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Conserved domains on  [gi|1229267639|gb|OYD01060|]
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DoxX family protein (plasmid) [Rhizobium sp. N4311]

Protein Classification

DoxX family protein( domain architecture ID 10006227)

DoxX family protein, an inner membrane protein, similar to Bacillus subtilis putative oxidoreductases MhqP and CatD, and Escherichia coli inner membrane proteins YphA and YqjF

Gene Ontology:  GO:0005886
PubMed:  15306018|26067605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
9-116 1.87e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


:

Pssm-ID: 441860  Cd Length: 134  Bit Score: 48.67  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229267639   9 LRILCGTWLIPHLLGKGLHYEKAGGTFEAAGFRPGRLFVGLTMIAEACAAVGLIFSIYPRVAALFGALVLLGAGYAVvki 88
Cdd:COG2259    14 LRLLLGLLFLAHGLQKLFGFDGTAGFFASLGLPLPALLAYLAGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVV--- 90

                          90       100
                  ....*....|....*....|....*...
gi 1229267639  89 NGKNWRWQKMGPEYPIFWALVCLLTALV 116
Cdd:COG2259    91 HLPNGFWAMGGGEKNLLLAGGLLALALL 118
 
Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
9-116 1.87e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 48.67  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229267639   9 LRILCGTWLIPHLLGKGLHYEKAGGTFEAAGFRPGRLFVGLTMIAEACAAVGLIFSIYPRVAALFGALVLLGAGYAVvki 88
Cdd:COG2259    14 LRLLLGLLFLAHGLQKLFGFDGTAGFFASLGLPLPALLAYLAGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVV--- 90

                          90       100
                  ....*....|....*....|....*...
gi 1229267639  89 NGKNWRWQKMGPEYPIFWALVCLLTALV 116
Cdd:COG2259    91 HLPNGFWAMGGGEKNLLLAGGLLALALL 118
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 9-85 1.34e-03

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 35.23  E-value: 1.34e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1229267639   9 LRILCGTWLIPHLLGK-GLHYEKAGGTFEAAGFRPGRLFVGLTMIAEACAAVGLIFSIYPRVAALFGALVLLGAGYAV 85
Cdd:pfam07681   5 LRLALGVLFIAHGLQKlFGGFAGTAGYFASLGLPPPALLAYLAILAELVGGLLLLLGLLTRLAALLLAVFMLVAIFLV 82
PRK11061 PRK11061
phosphoenolpyruvate--protein phosphotransferase;
49-92 5.13e-03

phosphoenolpyruvate--protein phosphotransferase;


Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 34.97  E-value: 5.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1229267639  49 LTMIAEACAAVGLIFSIYPRVAAL-FGALVLLGAGYAVVKINGKN 92
Cdd:PRK11061  651 LKMIADEAEQHGLPVSLCGEMAGDpMGALLLIGLGYRHLSMNGRS 695
 
Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
9-116 1.87e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 48.67  E-value: 1.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229267639   9 LRILCGTWLIPHLLGKGLHYEKAGGTFEAAGFRPGRLFVGLTMIAEACAAVGLIFSIYPRVAALFGALVLLGAGYAVvki 88
Cdd:COG2259    14 LRLLLGLLFLAHGLQKLFGFDGTAGFFASLGLPLPALLAYLAGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVV--- 90

                          90       100
                  ....*....|....*....|....*...
gi 1229267639  89 NGKNWRWQKMGPEYPIFWALVCLLTALV 116
Cdd:COG2259    91 HLPNGFWAMGGGEKNLLLAGGLLALALL 118
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 9-85 1.34e-03

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 35.23  E-value: 1.34e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1229267639   9 LRILCGTWLIPHLLGK-GLHYEKAGGTFEAAGFRPGRLFVGLTMIAEACAAVGLIFSIYPRVAALFGALVLLGAGYAV 85
Cdd:pfam07681   5 LRLALGVLFIAHGLQKlFGGFAGTAGYFASLGLPPPALLAYLAILAELVGGLLLLLGLLTRLAALLLAVFMLVAIFLV 82
PRK11061 PRK11061
phosphoenolpyruvate--protein phosphotransferase;
49-92 5.13e-03

phosphoenolpyruvate--protein phosphotransferase;


Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 34.97  E-value: 5.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1229267639  49 LTMIAEACAAVGLIFSIYPRVAAL-FGALVLLGAGYAVVKINGKN 92
Cdd:PRK11061  651 LKMIADEAEQHGLPVSLCGEMAGDpMGALLLIGLGYRHLSMNGRS 695
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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