
Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET ...
 236-297 2.61e-04

Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99929  Cd Length: 107  Bit Score: 41.25  E-value: 2.61e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1218447088 236 FEEPVDLEAF--PDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEADLRTLASAAQKFNPPG 297
Cdd:cd05497    26 FQQPVDAVKLnlPDYHKII---KTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPG 86
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 58-184 3.30e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  58 LKVNAARPSSFRISLPAVGPSTADLPTVTTPASSTAASPADPT----TPSGSASKTQTSPGKKSSIKRSAKPSASKKKTG 133
Cdd:PRK14951  359 LRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPapaaAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1218447088 134 PRRPSAIPQRLLSSTSTTP---SKPSVAIPETPTQVKVELENLSPASSSIPPAE 184
Cdd:PRK14951  439 AAAPAAVALAPAPPAQAAPetvAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-191 7.34e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 7.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    4 SPPQGLPPIKLKLSlsniHQPSTPTPTHNKKGKHTVPPTDVQDAHSSTPLP-------RPKLKVNAARPSS------FRI 70
Cdd:PHA03247  2612 APPSPLPPDTHAPD----PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprRARRLGRAAQASSppqrprRRA 2687

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   71 SLPAVGPSTADL---PTVTTPASS-TAASPADPTTPsGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLS 146
Cdd:PHA03247  2688 ARPTVGSLTSLAdppPPPPTPEPApHALVSATPLPP-GPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1218447088  147 STSTTPSKPSVAIPETPTQVKVelENLSPASSSIP----PAEVTNISTP 191
Cdd:PHA03247  2767 PAPAPPAAPAAGPPRRLTRPAV--ASLSESRESLPspwdPADPPAAVLA 2813
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
42-116 8.84e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.31  E-value: 8.84e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1218447088  42 TDVQDAHSSTPlPRPKLKVNAARPSSFRISLPAVGPStadlptVTTPASSTAASP---ADPTTPSGSASKTQTSPGKK 116
Cdd:PRK13042   23 TTTQAANATTP-SSTKVEAPQSTPPSTKVEAPQSKPN------ATTPPSTKVEAPqqtPNATTPSSTKVETPQSPTTK 93
Bromo_RACK7 cd05508
Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) ...
 235-282 1.11e-03

Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.


Pssm-ID: 99940  Cd Length: 99  Bit Score: 38.90  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1218447088 235 LFEEPVDLEAFPDYLDVIggeDNMMDMSTMQAKVDRNEYRNIDQIEAD 282
Cdd:cd05508    22 PFLKPVDLEQFPDYAQYV---FKPMDLSTLEKNVRKKAYGSTDAFLAD 66
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 87-192 1.75e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.00  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  87 TPASSTAASPADPTTPSGSASKTQTSpGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSStSTTPSKPSVAIPETPTQV 166
Cdd:PLN02217  558 IPGLFAGNPGSTNSTPTGSAASSNTT-FSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSP-STSPPASHLGSPSTTPSS 635

                          90       100
                  ....*....|....*....|....*.
gi 1218447088 167 KVELENLSPASSSIPPAEVTNISTPS 192
Cdd:PLN02217  636 PESSIKVASTETASPESSIKVASTES 661
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 62-206 1.96e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   62 AARPSSFRISLPAVGPSTADLPTVTTPASSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSaiP 141
Cdd:PHA03307    60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSE--M 137

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218447088  142 QRLLSSTSTTPSKPSVAIPETPTQVKVELENLSPAS--SSIPPAEVTNISTPSQNDGEETSGTGKRP 206
Cdd:PHA03307   138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAlpLSSPEETARAPSSPPAEPPPSTPPAAASP 204
PHA03247 PHA03247
large tegument protein UL36; Provisional
 5-206 2.30e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    5 PPQGLPPIKLKLSLSNIHQPSTPTPthnkkgKHTVPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAvGPSTADLPT 84
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAP------RPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP-SPLPPDTHA 2623

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   85 VTTPASSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQR------------LLSSTSTTP 152
Cdd:PHA03247  2624 PDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRprrraarptvgsLTSLADPPP 2703

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1218447088  153 SKPSVAIPETPTQVKVELENLSPASSSIPPAEVTNISTPSQNDGEETSGTGKRP 206
Cdd:PHA03247  2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARP 2757
PRK10905 PRK10905
cell division protein DamX; Validated
 83-201 3.15e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 40.69  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  83 PTVTTPASSTAASPADPTTPSGSASKTqTSPGKKSSIKRSAKPSASKKKTgPRRPSAIPQRllsSTSTTPSKPSVAIPET 162
Cdd:PRK10905  127 PATVAPVRNGNASRQTAKTQTAERPAT-TRPARKQAVIEPKKPQATAKTE-PKPVAQTPKR---TEPAAPVASTKAPAAT 201

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1218447088 163 PTQVKVELENLSPASSSIPPAevtniSTPSQNDGEETSG 201
Cdd:PRK10905  202 STPAPKETATTAPVQTASPAQ-----TTATPAAGGKTAG 235
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
52-192 3.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 3.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  52 PLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPASST--AASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSASK 129
Cdd:PRK07003  381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATraEAPPAAPAPPATADRGDDAADGDAPVPAKANARASAD 460

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218447088 130 KKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPETPTQVKVELENLSPASSSIPPAEVTNISTPS 192
Cdd:PRK07003  461 SRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-206 5.30e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 5.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   27 PTPTHNKKGKHTVPPTDVQDAHSSTPLPRPKLKVNAARPSSFRISLPAVGPSTADLPTVTTPASSTAASPAD-------- 98
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEeddedgam 334

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   99 -------------PTTPSGSASKTQTSPGKKSSI------KRSAKPSASKKKTGPRRPSAIPQRLLSSTSTTPSKPSVAI 159
Cdd:PHA03247   335 evvsplprprqhyPLGFPKRRRPTWTPPSSLEDLsagrhhPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPAS 414

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1218447088  160 PETPTQVKVelenlsPASSSIPPAEVTNISTPSQNDGEETSGTGKRP 206
Cdd:PHA03247   415 VPTPAPTPV------PASAPPPPATPLPSAEPGSDDGPAPPPERQPP 455
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
5-175 5.60e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.03  E-value: 5.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   5 PPQGLPPIKLKLSLSnihqpSTPTPTHNKKGKHTVPPTDVqdahsstpLPRPKLKvnaarpssfrislpavGPSTAD--L 82
Cdd:pfam05539 200 ATQGHQTATANQRLS-----STEPVGTQGTTTSSNPEPQT--------EPPPSQR----------------GPSGSPqhP 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088  83 PTVTTPASSTAASpADPTTPSgsaSKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSSTSTTPSKPSVAIPET 162
Cdd:pfam05539 251 PSTTSQDQSTTGD-GQEHTQR---RKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQAN 326

                         170
                  ....*....|....
gi 1218447088 163 PT-QVKVELENLSP 175
Cdd:pfam05539 327 PTtQNLVDCKELDP 340
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2-206 5.84e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 5.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088    2 VNSPPQGLPPIKLKLSLSNIHQPSTPTPTHNKKGKHTVPPTDVQDAHSS-----------TPLPRPKLkvnAARPSSFRI 70
Cdd:PHA03307   195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSEssgcgwgpeneCPLPRPAP---ITLPTRIWE 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218447088   71 SLPAVGPSTADLPTVTTPASSTAASPADPTTPSGSASKTQTSPGKKSSIKRSAKPSASKKKTGPRRPSAIPQRLLSSTST 150
Cdd:PHA03307   272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSP 351

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1218447088  151 TPSKPSVAIPETPTQvKVELENLSPASSSIPPAEVTNISTPSQNDGEETS--GTGKRP 206
Cdd:PHA03307   352 SPSRPPPPADPSSPR-KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRrdATGRFP 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH