|
Name |
Accession |
Description |
Interval |
E-value |
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-241 |
3.10e-84 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 251.50 E-value: 3.10e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID----GRKA---RLAH 73
Cdd:COG1120 1 MLEAENLSVGYGGR-PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDlaslSRRElarRIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIQFSYSVLDFVSFGR-PLcGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGRyPH-LGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVVLQEERLGEYFNVP 231
Cdd:COG1120 159 LLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDgRIVAQGPPEEVLTPELLEEVYGVE 238
|
250
....*....|
gi 1235141840 232 VKRCYFEHRG 241
Cdd:COG1120 239 ARVIEDPVTG 248
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-232 |
7.24e-74 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 224.97 E-value: 7.24e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKAR--LAHVPQAR 78
Cdd:COG1121 6 AIELENLTVSY-GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARrrIGYVPQRA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSY--SVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:COG1121 85 EVDWDFpiTVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLD 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKEYFFGNKEVVLQEERLGEYFNVPV 232
Cdd:COG1121 165 EPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPPEEVLTPENLSRAYGGPV 239
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-213 |
4.19e-63 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 196.60 E-value: 4.19e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK--ARLAHVPQARHI 80
Cdd:cd03235 1 EVEDLTVSYGGH-PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKerKRIGYVPQRRSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSY--SVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:cd03235 80 DRDFpiSVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 159 ESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKEYFFG 213
Cdd:cd03235 160 FAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-209 |
1.12e-62 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 194.19 E-value: 1.12e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrKARLAHVPQARHIqf 82
Cdd:cd03214 1 EVENLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASLSPKELARKI-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 83 sysvldfvsfgrplcgGILPspgskdleqsaQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNL 162
Cdd:cd03214 76 ----------------AYVP-----------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 163 DFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:cd03214 129 DIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-224 |
3.94e-52 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 169.05 E-value: 3.94e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVpqARHIQ 81
Cdd:COG1122 1 IELENLSFSYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLREL--RRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 ----------FSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:COG1122 79 lvfqnpddqlFAPTVEEDVAFG-PENLGL---PREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIILNTHFINHANSIADKCLLMKRKE-YFFGNKEVVLQEERL 224
Cdd:COG1122 155 VLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRiVADGTPREVFSDYEL 227
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-232 |
5.75e-48 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 159.09 E-value: 5.75e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKA-------RLAH 73
Cdd:COG4604 1 MIEIKNVSKRY-GGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTpsrelakRLAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIQFSYSVLDFVSFGR-PLCGGILpspGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:COG4604 80 LRQENHINSRLTVRELVAFGRfPYSKGRL---TAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDY 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVVLQEERLGEYFNVP 231
Cdd:COG4604 157 VLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDgRVVAQGTPEEIITPEVLSDIYDTD 236
|
.
gi 1235141840 232 V 232
Cdd:COG4604 237 I 237
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-207 |
2.13e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 156.09 E-value: 2.13e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGR-SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVpqARHI- 80
Cdd:cd03225 1 ELKNLSFSYPDGaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKEL--RRKVg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 --------QFSY-SVLDFVSFGRPLCGGilpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:cd03225 79 lvfqnpddQFFGpTVEEEVAFGLENLGL----PEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLED 209
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-206 |
3.74e-46 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 153.41 E-value: 3.74e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKARLa 72
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQalkGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDisklseKELAAF- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 hvpQARHI----QFSY-----SVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIA 143
Cdd:cd03255 80 ---RRRHIgfvfQSFNllpdlTALENVELPLLLAG----VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHAnSIADKCLLMK 206
Cdd:cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELR 214
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-233 |
1.60e-45 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 152.55 E-value: 1.60e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSG-TCHI-----GGIDGR--KARLA 72
Cdd:COG1119 3 LLELRNVTVRRGGK-TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLfgerrGGEDVWelRKRIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQF--SYSVLDFV------SFGRPlcggilPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIAR 144
Cdd:COG1119 82 LVSPALQLRFprDETVLDVVlsgffdSIGLY------REPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIAR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH-------FINHAnsiadkcLLMKR-KEYFFGNKE 216
Cdd:COG1119 156 ALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHhveeippGITHV-------LLLKDgRVVAAGPKE 228
|
250
....*....|....*..
gi 1235141840 217 VVLQEERLGEYFNVPVK 233
Cdd:COG1119 229 EVLTSENLSEAFGLPVE 245
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-207 |
1.66e-45 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 152.14 E-value: 1.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR------KARLAHVP 75
Cdd:COG1131 1 IEVRGLTKRYGDK-TALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVArdpaevRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQFSYSVLDFVSFgrplCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVL 155
Cdd:COG1131 80 QEPALYPDLTVRENLRF----FARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLIL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 156 DEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG1131 156 DEPTSGLDPEARRELWELLREL-AAEGKTVLLSTHYLEEAERLCDRVAIIDK 206
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-209 |
8.67e-45 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 150.39 E-value: 8.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR------KARLAHV 74
Cdd:COG4555 1 MIEVENLSKKYGKV-PALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRkepreaRRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQFSYSVLDFVSFgrplCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVV 154
Cdd:COG4555 80 PDERGLYDRLTVRENIRY----FAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 155 LDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:COG4555 156 LDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGK 209
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-206 |
4.45e-43 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 146.10 E-value: 4.45e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFK---GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHvpQA 77
Cdd:COG1124 1 MLEVRNLSVSYGqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKA--FR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQF----SYSVLD-----FVSFGRPL-CGGILPSPgskdlEQSAQMLADLGV--SYLeSKNINQISGGELQMCYIARA 145
Cdd:COG1124 79 RRVQMvfqdPYASLHprhtvDRILAEPLrIHGLPDRE-----ERIAELLEQVGLppSFL-DRYPHQLSGGQRQRVAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:COG1124 153 LILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQ 213
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-207 |
1.36e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 151.21 E-value: 1.36e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPT----FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHV-P 75
Cdd:COG1123 260 LLEVRNLSKRYPVRGKGgvraVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLrE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQF-----------SYSVLDFVSFGRPLCGGIlpsPGSKDLEQSAQMLADLGVSY-LESKNINQISGGELQMCYIA 143
Cdd:COG1123 340 LRRRVQMvfqdpysslnpRMTVGDIIAEPLRLHGLL---SRAERRERVAELLERVGLPPdLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYD 480
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-190 |
1.61e-41 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 141.72 E-value: 1.61e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID---GRKARLAHV 74
Cdd:COG1136 4 LLELRNLTKSYGTGEGEVTalrGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDissLSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 pQARHI----QFSY-----SVLDFVSFgrPLcgGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:COG1136 84 -RRRHIgfvfQFFNllpelTALENVAL--PL--LLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:COG1136 159 LVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTH 203
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-200 |
5.75e-41 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 140.96 E-value: 5.75e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----GRK-----AR 70
Cdd:COG3638 2 MLELRNLSKRYPGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDvtalrGRAlrrlrRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LAHVPQarhiQF----SYSVLDFVSFGR----PLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYI 142
Cdd:COG3638 82 IGMIFQ----QFnlvpRLSVLTNVLAGRlgrtSTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIAD 200
Cdd:COG3638 158 ARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYAD 215
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-208 |
5.93e-41 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 139.91 E-value: 5.93e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQ 76
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVtalEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGepVTGPGPDRGYVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 arhiQFS----YSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:cd03293 81 ----QDAllpwLTVLDNVALG-LELQGV---PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRK 208
Cdd:cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSAR 208
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-207 |
6.26e-41 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 137.76 E-value: 6.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLahVPQARHIqf 82
Cdd:cd00267 1 EIENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL--EELRRRI-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 83 sysvldfvsfgrplcgGILPspgskdleqsaqmladlgvsyleskninQISGGELQMCYIARALVSEPDIVVLDEPESNL 162
Cdd:cd00267 76 ----------------GYVP----------------------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1235141840 163 DFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd00267 112 DPASRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLKD 155
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-228 |
1.07e-40 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 139.73 E-value: 1.07e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID----GRKARLAhvpQ 76
Cdd:COG1127 5 MIEVRNLTKSF-GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitglSEKELYE---L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHI----QF-----SYSVLDFVSFgrPL--CGGILPspgsKDLEQSAQM-LADLGVSYLESKNINQISGGelqMCY--- 141
Cdd:COG1127 81 RRRIgmlfQGgalfdSLTVFENVAF--PLreHTDLSE----AEIRELVLEkLELVGLPGAADKMPSELSGG---MRKrva 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE-YFFGNKEVVLQ 220
Cdd:COG1127 152 LARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKiIAEGTPEELLA 231
|
250
....*....|
gi 1235141840 221 --EERLGEYF 228
Cdd:COG1127 232 sdDPWVRQFL 241
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-206 |
1.78e-40 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 138.79 E-value: 1.78e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHV-PQ 76
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVkalDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRkIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQF----SYSVLDFV-SFGRPLCGGILP-SPGSKDLEQSAQMLADL-GV----SYLESKnINQISGGELQMCYIARA 145
Cdd:cd03257 81 RKEIQMvfqdPMSSLNPRmTIGEQIAEPLRIhGKLSKKEARKEAVLLLLvGVglpeEVLNRY-PHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-232 |
2.91e-40 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 139.14 E-value: 2.91e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----GRK--ARLAH 73
Cdd:PRK13548 2 MLEARNLSVRLGGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPladwsPAElaRRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIQFSYSVLDFVSFGRplcggiLPSPGSKDLEQS--AQMLADLGVSYLESKNINQISGGELQMCYIARALV---- 147
Cdd:PRK13548 81 LPQHSSLSFPFTVEEVVAMGR------APHGLSRAEDDAlvAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwe 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 148 --SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVVLQEERL 224
Cdd:PRK13548 155 pdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQgRLVADGTPAEVLTPETL 234
|
....*...
gi 1235141840 225 GEYFNVPV 232
Cdd:PRK13548 235 RRVYGADV 242
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-190 |
3.99e-40 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 137.23 E-value: 3.99e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKAR------LAHV 74
Cdd:COG4133 2 MLEAENLSCRRGER-LLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARedyrrrLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQFSYSVLDFVSFGRPLcggilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVV 154
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAAL------YGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWL 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 1235141840 155 LDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTH 190
Cdd:COG4133 155 LDEPFTALDAAGVALLAELIAAH-LARGGAVLLTTH 189
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-205 |
7.13e-40 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 136.87 E-value: 7.13e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKA-----RLAHV 74
Cdd:COG4619 1 LELEGLSFRVGGK-PILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGkpLSAMPPpewrrQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQaRHIQFSYSVLDFVSFGRPLcggilpSPGSKDLEQSAQMLADLG--VSYLEsKNINQISGGELQMCYIARALVSEPDI 152
Cdd:COG4619 80 PQ-EPALWGGTVRDNLPFPFQL------RERKFDRERALELLERLGlpPDILD-KPVERLSGGERQRLALIRALLLQPDV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG4619 152 LLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTL 204
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-207 |
7.64e-40 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 135.60 E-value: 7.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVpqaRHIq 81
Cdd:cd03230 1 IEVRNLSKRYGKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK---RRI- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 fsysvldfvsfgrplcgGILPspgskdleQSAQMLADLGVS-YLEskninqISGGELQMCYIARALVSEPDIVVLDEPES 160
Cdd:cd03230 76 -----------------GYLP--------EEPSLYENLTVReNLK------LSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 161 NLDFNNQARIIKLLQQLSREkNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03230 125 GLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNN 170
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-207 |
8.06e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 138.30 E-value: 8.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAF---KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVP 75
Cdd:COG1116 7 ALELRGVSKRFptgGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGkpVTGPGPDRGVVF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QarhiqfSY------SVLDFVSFGRPLCGGilpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:COG1116 87 Q------EPallpwlTVLDNVALGLELRGV----PKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAND 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSA 214
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-207 |
9.70e-40 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 136.50 E-value: 9.70e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVP-QARHI 80
Cdd:cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD-----VTGVPpERRNI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSY---------SVLDFVSFGrplcGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:cd03259 75 GMVFqdyalfphlTVAENIAFG----LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-224 |
3.00e-39 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 136.16 E-value: 3.00e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARH-- 79
Cdd:cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRqi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 --IQFSY------SVLDFVSFGR----PLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALV 147
Cdd:cd03256 81 gmIFQQFnlierlSVLENVLSGRlgrrSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYFFGNKEVVLQEERL 224
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVL 237
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-229 |
4.09e-39 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 143.82 E-value: 4.09e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAH 73
Cdd:COG2274 474 IELENVSFRYPGDSpPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQidpaslrRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQM--LAD------LGVSYLESKNINQISGGELQMCYIARA 145
Cdd:COG2274 554 VLQDVFL-FSGTIRENITLGDP-------DATDEEIIEAARLagLHDfiealpMGYDTVVGEGGSNLSGGQRQRLAIARA 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH---FINHansiADKCLLMKR-KEYFFGNKEVVLqe 221
Cdd:COG2274 626 LLRNPRILILDEATSALDAETEAIILENLRRLLKGR--TVIIIAHrlsTIRL----ADRIIVLDKgRIVEDGTHEELL-- 697
|
....*...
gi 1235141840 222 ERLGEYFN 229
Cdd:COG2274 698 ARKGLYAE 705
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-207 |
6.46e-39 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 141.19 E-value: 6.46e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAF-KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQP---LSGTCHIGGID-------GRKA 69
Cdd:COG1123 4 LLEVRDLSVRYpGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHggrISGEVLLDGRDllelseaLRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 RLAHVPQARHIQFS-YSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVS 148
Cdd:COG1123 84 RIGMVFQDPMTQLNpVTVGDQIAEA-LENLGL---SRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG1123 160 DPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDD 218
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-206 |
9.67e-38 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 131.23 E-value: 9.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARL---AHVPQ-A 77
Cdd:cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPiKAKERRksiGYVMQdV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSYSVLDFVSFGRPlcggilpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:cd03226 81 DYQLFTDSVREELLLGLK--------ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 158 PESNLDFNNQARIIKLLQQLSREKnVTIILNTHFINHANSIADKCLLMK 206
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELAAQG-KAVIVITHDYEFLAKVCDRVLLLA 200
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-207 |
1.38e-37 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 134.84 E-value: 1.38e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHV-PQARH 79
Cdd:COG3842 5 ALELENVSKRY-GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRD-----VTGLpPEKRN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 I----QfSY------SVLDFVSFGrpLCGGILPspgSKDLEQSAQ-MLADLGVSYLESKNINQISGGELQMCYIARALVS 148
Cdd:COG3842 79 VgmvfQ-DYalfphlTVAENVAFG--LRMRGVP---KAEIRARVAeLLELVGLEGLADRYPHQLSGGQQQRVALARALAP 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG3842 153 EPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMND 211
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-190 |
2.50e-37 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 129.04 E-value: 2.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAH 73
Cdd:cd03228 1 IEFKNVSFSYPGRPkPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDldleslrKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDfvsfgrplcggilpspgskdleqsaqmladlgvsyleskNInqISGGELQMCYIARALVSEPDIV 153
Cdd:cd03228 81 VPQDPFL-FSGTIRE---------------------------------------NI--LSGGQRQRIAIARALLRDPPIL 118
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALAKGK--TVIVIAH 153
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
13-205 |
3.26e-37 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 129.28 E-value: 3.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 13 GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrKARLAHVPQARHI--QFSYSVLDFV 90
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----GARVAYVPQRSEVpdSLPLTVRDLV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 91 SFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARI 170
Cdd:NF040873 79 AMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERI 158
|
170 180 190
....*....|....*....|....*....|....*
gi 1235141840 171 IKLLQQLSREKnVTIILNTHFINHANSiADKCLLM 205
Cdd:NF040873 159 IALLAEEHARG-ATVVVVTHDLELVRR-ADPCVLL 191
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-232 |
1.21e-36 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 129.75 E-value: 1.21e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKAR-----LAH 73
Cdd:PRK11231 2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDkpISMLSSRqlarrLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIQFSYSVLDFVSFGRplcggilpSP--------GSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:PRK11231 81 LPQHHLTPEGITVRELVAYGR--------SPwlslwgrlSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSRE-KNVTIILntHFINHANSIADKCLLMKRKEYFF-GNKEVVLQEER 223
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQgKTVVTVL--HDLNQASRYCDHLVVLANGHVMAqGTPEEVMTPGL 230
|
....*....
gi 1235141840 224 LGEYFNVPV 232
Cdd:PRK11231 231 LRTVFDVEA 239
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-207 |
1.37e-36 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 128.71 E-value: 1.37e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKAR------LAH 73
Cdd:cd03224 1 LEVENLN-AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGrdITGLPPHeraragIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSY-SV---LDFVSFGRPlcggilPSPGSKDLEQS-------AQMLADLGvsyleskniNQISGGELQMCYI 142
Cdd:cd03224 80 VPEGRRI-FPElTVeenLLLGAYARR------RAKRKARLERVyelfprlKERRKQLA---------GTLSGGEQQMLAI 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLER 207
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-190 |
3.80e-36 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 127.48 E-value: 3.80e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQAR-H 79
Cdd:COG2884 1 MIRFENVSKRYPGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 I----Q-----FSYSVLDFVSFgrPLcgGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:COG2884 81 IgvvfQdfrllPDRTVYENVAL--PL--RVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTH 190
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATH 195
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-205 |
6.49e-36 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 127.41 E-value: 6.49e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKAR------LA 72
Cdd:COG0410 3 MLEVENLH-AGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGedITGLPPHriarlgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIqFSY-SV---LDFVSFGRPLCGGIlpspgSKDLEQS-------AQMLADLGvsyleskniNQISGGELQMCY 141
Cdd:COG0410 82 YVPEGRRI-FPSlTVeenLLLGAYARRDRAEV-----RADLERVyelfprlKERRRQRA---------GTLSGGEQQMLA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG0410 147 IGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIADRAYVL 209
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-220 |
8.55e-36 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 126.85 E-value: 8.55e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID---GRKARLAHVPQAR 78
Cdd:cd03261 1 IELRGLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDisgLSEAELYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQF-------SYSVLDFVSFgrPLC-GGILPspgSKDLEQSAQM-LADLGVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:cd03261 80 GMLFqsgalfdSLTVFENVAF--PLReHTRLS---EEEIREIVLEkLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADK-CLLMKRKEYFFGNKEVVLQ 220
Cdd:cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRiAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-205 |
1.52e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 126.16 E-value: 1.52e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARLAHVPQ 76
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVtalKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDlTLLSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHI-----QF----SYSVLDFVSFgrPLcgGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALV 147
Cdd:cd03258 81 RRRIgmifqHFnllsSRTVFENVAL--PL--EIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-207 |
2.07e-34 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 123.25 E-value: 2.07e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKaRLAHVPQARHIQ 81
Cdd:cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFVSFGRP---LCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:cd03265 79 FQDLSVDDELTGWEnlyIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 159 ESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-227 |
3.04e-34 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 123.21 E-value: 3.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFafKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----GRKARLAHVPQ 76
Cdd:cd03299 1 LKVENLSK--DWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDitnlpPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQFSYSVLDFVSFGRPLcggiLPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKK----RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE-YFFGNKEVVL---QEERLGEY 227
Cdd:cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKlIQVGKPEEVFkkpKNEFVAEF 229
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
18-158 |
4.68e-34 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 120.06 E-value: 4.68e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 18 FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-------GRKARLAHVPQARHIQFSYSVLDFV 90
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDltdderkSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 91 SFGRPLCGgiLPSPGSKDleQSAQMLADLGVSYLESKNI----NQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:pfam00005 81 RLGLLLKG--LSKREKDA--RAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-207 |
7.74e-34 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 121.15 E-value: 7.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGeILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK------ARLAHVP 75
Cdd:cd03264 1 LQLENLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKqpqklrRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QarhiQFSY----SVLDFVSFGRPLcGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:cd03264 79 Q----EFGVypnfTVREFLDYIAWL-KGI---PSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNK 204
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-190 |
8.46e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 127.96 E-value: 8.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAH 73
Cdd:COG4987 334 LELEDVSFRYPGAGrPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDldeddlrRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcggilpspGSKDlEQSAQMLADLGVSYLESKNIN-----------QISGGELQMCYI 142
Cdd:COG4987 414 VPQRPHL-FDTTLRENLRLARP---------DATD-EELWAALERVGLGDWLAALPDgldtwlgeggrRLSGGERRRLAL 482
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:COG4987 483 ARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITH 528
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-230 |
9.35e-34 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 125.72 E-value: 9.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID---------GRkaRL 71
Cdd:PRK09536 3 MIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDvealsaraaSR--RV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQFSYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADK-CLLMKRKEYFFGNKEVVLQEERLGEYFNV 230
Cdd:PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDElVLLADGRVRAAGPPADVLTADTLRAAFDA 238
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-202 |
1.05e-33 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 121.39 E-value: 1.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPT---FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-------DGRkAR 70
Cdd:COG4181 8 IIELRGLTKTVGTGAGEltiLKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQdlfaldeDAR-AR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LahvpQARHIQFsysVldFVSFgrPLcggiLPS---------P----GSKDLEQSA-QMLADLGVSYLESKNINQISGGE 136
Cdd:COG4181 87 L----RARHVGF---V--FQSF--QL----LPTltalenvmlPlelaGRRDARARArALLERVGLGHRLDHYPAQLSGGE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 137 LQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNThfinHANSIADKC 202
Cdd:COG4181 152 QQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVT----HDPALAARC 213
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-206 |
4.07e-33 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 118.44 E-value: 4.07e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHIQ 81
Cdd:cd03229 1 LELKNVSKRYGQK-TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSY---------SVLDFVSFGrplcggilpspgskdleqsaqmladlgvsyleskninqISGGELQMCYIARALVSEPDI 152
Cdd:cd03229 80 MVFqdfalfphlTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDV 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-207 |
9.54e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 124.87 E-value: 9.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR-------KARLAHV 74
Cdd:COG4988 337 IELEDVSFSYPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSdldpaswRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQM--LADLgVSYLESK-------NINQISGGELQMCYIARA 145
Cdd:COG4988 417 PQNPYL-FAGTIRENLRLGRP-------DASDEELEAALEAagLDEF-VAALPDGldtplgeGGRGLSGGQAQRLALARA 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTHFINHANsIADKCLLMKR 207
Cdd:COG4988 488 LLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLA-QADRILVLDD 546
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-209 |
1.46e-32 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 118.38 E-value: 1.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAH------V 74
Cdd:cd03263 1 LQIRNLTKTYKKGTkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAArqslgyC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQAR----------HIQFsysvldfvsFGRpLCGGilpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIAR 144
Cdd:cd03263 81 PQFDalfdeltvreHLRF---------YAR-LKGL----PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGK 209
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-207 |
1.52e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 117.77 E-value: 1.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG---IDGRKARLAHVPQAR 78
Cdd:cd03269 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGkplDIAARNRIGYLPEER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSYSVLD-FVSFGRpLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:cd03269 80 GLYPKMKVIDqLVYLAQ-LKG----LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1235141840 158 PESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03269 155 PFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNK 203
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-190 |
2.28e-32 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 117.69 E-value: 2.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKG-RSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR-------KARLAH 73
Cdd:cd03245 3 IEFRNVSFSYPNqEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRqldpadlRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPLcggilpspgSKDLE-QSAQMLAdlGVSYLESKNIN-----------QISGGELQMCY 141
Cdd:cd03245 83 VPQDVTL-FYGTLRDNITLGAPL---------ADDERiLRAAELA--GVTDFVNKHPNgldlqigergrGLSGGQRQAVA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITH 197
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-205 |
2.75e-32 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 116.16 E-value: 2.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHvpqarhi 80
Cdd:cd03246 1 LEVENVSFRYPGAEpPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 qfsysvldfvsFGRplCGGILPspgskdleQSAQMLADlgvSYLEskNInqISGGELQMCYIARALVSEPDIVVLDEPES 160
Cdd:cd03246 74 -----------LGD--HVGYLP--------QDDELFSG---SIAE--NI--LSGGQRQRLGLARALYGNPRILVLDEPNS 125
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1235141840 161 NLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSiADKCLLM 205
Cdd:cd03246 126 HLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVL 168
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-206 |
2.33e-31 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 116.52 E-value: 2.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKAR----LAHVPQA 77
Cdd:PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALqknlVAYVPQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSYSVL--DFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVL 155
Cdd:PRK15056 87 EEVDWSFPVLveDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 156 DEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK15056 167 DEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYTVMVK 216
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-204 |
5.19e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 114.47 E-value: 5.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFeniSFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVPQAR-- 78
Cdd:COG3840 1 MLRLDDLTYRYGDFPLRF---DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQD-----LTALPPAErp 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 -------HIQFSY-SVLDFVSFGRplcggilpSPGSK----DLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARAL 146
Cdd:COG3840 73 vsmlfqeNNLFPHlTVAQNIGLGL--------RPGLKltaeQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCL 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLL 204
Cdd:COG3840 145 VRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLL 202
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-205 |
5.38e-31 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 114.74 E-value: 5.38e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS--------------------PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHI 61
Cdd:cd03267 1 IEVSNLSKSYRVYSkepgligslkslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 62 GGIDGRKARLAHVPQ-----ARHIQFSY--SVLDFVSFGRPLCgGILPSPGSKDLEQSAQMLaDLGvsYLESKNINQISG 134
Cdd:cd03267 81 AGLVPWKRRKKFLRRigvvfGQKTQLWWdlPVIDSFYLLAAIY-DLPPARFKKRLDELSELL-DLE--ELLDTPVRQLSL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 135 GELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:cd03267 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-207 |
5.75e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 114.74 E-value: 5.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKarlaHVPQARHIQ 81
Cdd:cd03296 3 IEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD----VPVQERNVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSY---------SVLDFVSFG---RPlcggILPSPGSKDLEQSAQMLADL-GVSYLESKNINQISGGELQMCYIARALVS 148
Cdd:cd03296 78 FVFqhyalfrhmTVFDNVAFGlrvKP----RSERPPEAEIRAKVHELLKLvQLDWLADRYPAQLSGGQRQRVALARALAV 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-205 |
5.88e-31 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 119.70 E-value: 5.88e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-------DGRKARLAHV 74
Cdd:TIGR02857 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVpladadaDSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDFVSFGRplcggilpsPGSKDLE-QSAQMLADL---------GVSYLESKNINQISGGELQMCYIAR 144
Cdd:TIGR02857 402 PQHPFL-FAGTIAENIRLAR---------PDASDAEiREALERAGLdefvaalpqGLDTPIGEGGAGLSGGQAQRLALAR 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSRekNVTIILNTHFINHAnSIADKCLLM 205
Cdd:TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA-ALADRIVVL 529
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
3-207 |
6.65e-31 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 114.16 E-value: 6.65e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKAR--LAHV 74
Cdd:TIGR03410 2 EVSNLN-VYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDitklppHERARagIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQFSYSVLDFVSFGRPLCGGilpspGSKDLEQSA--------QMLADLGvsyleskniNQISGGELQMCYIARAL 146
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPR-----RSRKIPDEIyelfpvlkEMLGRRG---------GDLSGGQQQQLAIARAL 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 147 VSEPDIVVLDEPESNLdfnnQARIIKLLQQ----LSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:TIGR03410 147 VTRPKLLLLDEPTEGI----QPSIIKDIGRvirrLRAEGGMAILLVEQYLDFARELADRYYVMER 207
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-207 |
9.32e-31 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 111.75 E-value: 9.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggiDGRKarlahvpqarhiq 81
Cdd:cd03216 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV---DGKE------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 fsysvldfVSFGRPlcggilpspgskdleQSAQmlaDLGVSYlesknINQISGGELQMCYIARALVSEPDIVVLDEPESN 161
Cdd:cd03216 64 --------VSFASP---------------RDAR---RAGIAM-----VYQLSVGERQMVEIARALARNARLLILDEPTAA 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1235141840 162 LDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03216 113 LTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRD 157
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-207 |
1.49e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 112.73 E-value: 1.49e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID----GRKAR-LAHVPQ 76
Cdd:cd03301 1 VELENVTKRFGNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDvtdlPPKDRdIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQFSYSVLDFVSFGRPLcGGILPSPGSKDLEQSAQMladLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:cd03301 80 NYALYPHMTVYDNIAFGLKL-RKVPKDEIDERVREVAEL---LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 157 EPESNLD----FNNQARIIKLLQQLsrekNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03301 156 EPLSNLDaklrVQMRAELKRLQQRL----GTTTIYVTHDQVEAMTMADRIAVMND 206
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
6-206 |
1.55e-30 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 112.77 E-value: 1.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 6 NLTFAFKGRSPTFE-NISFSLPEgEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI---DGRKaRLAHVPQARHIQ 81
Cdd:cd03297 1 MLCVDIEKRLPDFTlKIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfDSRK-KINLPPQQRKIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 F---SYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:cd03297 79 LvfqQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1235141840 159 ESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-205 |
1.93e-30 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 113.64 E-value: 1.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQAR 78
Cdd:PRK11248 1 MLQISHLYADYGGK-PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGkpVEGPGAERGVVFQNE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSYSVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:PRK11248 80 GLLPWRNVQDNVAFGLQLAG----VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 159 ESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-205 |
3.42e-30 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 112.27 E-value: 3.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLY-----QPLSGTCHIGGID---------GR 67
Cdd:cd03260 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDiydldvdvlEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 68 KARLAHVPQaRHIQFSYSVLDFVSFGRPLcGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALV 147
Cdd:cd03260 80 RRRVGMVFQ-KPNPFPGSIYDNVAYGLRL-HGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREknVTIILNTHFINHANSIADKCLLM 205
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFL 213
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-190 |
3.97e-30 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 114.86 E-value: 3.97e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkARLAHVPQARHIQ 81
Cdd:COG1118 3 IEVRNISKRFGSF-TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD---LFTNLPPRERRVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 F---SY------SVLDFVSFGRPlcggILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:COG1118 79 FvfqHYalfphmTVAENIAFGLR----VRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEV 154
|
170 180 190
....*....|....*....|....*....|....*...
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:COG1118 155 LLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTH 192
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-219 |
1.36e-29 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 111.24 E-value: 1.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR-------KARLAHV 74
Cdd:cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIReqdpvelRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQFSYSVLDFVsfgrplcgGILPS----PGSKDLEQSAQMLADLGvsyLESKNI-----NQISGGELQMCYIARA 145
Cdd:cd03295 81 IQQIGLFPHMTVEENI--------ALVPKllkwPKEKIRERADELLALVG---LDPAEFadrypHELSGGQQQRVGVARA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYF-FGNKEVVL 219
Cdd:cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVqVGTPDEIL 224
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-207 |
2.10e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 110.15 E-value: 2.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR------KARL 71
Cdd:cd03266 1 MITADALTKRFRDVKKTVqavDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVkepaeaRRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQFSYSVLDFVS-FGRplcggiLPSPGSKDLEQSAQMLAD-LGVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEyFAG------LYGLKGDELTARLEELADrLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHR 211
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-206 |
2.49e-29 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 112.86 E-value: 2.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHV-PQARH 79
Cdd:COG3839 3 SLELENVSKSY-GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRD-----VTDLpPKDRN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 I----QfSY------SVLDFVSFG---RPLcggilpspgSKD-----LEQSAQMLaDLGvSYLESKnINQISGGELQMCY 141
Cdd:COG3839 77 IamvfQ-SYalyphmTVYENIAFPlklRKV---------PKAeidrrVREAAELL-GLE-DLLDRK-PKQLSGGQRQRVA 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFN--NQARIikLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:COG3839 144 LGRALVREPKVFLLDEPLSNLDAKlrVEMRA--EIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMN 208
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-205 |
1.02e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 109.18 E-value: 1.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRS---PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVP 75
Cdd:COG4525 3 MLTVRHVSVRYPGGGqpqPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGvpVTGPGADRGVVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QArHIQFSY-SVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVV 154
Cdd:COG4525 83 QK-DALLPWlNVLDNVAFGLRLRG----VPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 155 LDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG4525 158 MDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-205 |
1.45e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 109.40 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQAR 78
Cdd:PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGepIKYDKKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQ--------FSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK13639 81 GIVfqnpddqlFAPTVEEDVAFG-PLNLGL---SKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVM 210
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-205 |
1.94e-28 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 108.74 E-value: 1.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLT--------FAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID----GRK 68
Cdd:TIGR02769 2 LLEVRDVThtyrtgglFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDlyqlDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ARLAHvpqARHIQF----SYSVLDfvsfGRPLCGGILPSP--------GSKDLEQSAQMLADLGV-SYLESKNINQISGG 135
Cdd:TIGR02769 82 QRRAF---RRDVQLvfqdSPSAVN----PRMTVRQIIGEPlrhltsldESEQKARIAELLDMVGLrSEDADKLPRQLSGG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 136 ELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-218 |
2.61e-28 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 110.17 E-value: 2.61e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----GRKARLAHVPQ 76
Cdd:PRK10851 3 IEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDvsrlhARDRKVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 A----RHIqfsySVLDFVSFGRPlcggILP---SPGSKDLEQS-AQMLADLGVSYLESKNINQISGGELQMCYIARALVS 148
Cdd:PRK10851 82 HyalfRHM----TVFDNIAFGLT----VLPrreRPNAAAIKAKvTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRkeyffGNKEVV 218
Cdd:PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ-----GNIEQA 218
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-190 |
4.14e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 109.02 E-value: 4.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLT--F-----------AFKGR-SPTFE------NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCH 60
Cdd:COG4586 1 IIEVENLSktYrvyekepglkgALKGLfRREYReveavdDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 61 IGGIDGRKARLAHvpqARHI--------QFSY--SVLDfvSFgrPLCGGI--LPspgSKDLEQSAQMLAD-LGVSYLESK 127
Cdd:COG4586 81 VLGYVPFKRRKEF---ARRIgvvfgqrsQLWWdlPAID--SF--RLLKAIyrIP---DAEYKKRLDELVElLDLGELLDT 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 128 NINQISGGElQM-CYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:COG4586 151 PVRQLSLGQ-RMrCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSH 213
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-207 |
9.08e-28 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 105.77 E-value: 9.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAHV 74
Cdd:cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDisrkslrSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDFVSFGRplcggilPSPGSKDLEQSAQML-ADLGVSYLE-------SKNINQISGGELQMCYIARAL 146
Cdd:cd03254 83 LQDTFL-FSGTIMENIRLGR-------PNATDEEVIEAAKEAgAHDFIMKLPngydtvlGENGGNLSQGERQLLAIARAM 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHansiADKCLLMKR 207
Cdd:cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIahrLST--IKN----ADKILVLDD 212
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-198 |
1.11e-27 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 110.64 E-value: 1.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAHV 74
Cdd:COG1132 340 IEFENVSFSYPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDltleslrRQIGVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQaRHIQFSYSVLDFVSFGRplcggilPSPGSKDLEQSAQ-----------------MLADLGVSyleskninqISGGEL 137
Cdd:COG1132 420 PQ-DTFLFSGTIRENIRYGR-------PDATDEEVEEAAKaaqahefiealpdgydtVVGERGVN---------LSGGQR 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 138 QMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:COG1132 483 QRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIahrLST--IRNADRI 544
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-205 |
1.16e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 107.83 E-value: 1.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPL---SGTCHIGGIDgrkarLAHV 74
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVkavDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPgitSGEILFDGED-----LLKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQA-------RHIQF----SYSVLDFV-----SFGRPLcggILPSPGSKD--LEQSAQMLADLGVSYLESKnIN----QI 132
Cdd:COG0444 76 SEKelrkirgREIQMifqdPMTSLNPVmtvgdQIAEPL---RIHGGLSKAeaRERAIELLERVGLPDPERR-LDryphEL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 133 SGGELQ--McyIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG0444 152 SGGMRQrvM--IARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVM 224
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-205 |
2.27e-27 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 105.60 E-value: 2.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQAR 78
Cdd:PRK11264 3 AIEVKNLVKKFHGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDitIDTARSLSQQKGLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 ----HIQFSY---------SVLDFVSFGRPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:PRK11264 82 qlrqHVGFVFqnfnlfphrTVLENIIEGPVIVKGE---PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILnTHFINHANSIADKCLLM 205
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIV-THEMSFARDVADRAIFM 217
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-187 |
2.55e-27 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 105.51 E-value: 2.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTfENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKA-RLAHVPQA 77
Cdd:COG0411 4 LLEVRGLTKRFGGLVAV-DDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGrdITGLPPhRIARLGIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 R---HIQ-F-SYSVLDFV------SFGRPLCGGILPSPGSKD-----LEQSAQMLADLGVSYLESKNINQISGGELQMCY 141
Cdd:COG0411 83 RtfqNPRlFpELTVLENVlvaahaRLGRGLLAALLRLPRARReereaRERAEELLERVGLADRADEPAGNLSYGQQRRLE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 142 IARALVSEPDIVVLDEP-------ESnldfnnqARIIKLLQQLSREKNVTIIL 187
Cdd:COG0411 163 IARALATEPKLLLLDEPaaglnpeET-------EELAELIRRLRDERGITILL 208
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-205 |
4.89e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 104.24 E-value: 4.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVPQA-RHI 80
Cdd:cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD-----ITNLPPHkRPV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 Q--F-SY------SVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:cd03300 75 NtvFqNYalfphlTVFENIAFGLRLKK----LPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-190 |
5.28e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 108.60 E-value: 5.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-------DGRKARLAHV 74
Cdd:TIGR02868 335 LELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVpvssldqDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDFVSFGRPLCGG-----ILPSPGskdLEQSAQMLADlGVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:TIGR02868 415 AQDAHL-FDTTVRENLRLARPDATDeelwaALERVG---LADWLRALPD-GLDTVLGEGGARLSGGERQRLALARALLAD 489
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:TIGR02868 490 APILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITH 528
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-190 |
7.56e-27 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 103.26 E-value: 7.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQAR-HI 80
Cdd:cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRrKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSY---------SVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:cd03292 81 GVVFqdfrllpdrNVYENVAFALEVTG----VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQlSREKNVTIILNTH 190
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATH 194
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-207 |
7.89e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 105.19 E-value: 7.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHVpqaRHI 80
Cdd:COG4152 1 MLELKGLTKRFGDK-TAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVL---WDGEPLDPEDR---RRI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QF---------SYSVLDFVS-FGRpLCGgiLPSPGSKdlEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:COG4152 74 GYlpeerglypKMKVGEQLVyLAR-LKG--LSKAEAK--RRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDP 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG4152 149 ELLILDEPFSGLDPVNVELLKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINK 204
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-206 |
9.42e-27 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 105.95 E-value: 9.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNnltfaFKGRSPTFE-NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG---IDGRKA------- 69
Cdd:COG4148 2 MLEVD-----FRLRRGGFTlDVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlQDSARGiflpphr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 -RLAHVPQ-AR---HiqfsYSVLDFVSFGRPlcggilPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIAR 144
Cdd:COG4148 77 rRIGYVFQeARlfpH----LSVRGNLLYGRK------RAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGR 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:COG4148 147 ALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLE 208
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-206 |
1.06e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 104.30 E-value: 1.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAF-KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARH 79
Cdd:PRK13632 7 MIKVENVSFSYpNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 I-------QF-SYSVLDFVSFGrpLCGGILPSPGSK----DLEQSAQMLadlgvSYLESKNINqISGGELQMCYIARALV 147
Cdd:PRK13632 87 IifqnpdnQFiGATVEDDIAFG--LENKKVPPKKMKdiidDLAKKVGME-----DYLDKEPQN-LSGGQKQRVAIASVLA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHAnSIADKCLLMK 206
Cdd:PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFS 216
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-200 |
1.61e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 107.07 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 4 VNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQARHIQFS 83
Cdd:COG0488 1 LENLSKSFGGR-PLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSI----PKGLRIGYLPQEPPLDDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 84 YSVLDFVSFGRPLCGGIL---------PSPGSKDLEQSA-------------------QMLADLGVSYLE-SKNINQISG 134
Cdd:COG0488 76 LTVLDTVLDGDAELRALEaeleeleakLAEPDEDLERLAelqeefealggweaearaeEILSGLGFPEEDlDRPVSELSG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 135 GELQMCYIARALVSEPDIVVLDEPESNLDFNnqaRIIKLLQQLSREKNvTIILNTH---FINH-ANSIAD 200
Cdd:COG0488 156 GWRRRVALARALLSEPDLLLLDEPTNHLDLE---SIEWLEEFLKNYPG-TVLVVSHdryFLDRvATRILE 221
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-209 |
2.48e-26 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 99.83 E-value: 2.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGgidgrkarlahvpqarhiq 81
Cdd:cd03221 1 IELENLSKTYGGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 fsysvldfvsfgrplcggilpspgskdleqsaqmlADLGVSYLEskninQISGGELQMCYIARALVSEPDIVVLDEPESN 161
Cdd:cd03221 61 -----------------------------------STVKIGYFE-----QLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 162 LDFNNQARIIKLLQQLSReknvTIILNTH---FINHansIADKCLLMKRKE 209
Cdd:cd03221 101 LDLESIEALEEALKEYPG----TVILVSHdryFLDQ---VATKIIELEDGK 144
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
20-200 |
2.69e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.26 E-value: 2.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHVPQARH--IQFSY---------SVLD 88
Cdd:COG1129 22 GVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEIL---LDGEPVRFRSPRDAQAagIAIIHqelnlvpnlSVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 89 FVSFGR-PLCGGILPSpgSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:COG1129 99 NIFLGRePRRGGLIDW--RAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTEREV 176
|
170 180 190
....*....|....*....|....*....|...
gi 1235141840 168 ARIIKLLQQLsREKNVTIILNTHFINHANSIAD 200
Cdd:COG1129 177 ERLFRIIRRL-KAQGVAIIYISHRLDEVFEIAD 208
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
20-206 |
3.06e-26 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 102.72 E-value: 3.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDG-----------RKARLAHVPQARHIQFSYSVLD 88
Cdd:cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIaamsrkelrelRRKKISMVFQSFALLPHRTVLE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 89 FVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQA 168
Cdd:cd03294 122 NVAFGLEVQG----VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197
|
170 180 190
....*....|....*....|....*....|....*...
gi 1235141840 169 RIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK 235
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-163 |
4.24e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 105.92 E-value: 4.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQARH- 79
Cdd:COG0488 315 VLELEGLSKSYGDK-TLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL----GETVKIGYFDQHQEe 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSYSVLDFVSFGRPlcggilpspgsKDLEQSA-QMLADLGVSYLE-SKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:COG0488 390 LDPDKTVLDELRDGAP-----------GGTEQEVrGYLGRFLFSGDDaFKPVGVLSGGEKARLALAKLLLSPPNVLLLDE 458
|
....*.
gi 1235141840 158 PESNLD 163
Cdd:COG0488 459 PTNHLD 464
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-195 |
5.14e-26 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 102.37 E-value: 5.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 5 NNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGtcHIGgIDGRK-ARLAHVPQARHIQF- 82
Cdd:PRK10253 11 EQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG--HVW-LDGEHiQHYASKEVARRIGLl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 83 --------SYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVV 154
Cdd:PRK10253 87 aqnattpgDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1235141840 155 LDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHA 195
Cdd:PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA 207
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
21-234 |
7.11e-26 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 101.46 E-value: 7.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 21 ISFSLPEGEILCILGPNGVGKTTLLKTITGLYqPLSGTCHIGGIDGR---KARLAHV----PQARHIQFSYSVLDFVSFG 93
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSdwsAAELARHraylSQQQSPPFAMPVFQYLALH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 94 RPlcggilPSPGSKDLEQSAQMLA-DLGVSYLESKNINQISGGELQMCYIARALV-------SEPDIVVLDEPESNLDFN 165
Cdd:COG4138 94 QP------AGASSEAVEQLLAQLAeALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLLDEPMNSLDVA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 166 NQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVVLQEERLGEYFNVPVKR 234
Cdd:COG4138 168 QQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQgKLVASGETAEVMTPENLSEVFGVKFRR 236
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-209 |
7.60e-26 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 102.02 E-value: 7.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI--------DGRKaRLA 72
Cdd:PRK13635 6 IRVEHISFRYPDAAtYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVRR-QVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQF-SYSVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13635 85 MVFQNPDNQFvGATVQDDVAFGLENIG----VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSiADKCLLMKRKE 209
Cdd:PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGE 217
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-207 |
1.36e-25 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 102.88 E-value: 1.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLahvpQARHI- 80
Cdd:PRK11432 7 VVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI----QQRDIc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 ---QfSYSVLDFVSFGRPLCGGI----LPSPGSKDLEQSAQMLADLGvsYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:PRK11432 82 mvfQ-SYALFPHMSLGENVGYGLkmlgVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILKPKVL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 154 VLDEPESNLDFN----NQARIIKLLQQLsrekNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK11432 159 LFDEPLSNLDANlrrsMREKIRELQQQF----NITSLYVTHDQSEAFAVSDTVIVMNK 212
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-218 |
1.64e-25 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 100.57 E-value: 1.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTChiggIDGRKARLAHVPQARHI 80
Cdd:PRK09544 4 LVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI----KRNGKLRIGYVPQKLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 Q--FSYSVLDFVSFgRPLC--GGILPSpgskdleqsaqmLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:PRK09544 79 DttLPLTVNRFLRL-RPGTkkEDILPA------------LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYFFGNKEVV 218
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVV 207
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-205 |
1.64e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 99.53 E-value: 1.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQARH 79
Cdd:cd03262 1 IEIKNLHKSFGDF-HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGlkLTDDKKNINELRQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQF-SY------SVLDFVSFGRPLCGGIlpspgSKD--LEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:cd03262 80 MVFqQFnlfphlTVLENITLAPIKVKGM-----SKAeaEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREKnVTIILNTHFINHANSIADKCLLM 205
Cdd:cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTHEMGFAREVADRVIFM 208
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-205 |
1.69e-25 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 102.08 E-value: 1.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----G---RKA 69
Cdd:COG1135 1 MIELENLSKTFPTKGGPVTaldDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDltalsErelRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 RlahvpqaRHI-----QF----SYSVLDFVSFgrPL-CGGIlpsPGSKDLEQSAQM-----LADLGVSYLEskninQISG 134
Cdd:COG1135 81 R-------RKIgmifqHFnllsSRTVAENVAL--PLeIAGV---PKAEIRKRVAELlelvgLSDKADAYPS-----QLSG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 135 GELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG1135 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVL 214
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-224 |
4.24e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 100.31 E-value: 4.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVPQA- 77
Cdd:PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpIDYSRKGLMKLRESv 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 -------RHIQFSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK13636 85 gmvfqdpDNQLFSASVYQDVSFG-AVNLKL---PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYFF--GNKEVVLQEERL 224
Cdd:PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILqgNPKEVFAEKEML 236
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-207 |
5.47e-25 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 97.93 E-value: 5.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGR----SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrkaRLAHVPQA 77
Cdd:cd03250 1 ISVEDASFTWDSGeqetSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQfSYSVLDFVSFGRPL-----------CGgilpspgskdLEQSAQMLADLGVSYLESKNINqISGGELQMCYIARAL 146
Cdd:cd03250 75 PWIQ-NGTIRENILFGKPFdeeryekvikaCA----------LEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAV 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIK--LLQQLSREKnvTIILNTHFINHAnSIADKCLLMKR 207
Cdd:cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNK--TRILVTHQLQLL-PHADQIVVLDN 202
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-194 |
7.10e-25 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 100.58 E-value: 7.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTF----------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID---GRK 68
Cdd:COG4608 8 LEVRDLKKHFPVRGGLFgrtvgvvkavDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDitgLSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ARLAhvPQARHIQ--F--SYSVLDfvsfGRPLCGGILPSP------GSKD--LEQSAQMLADLGvsyLESKNIN----QI 132
Cdd:COG4608 88 RELR--PLRRRMQmvFqdPYASLN----PRMTVGDIIAEPlrihglASKAerRERVAELLELVG---LRPEHADryphEF 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 133 SGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINH 194
Cdd:COG4608 159 SGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYL----FISH 216
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-190 |
7.93e-25 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 98.46 E-value: 7.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAHV 74
Cdd:cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvtldslrRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARhIQFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQ--MLADLGVSYLESKNIN------QISGGELQMCYIARAL 146
Cdd:cd03253 81 PQDT-VLFNDTIGYNIRYGRP-------DATDEEVIEAAKaaQIHDKIMRFPDGYDTIvgerglKLSGGEKQRVAIARAI 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTH 190
Cdd:cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAH 194
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-206 |
1.20e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 100.41 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVP-QARHI 80
Cdd:PRK09452 15 VELRGISKSFDGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD-----ITHVPaENRHV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 Q--F-SY------SVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK09452 89 NtvFqSYalfphmTVFENVAFGLRMQK----TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 152 IVVLDEPESNLDFnnqariiKL-------LQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK09452 165 VLLLDESLSALDY-------KLrkqmqneLKALQRKLGITFVFVTHDQEEALTMSDRIVVMR 219
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-221 |
1.24e-24 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 101.75 E-value: 1.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKG-RSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR---KARLA-HV-- 74
Cdd:COG4618 331 LSVENLTVVPPGsKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSqwdREELGrHIgy 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 -PQarHIQ-FSYSVLDFVSfgRplcggiLPSPGSKDLEQSAQM-----------------LADLGvsyleskniNQISGG 135
Cdd:COG4618 411 lPQ--DVElFDGTIAENIA--R------FGDADPEKVVAAAKLagvhemilrlpdgydtrIGEGG---------ARLSGG 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 136 ELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINhANSIADKCLLMKR-KEYFFGN 214
Cdd:COG4618 472 QRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPS-LLAAVDKLLVLRDgRVQAFGP 549
|
....*..
gi 1235141840 215 KEVVLQE 221
Cdd:COG4618 550 RDEVLAR 556
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
11-206 |
1.41e-24 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 100.19 E-value: 1.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 11 FKGRSPTFE-NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI---DGRKA--------RLAHVPQAR 78
Cdd:TIGR02142 5 FSKRLGDFSlDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRtlfDSRKGiflppekrRIGYVFQEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSYSVLDFVSFGRPLCggilpsPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:TIGR02142 85 RLFPHLSVRGNLRYGMKRA------RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1235141840 159 ESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLE 206
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-205 |
1.47e-24 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 97.76 E-value: 1.47e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAHVpqAR 78
Cdd:COG1126 1 MIEIENLHKSF-GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGedLTDSKKDINKL--RR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HI-----QFS----YSVLDFVSFGrPLC-GGIlpspgSKD--LEQSAQMLADLGVSYLESKNINQISGGELQMCYIARAL 146
Cdd:COG1126 78 KVgmvfqQFNlfphLTVLENVTLA-PIKvKKM-----SKAeaEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARAL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnVTIILNTHFINHANSIADKCLLM 205
Cdd:COG1126 152 AMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEG-MTMVVVTHEMGFAREVADRVVFM 209
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-190 |
1.78e-24 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 96.41 E-value: 1.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHI-GGIDGRK--------ARLA 72
Cdd:cd03231 1 LEADELTCERDGRA-LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLnGGPLDFQrdsiarglLYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQarhIQFSYSVLDFVSFGRPLCGGilpspgskdlEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:cd03231 80 HAPG---IKTTLSVLENLRFWHADHSD----------EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL 146
|
170 180 190
....*....|....*....|....*....|....*...
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTH 190
Cdd:cd03231 147 WILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-190 |
2.12e-24 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 96.55 E-value: 2.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQAR-H 79
Cdd:TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRrR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSY---------SVLDFVSFgrPLcggILPSPGSKDLEQSAQMLADL-GVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:TIGR02673 81 IGVVFqdfrllpdrTVYENVAL--PL---EVRGKKEREIQRRVGAALRQvGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTH 190
Cdd:TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATH 195
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-201 |
2.41e-24 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.52 E-value: 2.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAhvpqARHIq 81
Cdd:cd03268 1 LKTNDLTKTYGKK-RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA----LRRI- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 fsysvldfvsfgrplcGGILPSPG-------SKDLEQSA-----------QMLADLGVSYLESKNINQISGGELQMCYIA 143
Cdd:cd03268 75 ----------------GALIEAPGfypnltaRENLRLLArllgirkkridEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADK 201
Cdd:cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADR 195
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-207 |
2.62e-24 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 97.69 E-value: 2.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHI 80
Cdd:PRK11701 6 LLSVRGLTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSYSVLDFV----------------SFGRPLCG------GILPSPGSKDLEQ---SAQMLADLGVSYleskninqiSGG 135
Cdd:PRK11701 85 RLLRTEWGFVhqhprdglrmqvsaggNIGERLMAvgarhyGDIRATAGDWLERveiDAARIDDLPTTF---------SGG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 136 ELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-206 |
2.73e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 97.88 E-value: 2.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKA-------RLAHV 74
Cdd:PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEnekwvrsKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQ-FSYSVLDFVSFGrPLCGGILPspgSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:PRK13647 85 FQDPDDQvFSSTVWDDVAFG-PVNMGLDK---DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLK 212
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-190 |
3.89e-24 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 95.50 E-value: 3.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKAR---------LA 72
Cdd:TIGR01189 1 LAARNLACSRGER-MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRdephenilyLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQarhIQFSYSVLDFVSFGRPLCGGilpspGSKDLEQSaqmLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:TIGR01189 80 HLPG---LKPELSALENLHFWAAIHGG-----AQRTIEDA---LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPL 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQlSREKNVTIILNTH 190
Cdd:TIGR01189 149 WILDEPTTALDKAGVALLAGLLRA-HLARGGIVLLTTH 185
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
20-190 |
7.78e-24 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 95.65 E-value: 7.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG-----------IDGRKARLAHVPQARHIQFSYSVLD 88
Cdd:PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpmsklssaakAELRNQKLGFIYQFHHLLPDFTALE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 89 FVSFgrPL-CGGILPSPGSkdlEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:PRK11629 107 NVAM--PLlIGKKKPAEIN---SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
170 180
....*....|....*....|...
gi 1235141840 168 ARIIKLLQQLSREKNVTIILNTH 190
Cdd:PRK11629 182 DSIFQLLGELNRLQGTAFLVVTH 204
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-190 |
1.21e-23 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 94.47 E-value: 1.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQP---LSGTCHIGGidgrkARLAHVP-Q 76
Cdd:COG4136 1 MLSLENLTITLGGR-PLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNG-----RRLTALPaE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHI----Q----FSY-SVLDFVSFGrplcggiLPS--PGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:COG4136 75 QRRIgilfQddllFPHlSVGENLAFA-------LPPtiGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:COG4136 148 LLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTH 192
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-228 |
1.22e-23 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 94.92 E-value: 1.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKARL--AH 73
Cdd:cd03218 1 LRAENLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDitklpmHKRARLgiGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIQFSYSVLDFVSfgrpLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:cd03218 80 LPQEASIFRKLTVEENIL----AVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKEYFF-GNKEVVLQEERLGEYF 228
Cdd:cd03218 156 LLDEPFAGVDPIAVQDIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAeGTPEEIAANELVRKVY 230
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-232 |
1.36e-23 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 95.62 E-value: 1.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 4 VNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKtITGLYQPLSGtchiGGI--DGR-------KA---RL 71
Cdd:PRK10575 14 LRNVSFRVPGRT-LLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSE----GEIllDAQpleswssKAfarKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQFSYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYFF-GNKEVVLQEERLGEYFNV 230
Cdd:PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAqGTPAELMRGETLEQIYGI 247
|
..
gi 1235141840 231 PV 232
Cdd:PRK10575 248 PM 249
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-207 |
1.67e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 95.88 E-value: 1.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPtFE-----NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID--GRKARLAHV 74
Cdd:PRK13637 3 IKIENLTHIYMEGTP-FEkkaldNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDitDKKVKLSDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQFSY--------SVLDFVSFGrPLCGGILPSPGSKDLEQSAQMLadlGVSY--LESKNINQISGGELQMCYIAR 144
Cdd:PRK13637 82 RKKVGLVFQYpeyqlfeeTIEKDIAFG-PINLGLSEEEIENRVKRAMNIV---GLDYedYKDKSPFELSGGQKRRVAIAG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
2-221 |
2.02e-23 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 98.57 E-value: 2.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAF-KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAH 73
Cdd:TIGR01842 317 LSVENVTIVPpGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQwdretfgKHIGY 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQArhIQ-FSYSVLDFVS-FGRP-----------LCGG---ILPSPGSKDLEqsaqmLADLGVSyleskninqISGGEL 137
Cdd:TIGR01842 397 LPQD--VElFPGTVAENIArFGENadpekiieaakLAGVhelILRLPDGYDTV-----IGPGGAT---------LSGGQR 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 138 QMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINhANSIADKCLLMKR-KEYFFGNKE 216
Cdd:TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPS-LLGCVDKILVLQDgRIARFGERD 538
|
....*
gi 1235141840 217 VVLQE 221
Cdd:TIGR01842 539 EVLAK 543
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
4-229 |
3.00e-23 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 94.26 E-value: 3.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 4 VNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKARL--AHVP 75
Cdd:TIGR04406 4 AENLIKSYKKR-KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDithlpmHERARLgiGYLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQFSYSVLDFVSfgrplcgGILPSPGSKDLEQSAQ----MLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:TIGR04406 83 QEASIFRKLTVEENIM-------AVLEIRKDLDRAEREErleaLLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 152 IVVLDEPESNLD---FNNQARIIKLLqqlsREKNVTIILNTHFINHANSIADKCLLMKRKEYFF-GNKEVVLQEER---- 223
Cdd:TIGR04406 156 FILLDEPFAGVDpiaVGDIKKIIKHL----KERGIGVLITDHNVRETLDICDRAYIISDGKVLAeGTPAEIVANEKvrrv 231
|
....*..
gi 1235141840 224 -LGEYFN 229
Cdd:TIGR04406 232 yLGEQFR 238
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-187 |
3.26e-23 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 94.04 E-value: 3.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGrsptF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKA-RLAHVP 75
Cdd:cd03219 1 LEVRGLTKRFGG----LvalDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGedITGLPPhEIARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQ-----FSYSVLDFV----SFGRPLCGGILPSPGSKD--LEQSAQMLADLGVSYLESKNINQISGGELQMCYIAR 144
Cdd:cd03219 77 IGRTFQiprlfPELTVLENVmvaaQARTGSGLLLARARREEReaRERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIIL 187
Cdd:cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLL 198
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
2-207 |
3.43e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 93.33 E-value: 3.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFeniSFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHIQ 81
Cdd:cd03298 1 VRLDKIRFSYGEQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 ----FSY-SVLDFVSFGRplcggilpSPGSK----DLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:cd03298 78 ennlFAHlTVEQNVGLGL--------SPGLKltaeDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
19-201 |
3.90e-23 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 95.26 E-value: 3.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGR----KARLAHVPQARHIQFSYSVLD-FVS 91
Cdd:PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGepVPSRarhaRQRVGVVPQFDNLDPDFTVREnLLV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 92 FGRPLcggilpspGSKDLEQSAQMLADLGVSYLESK---NINQISGGELQMCYIARALVSEPDIVVLDEPESNLDfnNQA 168
Cdd:PRK13537 104 FGRYF--------GLSAAAARALVPPLLEFAKLENKadaKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD--PQA 173
|
170 180 190
....*....|....*....|....*....|....*.
gi 1235141840 169 RII---KLLQQLSREKnvTIILNTHFINHANSIADK 201
Cdd:PRK13537 174 RHLmweRLRSLLARGK--TILLTTHFMEEAERLCDR 207
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-205 |
4.08e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 93.92 E-value: 4.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFaFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--------IDGRKARL-- 71
Cdd:COG4161 3 IQLKNINC-FYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsqkPSEKAIRLlr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 ---AHVPQARHIQFSYSVLDFVsFGRPLcgGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVS 148
Cdd:COG4161 82 qkvGMVFQQYNLWPHLTVMENL-IEAPC--KVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG4161 159 EPQVLLFDEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYM 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-204 |
6.48e-23 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 95.28 E-value: 6.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARLAH-----VP 75
Cdd:PRK13536 42 IDLAGVSKSYGDK-AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPvPARARLARarigvVP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQFSYSVLD-FVSFGRPLcggilpspGSKDLEQSAQMLADLGVSYLESK---NINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13536 121 QFDNLDLEFTVREnLLVFGRYF--------GMSTREIEAVIPSLLEFARLESKadaRVSDLSGGMKRRLTLARALINDPQ 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQ-LSREKnvTIILNTHFINHANSIADK-CLL 204
Cdd:PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSlLARGK--TILLTTHFMEEAERLCDRlCVL 245
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-205 |
6.52e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 94.48 E-value: 6.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFK-GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK----------AR 70
Cdd:PRK13640 6 VEFKHVSFTYPdSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITltaktvwdirEK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LAHVPQARHIQF-SYSVLDFVSFG---RPLcggilpsPGSKDLEQSAQMLADLGV-SYLESKNINqISGGELQMCYIARA 145
Cdd:PRK13640 86 VGIVFQNPDNQFvGATVGDDVAFGlenRAV-------PRPEMIKIVRDVLADVGMlDYIDSEPAN-LSGGQKQRVAIAGI 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANsIADKCLLM 205
Cdd:PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVL 216
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-205 |
9.05e-23 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.52 E-value: 9.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTfENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTC-----HIGGIDGRK-ARLAHV 74
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAV-NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIllrgqHIEGLPGHQiARMGVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQF--SYSVLD--FVSFGR----PLCGGILPSPG-----SKDLEQSAQMLADLGVSYLESKNINQISGGELQMCY 141
Cdd:PRK11300 84 RTFQHVRLfrEMTVIEnlLVAQHQqlktGLFSGLLKTPAfrraeSEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
2-207 |
1.28e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 93.69 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSP----TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARLAHVPQ 76
Cdd:PRK13646 3 IRFDNVSYTYQKGTPyehqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITiTHKTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARH-----IQFSYSVLDFVSFGRPLCGGilPSPGSKDLEQ----SAQMLADLGVSY-LESKNINQISGGELQMCYIARAL 146
Cdd:PRK13646 83 VRKrigmvFQFPESQLFEDTVEREIIFG--PKNFKMNLDEvknyAHRLLMDLGFSRdVMSQSPFQMSGGQMRKIAIVSIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE 221
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-207 |
1.30e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 90.84 E-value: 1.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI------DGRKARLAHV 74
Cdd:cd03247 1 LSINNVSFSYPEQEqQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVpvsdleKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDFVsfGRPLcggilpspgskdleqsaqmladlgvsyleskninqiSGGELQMCYIARALVSEPDIVV 154
Cdd:cd03247 81 NQRPYL-FDTTLRNNL--GRRF------------------------------------SGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 155 LDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTHfinHANSI--ADKCLLMKR 207
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITH---HLTGIehMDKILFLEN 171
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-224 |
1.34e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 93.33 E-value: 1.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHI 80
Cdd:PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QF--------SYSVLDFVSFGrPLCGGILPSPGSKDLEQSAQMLadlGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:PRK13652 83 VFqnpddqifSPTVEQDIAFG-PINLGLDEETVAHRVSSALHML---GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEyFFGN---KEVVLQEERL 224
Cdd:PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR-IVAYgtvEEIFLQPDLL 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-207 |
2.44e-22 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 95.14 E-value: 2.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTF----------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLyQPLSGTCHIGG--IDGRKA 69
Cdd:COG4172 276 LEARDLKVWFPIKRGLFrrtvghvkavDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGqdLDGLSR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 RlAHVPQARHIQ------FS-----YSVLDFVsfGRPLcgGILPSPGSKD--LEQSAQMLADLGVS------YlesknIN 130
Cdd:COG4172 355 R-ALRPLRRRMQvvfqdpFGslsprMTVGQII--AEGL--RVHGPGLSAAerRARVAEALEEVGLDpaarhrY-----PH 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 131 QISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINH----ANSIADKCLLMK 206
Cdd:COG4172 425 EFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYL----FISHdlavVRALAHRVMVMK 500
|
.
gi 1235141840 207 R 207
Cdd:COG4172 501 D 501
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
13-198 |
2.45e-22 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 91.70 E-value: 2.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 13 GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrKARLAHVPQARHIQFSYSVLDFVSF 92
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG----EDISTLKPEIYRQQVSYCAQTPTLF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 93 GRPLCGG-ILPSPGSKDLEQSAQMLADLGVSYLE----SKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:PRK10247 94 GDTVYDNlIFPWQIRNQQPDPAIFLDDLERFALPdtilTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK 173
|
170 180 190
....*....|....*....|....*....|....
gi 1235141840 168 ARIIKLLQQLSREKNVTIILNTH---FINHANSI 198
Cdd:PRK10247 174 HNVNEIIHRYVREQNIAVLWVTHdkdEINHADKV 207
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-207 |
3.97e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 92.39 E-value: 3.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPtFE-----NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRK------ 68
Cdd:PRK13634 3 ITFQKVEHRYQYKTP-FErralyDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGErvITAGKknkklk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ---ARLAHVPQ-ARHIQFSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSY-LESKNINQISGGELQMCYIA 143
Cdd:PRK13634 82 plrKKVGIVFQfPEHQLFEETVEKDICFG-PMNFGV---SEEDAKQKAREMIELVGLPEeLLARSPFELSGGQMRRVAIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK 221
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-205 |
8.19e-22 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 92.17 E-value: 8.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDG--------RKA 69
Cdd:PRK11153 1 MIELKNISKVFPQGGRTIHalnNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsekelRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 RlahvpqaRHI-----QF----SYSVLDFVSFgrPLcggILPSPGSKDLEQSAQMLADL-GVSYLESKNINQISGGELQM 139
Cdd:PRK11153 81 R-------RQIgmifqHFnllsSRTVFDNVAL--PL---ELAGTPKAEIKARVTELLELvGLSDKADRYPAQLSGGQKQR 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 140 CYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-234 |
8.52e-22 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 91.04 E-value: 8.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGlyqPLSGTCHIGG--------IDG------ 66
Cdd:PRK13547 1 MLTADHLHVARRHRA-ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG---DLTGGGAPRGarvtgdvtLNGeplaai 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 67 ---RKARL-AHVPQARHIQFSYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYI 142
Cdd:PRK13547 77 dapRLARLrAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 143 ARAL---------VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFIN----HANSIAdkcLLMKRKE 209
Cdd:PRK13547 157 ARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNlaarHADRIA---MLADGAI 233
|
250 260
....*....|....*....|....*
gi 1235141840 210 YFFGNKEVVLQEERLGEYFNVPVKR 234
Cdd:PRK13547 234 VAHGAPADVLTPAHIARCYGFAVRL 258
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-207 |
1.23e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 90.95 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKG--RSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggiDGRKARLAHVPQAR 78
Cdd:PRK13650 4 IIEVKNLTFKYKEdqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII---DGDLLTEENVWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HI----------QF-SYSVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALV 147
Cdd:PRK13650 81 HKigmvfqnpdnQFvGATVEDDVAFGLENKG----IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHAnSIADKCLLMKR 207
Cdd:PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-205 |
1.32e-21 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 90.07 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFaFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-----------DGRKAR 70
Cdd:PRK11124 3 IQLNGINC-FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdfsktpsdkAIRELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 --LAHVPQARHIQFSYSVLDfvsfgrplcgGILPSP----G-SKD--LEQSAQMLADLGVSYLESKNINQISGGELQMCY 141
Cdd:PRK11124 82 rnVGMVFQQYNLWPHLTVQQ----------NLIEAPcrvlGlSKDqaLARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYM 214
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-190 |
1.40e-21 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 89.16 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHVPQARH- 79
Cdd:PRK13539 2 MLEGEDLA-CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK---LDGGDIDDPDVAEACHy 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 ------IQFSYSVLDFVSFGRPLCGGILPSPgskdleqsAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:PRK13539 78 lghrnaMKPALTVAENLEFWAAFLGGEELDI--------AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQlSREKNVTIILNTH 190
Cdd:PRK13539 150 ILDEPTAALDAAAVALFAELIRA-HLAQGGIVIAATH 185
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-204 |
2.74e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 88.87 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFeniSFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHI 80
Cdd:PRK10771 1 MLKLTDITWLYHHLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 Q----FSY-SVLDFVSFGRplcggilpSPGSK-DLEQSAQ---MLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK10771 78 QennlFSHlTVAQNIGLGL--------NPGLKlNAAQREKlhaIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLL 204
Cdd:PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-201 |
3.06e-21 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 92.50 E-value: 3.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG-----IDGRKAR--LAHV 74
Cdd:TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGfslkdIDRHTLRqfINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIqFSYSVLDfvsfgrPLCGGILPSPGSKDLEQS---AQMLAD-----LGVSYLESKNINQISGGELQMCYIARAL 146
Cdd:TIGR01193 554 PQEPYI-FSGSILE------NLLLGAKENVSQDEIWAAceiAEIKDDienmpLGYQTELSEEGSSISGGQKQRIALARAL 626
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLsreKNVTIIlnthFINHANSIADK 201
Cdd:TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTII----FVAHRLSVAKQ 674
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-198 |
3.76e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 88.44 E-value: 3.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGR-SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR-------KARLAH 73
Cdd:cd03251 1 VEFKNVTFRYPGDgPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRdytlaslRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQ-----------------MLADLGVsyleskninQISGGE 136
Cdd:cd03251 81 VSQDVFL-FNDTVAENIAYGRP-------GATREEVEEAARaanahefimelpegydtVIGERGV---------KLSGGQ 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 137 LQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIahrLST--IENADRI 206
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-205 |
3.87e-21 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 88.61 E-value: 3.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-------DGRKARL-- 71
Cdd:PRK09493 1 MIEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLkvndpkvDERLIRQea 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQFSYSVLDFVSFGRPLCGGIlpspGSKDLEQSA-QMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGA----SKEEAEKQArELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASRLIFI 209
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-207 |
4.66e-21 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 88.26 E-value: 4.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNL--TFAFKGRS----PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGT---CHIGG-IDgrkar 70
Cdd:COG4778 4 LLEVENLskTFTLHLQGgkrlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSilvRHDGGwVD----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LAHVPQARHIQFSYSVLDFVS-FGRplcggILPSPGSKDLeqSAQMLADLGVSYLESK----------NINQ-------- 131
Cdd:COG4778 79 LAQASPREILALRRRTIGYVSqFLR-----VIPRVSALDV--VAEPLLERGVDREEARararellarlNLPErlwdlppa 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 132 -ISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG4778 152 tFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARG-TAIIGIFHDEEVREAVADRVVDVTP 227
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
20-201 |
4.80e-21 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 90.47 E-value: 4.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrkARLAHVPQA-RHIQF---SY------SVLDF 89
Cdd:PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE-----KRMNDVPPAeRGVGMvfqSYalyphlSVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 90 VSFGRPLCGGilpspGSKDLEQSAQMLAD-LGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLD--FNN 166
Cdd:PRK11000 96 MSFGLKLAGA-----KKEEINQRVNQVAEvLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDaaLRV 170
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 167 QAR--IIKLLQQLSReknvTIILNTHFINHANSIADK 201
Cdd:PRK11000 171 QMRieISRLHKRLGR----TMIYVTHDQVEAMTLADK 203
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-205 |
5.12e-21 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 88.56 E-value: 5.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQpLSGTCHIGG---IDGRKARLAHVPQA- 77
Cdd:COG1117 12 IEVRNLNVYY-GDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGeilLDGEDIYDPDVDVVe 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 --RHI----Q----FSYSVLDFVSFGRPLCGgiLPSPGSKD------LEQSAQ------MLADLGVSyleskninqISGG 135
Cdd:COG1117 90 lrRRVgmvfQkpnpFPKSIYDNVAYGLRLHG--IKSKSELDeiveesLRKAALwdevkdRLKKSALG---------LSGG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 136 ELQ-MCyIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTHFINHANSIADKCLLM 205
Cdd:COG1117 159 QQQrLC-IARALAVEPEVLLMDEPTSALDPISTAKIEELILELK--KDYTIVIVTHNMQQAARVSDYTAFF 226
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-186 |
6.14e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 87.93 E-value: 6.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSP-TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-------GRKARLAH 73
Cdd:cd03252 1 ITFEHVRFRYKPDGPvILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDlaladpaWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQArHIQFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQMlAD---------LGVSYLESKNINQISGGELQMCYIAR 144
Cdd:cd03252 81 VLQE-NVLFNRSIRDNIALADP-------GMSMERVIEAAKL-AGahdfiselpEGYDTIVGEQGAGLSGGQRQRIAIAR 151
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIII 193
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-210 |
6.47e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 90.28 E-value: 6.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHV-PQARH 79
Cdd:PRK11607 19 LLEIRNLTKSFDGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD-----LSHVpPYQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQF---SYSVLDFVSFGRPLCGGI----LPSPGSKDleQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDI 152
Cdd:PRK11607 93 INMmfqSYALFPHMTVEQNIAFGLkqdkLPKAEIAS--RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 153 VVLDEPESNLDFNNQARI-IKLLQQLSReKNVTIILNTHFINHANSIADKCLLMKRKEY 210
Cdd:PRK11607 171 LLLDEPMGALDKKLRDRMqLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-211 |
7.29e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 88.65 E-value: 7.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSP-TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCH-----IGGIDGRKAR--LA 72
Cdd:PRK13648 7 IIVFKNVSFQYQSDASfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFynnqaITDDNFEKLRkhIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSYSVLDF-VSFGrpLCGGILPSpgSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13648 87 IVFQNPDNQFVGSIVKYdVAFG--LENHAVPY--DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSiADKCLLMKRKEYF 211
Cdd:PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY 221
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-198 |
8.08e-21 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 87.53 E-value: 8.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGR--SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLAH---- 73
Cdd:cd03248 12 VKFQNVTFAYPTRpdTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGkpISQYEHKYLHskvs 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 -VPQaRHIQFSYSVLDFVSFGRPLCggilPSPGSKDLEQSAQmlADLGVSYLES-------KNINQISGGELQMCYIARA 145
Cdd:cd03248 92 lVGQ-EPVLFARSLQDNIAYGLQSC----SFECVKEAAQKAH--AHSFISELASgydtevgEKGSQLSGGQKQRVAIARA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIahrLST--VERADQI 218
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-201 |
1.14e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.84 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 4 VNNLTFAFK--GRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG------IDGRKARLAHVP 75
Cdd:TIGR01257 931 VKNLVKIFEpsGR-PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGkdietnLDAVRQSLGMCP 1009
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQFSYSVLDFVSFGRPLCGgilPSPGSKDLEQSAqMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVL 155
Cdd:TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEA-MLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1235141840 156 DEPESNLDFNNQARIIKLLqqLSREKNVTIILNTHFINHANSIADK 201
Cdd:TIGR01257 1086 DEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDR 1129
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-190 |
1.14e-20 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 86.94 E-value: 1.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQP---LSGTCHIGGIDGRKA----RLAHVPQARHIQFSYSVLDFVSF 92
Cdd:cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRKPDqfqkCVAYVRQDDILLPGLTVRETLTY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 93 GrplcgGILPSPGSKDLEQSAQM-----LADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:cd03234 105 T-----AILRLPRKSSDAIRKKRvedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
170 180
....*....|....*....|...
gi 1235141840 168 ARIIKLLQQLSReKNVTIILNTH 190
Cdd:cd03234 180 LNLVSTLSQLAR-RNRIVILTIH 201
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-190 |
1.31e-20 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 90.25 E-value: 1.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGgidgRKARLAHVPQarhi 80
Cdd:COG4178 362 ALALEDLTLRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARP----AGARVLFLPQ---- 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 qfsysvldfvsfgRP----------LCggiLPSPGSK-DLEQSAQMLADLGVSYL-----ESKNINQI-SGGELQMCYIA 143
Cdd:COG4178 434 -------------RPylplgtlreaLL---YPATAEAfSDAELREALEAVGLGHLaerldEEADWDQVlSLGEQQRLAFA 497
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQlsREKNVTIILNTH 190
Cdd:COG4178 498 RLLLHKPDWLFLDEATSALDEENEAALYQLLRE--ELPGTTVISVGH 542
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-165 |
1.42e-20 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 90.38 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQAR-HI 80
Cdd:TIGR03719 323 IEAENLTKAFGDK-LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI----GETVKLAYVDQSRdAL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSYSVLDFVSFG-------------RPLCGGIlpspGSKDLEQsaqmladlgvsyleSKNINQISGGELQMCYIARALV 147
Cdd:TIGR03719 398 DPNKTVWEEISGGldiiklgkreipsRAYVGRF----NFKGSDQ--------------QKKVGQLSGGERNRVHLAKTLK 459
|
170
....*....|....*...
gi 1235141840 148 SEPDIVVLDEPESNLDFN 165
Cdd:TIGR03719 460 SGGNVLLLDEPTNDLDVE 477
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-224 |
1.45e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 87.74 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARLAHVPQARH 79
Cdd:PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDtGDFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSYSVLDFV--------SFG-RPLCggiLPSPGSKDLEQSAqmLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK13644 81 IVFQNPETQFVgrtveedlAFGpENLC---LPPIEIRKRVDRA--LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANsIADKCLLMKR-KEYFFGNKEVVLQEERL 224
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEELH-DADRIIVMDRgKIVLEGEPENVLSDVSL 228
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-199 |
1.57e-20 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 86.82 E-value: 1.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS--PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLA 72
Cdd:cd03249 1 IEFKNVSFRYPSRPdvPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlnlrwlrSQIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIqFSYSVLDFVSFGRPlcggilpsPGSKDLEQSAQMLADL---------GVSYLESKNINQISGGELQMCYIA 143
Cdd:cd03249 81 LVSQEPVL-FDGTIAENIRYGKP--------DATDEEVEEAAKKANIhdfimslpdGYDTLVGERGSQLSGGQKQRIAIA 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSIA 199
Cdd:cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIahrLST--IRNADLIA 208
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
21-234 |
1.64e-20 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 87.30 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 21 ISFSLPEGEILCILGPNGVGKTTLLKTITGLYqPLSGTCHIGGIDGRKARLAHvpQARH----IQ-----FSYSVLDFVS 91
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAE--LARHraylSQqqtppFAMPVFQYLT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 92 FGRPlcGGILPSPGSKDLEQSAQMLAdlgvsyLESK---NINQISGGELQMCYIARALVS-EPDI------VVLDEPESN 161
Cdd:PRK03695 92 LHQP--DKTRTEAVASALNEVAEALG------LDDKlgrSVNQLSGGEWQRVRLAAVVLQvWPDInpagqlLLLDEPMNS 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 162 LDFNNQARIIKLLQQLSReKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVVLQEERLGEYFNVPVKR 234
Cdd:PRK03695 164 LDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQgKLLASGRRDEVLTPENLAQVFGVNFRR 236
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
19-205 |
2.27e-20 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 87.05 E-value: 2.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-GRKARLAHVPQARHIQFSYSvlDfvSFG---- 93
Cdd:PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPlAKLNRAQRKAFRRDIQMVFQ--D--SISavnp 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 94 RPLCGGILPSP-----GSKDLEQSAQMLA-----DLGVSYLeSKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLD 163
Cdd:PRK10419 105 RKTVREIIREPlrhllSLDKAERLARASEmlravDLDDSVL-DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1235141840 164 FNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-207 |
2.37e-20 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 89.78 E-value: 2.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS--PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKarLAHVPQARH 79
Cdd:TIGR00958 479 IEFQDVSFSYPNRPdvPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ--YDHHYLHRQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQ--------FSYSVLDFVSFGRPLCggilpsPGSKDLEQSAQMLADLGVSYLES---KNI----NQISGGELQMCYIAR 144
Cdd:TIGR00958 557 VAlvgqepvlFSGSVRENIAYGLTDT------PDEEIMAAAKAANAHDFIMEFPNgydTEVgekgSQLSGGQKQRIAIAR 630
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 145 ALVSEPDIVVLDEPESNLDfnnqARIIKLLQQLSREKNVTIILNTHFINHANSiADKCLLMKR 207
Cdd:TIGR00958 631 ALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKK 688
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-190 |
2.48e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 89.50 E-value: 2.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-------GRKARLAH 73
Cdd:PRK11160 339 LTLNNVSFTYPDQPqPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPiadyseaALRQAISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVsfgrplcggILPSPGSKDlEQSAQMLADLGVSYL--ESKNIN--------QISGGELQMCYIA 143
Cdd:PRK11160 419 VSQRVHL-FSATLRDNL---------LLAAPNASD-EALIEVLQQVGLEKLleDDKGLNawlgeggrQLSGGEQRRLGIA 487
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:PRK11160 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITH 532
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-190 |
3.17e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 85.70 E-value: 3.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVP----- 75
Cdd:PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflrrq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 -----QARHIQFSYSVLDFVSFgrPLcggILPSPGSKDLEQSAQMLADlGVSYLE-SKNIN-QISGGELQMCYIARALVS 148
Cdd:PRK10908 81 igmifQDHHLLMDRTVYDNVAI--PL---IIAGASGDDIRRRVSAALD-KVGLLDkAKNFPiQLSGGEQQRVGIARAVVN 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTH 190
Cdd:PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATH 195
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-207 |
3.42e-20 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 88.93 E-value: 3.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkgrsPTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHVPQA 77
Cdd:COG3845 5 ALELRGITKRF----GGVvanDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEIL---IDGKPVRIRSPRDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 R-------HIQFS----YSVLDFVSFGR-PLCGGILpspgskDLEQSAQMLADLGVSY-----LESKnINQISGGELQMC 140
Cdd:COG3845 78 IalgigmvHQHFMlvpnLTVAENIVLGLePTKGGRL------DRKAARARIRELSERYgldvdPDAK-VEDLSVGEQQRV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 141 YIARALVSEPDIVVLDEPESNL-----DfnnqaRIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG3845 151 EILKALYRGARILILDEPTAVLtpqeaD-----ELFEILRRL-AAEGKSIIFITHKLREVMAIADRVTVLRR 216
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-205 |
5.41e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 86.29 E-value: 5.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKG-----RSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKA------ 69
Cdd:PRK13633 4 MIKCKNVSYKYESneestEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEenlwdi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 --RLAHVPQARHIQFSYSVLDF-VSFGrPLCGGILPSPGSKDLEQSaqmLADLGVSYLESKNINQISGGELQMCYIARAL 146
Cdd:PRK13633 84 rnKAGMVFQNPDNQIVATIVEEdVAFG-PENLGIPPEEIRERVDES---LKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSiADKCLLM 205
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVM 217
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-198 |
6.62e-20 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 88.23 E-value: 6.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGR-------KARLAH 73
Cdd:TIGR02203 331 VEFRNVTFRYPGRDrPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAdytlaslRRQVAL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcGGIlpspGSKDLEQSAQML--------ADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:TIGR02203 411 VSQDVVL-FNDTIANNIAYGRT--EQA----DRAEIERALAAAyaqdfvdkLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIahrLST--IEKADRI 537
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-228 |
6.74e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 85.08 E-value: 6.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKARL--A 72
Cdd:COG1137 3 TLEAENLVKSYGKR-TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDithlpmHKRARLgiG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIqFS--------YSVLDFvsfgrplcggiLPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIAR 144
Cdd:COG1137 82 YLPQEASI-FRkltvedniLAVLEL-----------RKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKEYFF-GNKEVVLQEER 223
Cdd:COG1137 150 ALATNPKFILLDEPFAGVDPIAVADIQKIIRHL-KERGIGVLITDHNVRETLGICDRAYIISEGKVLAeGTPEEILNNPL 228
|
250
....*....|
gi 1235141840 224 -----LGEYF 228
Cdd:COG1137 229 vrkvyLGEDF 238
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-194 |
1.09e-19 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 88.08 E-value: 1.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAF-KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidgrKARLAHVPQARHI 80
Cdd:TIGR00957 637 ITVHNATFTWaRDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM------KGSVAYVPQQAWI 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QfSYSVLDFVSFGRPlcggiLPSPGSKDLEQSAQMLADLGV------SYLESKNINqISGGELQMCYIARALVSEPDIVV 154
Cdd:TIGR00957 711 Q-NDSLRENILFGKA-----LNEKYYQQVLEACALLPDLEIlpsgdrTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYL 783
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1235141840 155 LDEPESNLDFNNQARII-KLLQQLSREKNVTIILNTHFINH 194
Cdd:TIGR00957 784 FDDPLSAVDAHVGKHIFeHVIGPEGVLKNKTRILVTHGISY 824
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-187 |
2.05e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 82.48 E-value: 2.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTfafkgRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--------IDGRKARLAHV 74
Cdd:cd03215 6 EVRGLS-----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGkpvtrrspRDAIRAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQfsysvldfvsfgrplcgGILPspgskdleqsaqmlaDLGVsyleSKNI---NQISGGELQMCYIARALVSEPD 151
Cdd:cd03215 81 PEDRKRE-----------------GLVL---------------DLSV----AENIalsSLLSGGNQQKVVLARWLARDPR 124
|
170 180 190
....*....|....*....|....*....|....*.
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIIL 187
Cdd:cd03215 125 VLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLL 159
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-165 |
2.92e-19 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 86.33 E-value: 2.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQAR-HI 80
Cdd:PRK11819 325 IEAENLSKSFGDRL-LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI----GETVKLAYVDQSRdAL 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSYSV-------LDFVSFG------RPLCGgilpSPGSKDLEQsaqmladlgvsyleSKNINQISGGELQMCYIARALV 147
Cdd:PRK11819 400 DPNKTVweeisggLDIIKVGnreipsRAYVG----RFNFKGGDQ--------------QKKVGVLSGGERNRLHLAKTLK 461
|
170
....*....|....*...
gi 1235141840 148 SEPDIVVLDEPESNLDFN 165
Cdd:PRK11819 462 QGGNVLLLDEPTNDLDVE 479
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-190 |
3.05e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.60 E-value: 3.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFE-----NISFSLPEGEILCILGPNGVGKTTLLKTITGL--YQPLSGTCHIGGIDGR----KAR 70
Cdd:cd03213 4 LSFRNLTVTVKSSPSKSGkqllkNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGRPLDkrsfRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LAHVPQARHIQFSYSVLDFVSFgrplcggilpspgskdleqsaqmladlgvsyleSKNINQISGGELQMCYIARALVSEP 150
Cdd:cd03213 84 IGYVPQDDILHPTLTVRETLMF---------------------------------AAKLRGLSGGERKRVSIALELVSNP 130
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIILNTH 190
Cdd:cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIH 169
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-200 |
3.46e-19 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 84.05 E-value: 3.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAfKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG-----------IDGRKa 69
Cdd:PRK11831 7 LVDMRGVSFT-RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGenipamsrsrlYTVRK- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 RLAHVPQARHIQFSYSVLDFVSFgrPLCGGI-LPSPgskdLEQSAQMLADLGVSYLESKNI--NQISGGELQMCYIARAL 146
Cdd:PRK11831 85 RMSMLFQSGALFTDMNVFDNVAY--PLREHTqLPAP----LLHSTVMMKLEAVGLRGAAKLmpSELSGGMARRAALARAI 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIAD 200
Cdd:PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD 212
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-206 |
4.87e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 85.49 E-value: 4.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGrSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIdgRKARL----AH--- 73
Cdd:PRK15439 11 LLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN--PCARLtpakAHqlg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 ---VPQARHIQFSYSVLDFVSFGrplcggiLPSPgSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK15439 88 iylVPQEPLLFPNLSVKENILFG-------LPKR-QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK15439 160 RILILDEPTASLTPAETERLFSRIREL-LAQGVGIVFISHKLPEIRQLADRISVMR 214
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-198 |
7.30e-19 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 85.40 E-value: 7.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVpqaRH-- 79
Cdd:PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL---RRni 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 ---IQ----FSYSVLDFVSFGRplcggilpsPGSKDLEQSAQMLADLGVSYLESK------NI----NQISGGELQMCYI 142
Cdd:PRK13657 412 avvFQdaglFNRSIEDNIRVGR---------PDATDEEMRAAAERAQAHDFIERKpdgydtVVgergRQLSGGERQRLAI 482
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:PRK13657 483 ARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIahrLST--VRNADRI 539
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-209 |
7.96e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 83.22 E-value: 7.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPT--FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG-------IDGRKARL 71
Cdd:PRK13642 4 ILEVENLVFKYEKESDVnqLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGelltaenVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQF-SYSVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK13642 84 GMVFQNPDNQFvGATVEDDVAFGMENQG----IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSiADKCLLMKRKE 209
Cdd:PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGE 217
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-207 |
8.23e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 83.24 E-value: 8.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSP----TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI----DGRKARLA 72
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPfasrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIvvssTSKQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSY--------SVLDFVSFGrPLCGGILPSPGSKDLEQSAQMLAdLGVSYLEsKNINQISGGELQMCYIAR 144
Cdd:PRK13643 81 PVRKKVGVVFQFpesqlfeeTVLKDVAFG-PQNFGIPKEKAEKIAAEKLEMVG-LADEFWE-KSPFELSGGQMRRVAIAG 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLEK 219
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
19-205 |
9.33e-19 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 82.13 E-value: 9.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggiDGRKarLAHVPQARHIQF-SYSVLDFVSFGRPLC 97
Cdd:TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL---EGKQ--ITEPGPDRMVVFqNYSLLPWLTVRENIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 98 ---GGILPS-PGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKL 173
Cdd:TIGR01184 77 lavDRVLPDlSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170 180 190
....*....|....*....|....*....|..
gi 1235141840 174 LQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-200 |
1.28e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 82.27 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQpLSGTCHIGG---IDGRKA-RLAHVPQA 77
Cdd:PRK14247 4 IEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE-LYPEARVSGevyLDGQDIfKMDVIELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSY---------SVLDFVSFGRPLcGGILPSpgSKDLEQSAQMLADLGVSYLESKN-----INQISGGELQMCYIA 143
Cdd:PRK14247 82 RRVQMVFqipnpipnlSIFENVALGLKL-NRLVKS--KKELQERVRWALEKAQLWDEVKDrldapAGKLSGGQQQRLCIA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsrEKNVTIILNTHFINHANSIAD 200
Cdd:PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVLVTHFPQQAARISD 213
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
2-206 |
1.40e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 82.57 E-value: 1.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPT----FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----GRKA--- 69
Cdd:PRK13641 3 IKFENVDYIYSPGTPMekkgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHitpetGNKNlkk 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 70 ---RLAHVPQARHIQ-FSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGVSY-LESKNINQISGGELQMCYIAR 144
Cdd:PRK13641 83 lrkKVSLVFQFPEAQlFENTVLKDVEFG-PKNFGF---SEDEAKEKALKWLKKVGLSEdLISKSPFELSGGQMRRVAIAG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVTHNMDDVAEYADDVLVLE 219
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-232 |
1.41e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 82.39 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQpLSGTCHIGG--------IDGRKARLAH 73
Cdd:PRK14258 8 IKVNNLSFYYDTQK-ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGrveffnqnIYERRVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VpqARHIQ--------FSYSVLDFVSFGRPLCGGiLPSPGSKDLEQSAQMLADL--GVSYLESKNINQISGGELQMCYIA 143
Cdd:PRK14258 86 L--RRQVSmvhpkpnlFPMSVYDNVAYGVKIVGW-RPKLEIDDIVESALKDADLwdEIKHKIHKSALDLSGGQQQRLCIA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADkcllmkRKEYFFGNKEVVLQEER 223
Cdd:PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD------FTAFFKGNENRIGQLVE 236
|
250
....*....|..
gi 1235141840 224 LG---EYFNVPV 232
Cdd:PRK14258 237 FGltkKIFNSPH 248
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-237 |
1.49e-18 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 81.85 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKAR--LA 72
Cdd:PRK11614 5 MLSFDKVS-AHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDitdwqtAKIMReaVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSYSVLDFVSFgrplcGGILPSpgSKDLEQSAQMLADLGVSYLE--SKNINQISGGELQMCYIARALVSEP 150
Cdd:PRK11614 84 IVPEGRRVFSRMTVEENLAM-----GGFFAE--RDQFQERIKWVYELFPRLHErrIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADkcllmkrKEYFFGNKEVVLQEERLGEYFNV 230
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLAD-------RGYVLENGHVVLEDTGDALLANE 228
|
....*..
gi 1235141840 231 PVKRCYF 237
Cdd:PRK11614 229 AVRSAYL 235
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-190 |
1.53e-18 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 79.89 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQarhiq 81
Cdd:cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM----PEGEDLLFLPQ----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 fsysvldfvsfgRPLCggilpSPGSkdleqsaqmLADLgVSYLESKNinqISGGELQMCYIARALVSEPDIVVLDEPESN 161
Cdd:cd03223 72 ------------RPYL-----PLGT---------LREQ-LIYPWDDV---LSGGEQQRLAFARLLLHKPKFVFLDEATSA 121
|
170 180
....*....|....*....|....*....
gi 1235141840 162 LDFNNQARIIKLLQQLSreknVTIILNTH 190
Cdd:cd03223 122 LDEESEDRLYQLLKELG----ITVISVGH 146
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1-205 |
1.62e-18 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 83.22 E-value: 1.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLT--FAFKGRSPTF----------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK 68
Cdd:PRK15079 8 LLEVADLKvhFDIKDGKQWFwqppktlkavDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ARLAHVPQARH-IQfsysvldfVSFGRPLC--------GGILPSP-------GSKD--LEQSAQMLADLGvsyLESKNIN 130
Cdd:PRK15079 88 MKDDEWRAVRSdIQ--------MIFQDPLAslnprmtiGEIIAEPlrtyhpkLSRQevKDRVKAMMLKVG---LLPNLIN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 131 ----QISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINHANS----IADKC 202
Cdd:PRK15079 157 ryphEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLI----FIAHDLAvvkhISDRV 232
|
...
gi 1235141840 203 LLM 205
Cdd:PRK15079 233 LVM 235
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-201 |
1.72e-18 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 84.07 E-value: 1.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 27 EGEILCILGPNGVGKTTLLKTITGLYQPLSGTchiggIDGrKARLAHVPQARHIQFSYSVLDFvsfgrplcggiLPSPGS 106
Cdd:COG1245 365 EGEVLGIVGPNGIGKTTFAKILAGVLKPDEGE-----VDE-DLKISYKPQYISPDYDGTVEEF-----------LRSANT 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 107 KDLEQS---AQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNV 183
Cdd:COG1245 428 DDFGSSyykTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGK 507
|
170
....*....|....*...
gi 1235141840 184 TIILNTHFINHANSIADK 201
Cdd:COG1245 508 TAMVVDHDIYLIDYISDR 525
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
21-205 |
5.32e-18 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 81.55 E-value: 5.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 21 ISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARH-----IQFSYSVLDfvsfGRP 95
Cdd:PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQkiqivFQNPYGSLN----PRK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 96 LCGGILPSP--------GSKDLEQSAQMLADLGvsyLESKNINQ----ISGGELQMCYIARALVSEPDIVVLDEPESNLD 163
Cdd:PRK11308 110 KVGQILEEPllintslsAAERREKALAMMAKVG---LRPEHYDRyphmFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1235141840 164 FNNQARIIKLLQQLSREKNVTIIlnthFINHANS----IADKCLLM 205
Cdd:PRK11308 187 VSVQAQVLNLMMDLQQELGLSYV----FISHDLSvvehIADEVMVM 228
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
13-209 |
9.33e-18 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 81.62 E-value: 9.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 13 GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID-----------GRKARLAHVPQARHIQ 81
Cdd:PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDiakisdaelreVRRKKIAMVFQSFALM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESN 161
Cdd:PRK10070 119 PHMTVLDNTAFGMELAG----INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1235141840 162 LDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-190 |
1.47e-17 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 78.31 E-value: 1.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKAR---------L 71
Cdd:PRK13538 1 MLEARNLACERDER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRdeyhqdllyL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQarhIQFSYSVLDFVSFGRPLCGGIlpspgskDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13538 80 GHQPG---IKTELTALENLRFYQRLHGPG-------DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTH 190
Cdd:PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHA-EQGGMVILTTH 187
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-209 |
1.63e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 80.28 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSP----TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI----DGRKARLA 72
Cdd:PRK13631 21 ILRVKNLYCVFDEKQEnelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIyigdKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQ--------------------FSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQMLADLGV--SYLEsKNIN 130
Cdd:PRK13631 101 TNPYSKKIKnfkelrrrvsmvfqfpeyqlFKDTIEKDIMFG-PVALGV---KKSEAKKLAKFYLNKMGLddSYLE-RSPF 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 131 QISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQlSREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-203 |
1.75e-17 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 78.99 E-value: 1.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 24 SLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVPQARHIQFSYSVLDFVSfgrplcgGILPS 103
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-----VSYKPQYIKADYEGTVRDLLS-------SITKD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 104 PGSKDLEQSaQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNV 183
Cdd:cd03237 89 FYTHPYFKT-EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEK 167
|
170 180
....*....|....*....|
gi 1235141840 184 TIILNTHFINHANSIADKCL 203
Cdd:cd03237 168 TAFVVEHDIIMIDYLADRLI 187
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-187 |
2.78e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 80.45 E-value: 2.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTfafkgRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--------IDGRKARLAHV 74
Cdd:COG1129 258 EVEGLS-----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpvrirspRDAIRAGIAYV 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQ-----------FSYSVLDfvSFGRplcGGILPSpgSKDLEQSAQMLADLGV--SYLESKnINQISGGELQMCY 141
Cdd:COG1129 333 PEDRKGEglvldlsirenITLASLD--RLSR---GGLLDR--RRERALAEEYIKRLRIktPSPEQP-VGNLSGGNQQKVV 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIIL 187
Cdd:COG1129 405 LAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIV 449
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-206 |
3.05e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.60 E-value: 3.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrKARLAHVPQARH- 79
Cdd:PRK09700 5 YISMAGIGKSFGPVH-ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN--YNKLDHKLAAQLg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSY---SVLDFVSFGRPLCGGILPSPG---------SKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALV 147
Cdd:PRK09700 82 IGIIYqelSVIDELTVLENLYIGRHLTKKvcgvniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGTAIVYISHKLAEIRRICDRYTVMK 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-238 |
3.35e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 80.23 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGL--YQPLSGT-------CHIGGIDGRKARLA 72
Cdd:TIGR03269 1 IEVKNLTKKFDGKE-VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRiiyhvalCEKCGYVERPSKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSYSVLDFVSFGRPLCGGI---------------------------LPS---PGSKDLEQSAQMLADLGVS 122
Cdd:TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIrkriaimlqrtfalygddtvldnvleaLEEigyEGKEAVGRAVDLIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 123 YLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKC 202
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
|
250 260 270
....*....|....*....|....*....|....*..
gi 1235141840 203 LLMKRKEYF-FGNKEVVLqeERLGEYFNVPVKRCYFE 238
Cdd:TIGR03269 240 IWLENGEIKeEGTPDEVV--AVFMEGVSEVEKECEVE 274
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-200 |
3.57e-17 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 80.38 E-value: 3.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGlYQPLSgtchiggiDGR--------KARLA 72
Cdd:PRK11147 3 LISIHGAWLSF-SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG-EVLLD--------DGRiiyeqdliVARLQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPqARHIQfsYSVLDFVSFGRPLCGGILPS-----------PGSKDLEQSAQMLADL---GVSYLESKnINQI------ 132
Cdd:PRK11147 73 QDP-PRNVE--GTVYDFVAEGIEEQAEYLKRyhdishlvetdPSEKNLNELAKLQEQLdhhNLWQLENR-INEVlaqlgl 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 133 ---------SGGELQMCYIARALVSEPDIVVLDEPESNLDFNNqariIKLLQQLSREKNVTIILNTH---FI-NHANSIA 199
Cdd:PRK11147 149 dpdaalsslSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET----IEWLEGFLKTFQGSIIFISHdrsFIrNMATRIV 224
|
.
gi 1235141840 200 D 200
Cdd:PRK11147 225 D 225
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
6-228 |
3.57e-17 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 78.01 E-value: 3.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 6 NLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKAR--LAHVPQA 77
Cdd:PRK10895 8 NLAKAYKGRR-VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDisllplHARARrgIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSYSVLDFVSfgrplcgGILPSPGSKDLEQSA----QMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:PRK10895 87 ASIFRRLSVYDNLM-------AVLQIRDDLSAEQREdranELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKEYF-FGNKEVVLQEER-----LGEY 227
Cdd:PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIaHGTPTEILQDEHvkrvyLGED 238
|
.
gi 1235141840 228 F 228
Cdd:PRK10895 239 F 239
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-206 |
4.62e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 78.59 E-value: 4.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPT----FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHI---------------- 61
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTelkaLDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 62 --GGIDGRKARLAHVPQARHIQ--------------FSYSVLDFVSFGrPLCGGIlpsPGSKDLEQSAQM--LADLGVSY 123
Cdd:PRK13651 83 vlEKLVIQKTRFKKIKKIKEIRrrvgvvfqfaeyqlFEQTIEKDIIFG-PVSMGV---SKEEAKKRAAKYieLVGLDESY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 124 LEsKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCL 203
Cdd:PRK13651 159 LQ-RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRTI 236
|
...
gi 1235141840 204 LMK 206
Cdd:PRK13651 237 FFK 239
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-195 |
5.87e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 79.78 E-value: 5.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFkGrspTF---ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHI-------GGIDGRK--- 68
Cdd:NF033858 267 IEARGLTMRF-G---DFtavDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLfgqpvdaGDIATRRrvg 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ---------------------ARLAHVPQAR---HIQfsYSVLDFvsfgrplcggilpspgskDLEQSAQMLAD---LGv 121
Cdd:NF033858 343 ymsqafslygeltvrqnlelhARLFHLPAAEiaaRVA--EMLERF------------------DLADVADALPDslpLG- 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 122 sylesknINQisggELQMcyiARALVSEPDIVVLDEPESNLDfnNQAR--IIKLLQQLSREKNVTIILNTHFINHA 195
Cdd:NF033858 402 -------IRQ----RLSL---AVAVIHKPELLILDEPTSGVD--PVARdmFWRLLIELSREDGVTIFISTHFMNEA 461
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-225 |
7.26e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 76.41 E-value: 7.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGL--YQPLSGTCHIGGIDgrkarLAHVP---Q 76
Cdd:cd03217 1 LEIKDLHVSVGGK-EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGED-----ITDLPpeeR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARH-IqfsysvldFVSFGRPLcggilPSPGSKdleqSAQMLADLGVSYleskninqiSGGELQMCYIARALVSEPDIVVL 155
Cdd:cd03217 75 ARLgI--------FLAFQYPP-----EIPGVK----NADFLRYVNEGF---------SGGEKKRNEILQLLLLEPDLAIL 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 156 DEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSI-ADKCLLMKR----KEyffGNKEVVLQEERLG 225
Cdd:cd03217 129 DEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDgrivKS---GDKELALEIEKKG 199
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-201 |
8.61e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 79.08 E-value: 8.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 27 EGEILCILGPNGVGKTTLLKTITGLYQPLSGTchiggIDgRKARLAHVPQARHIQFSYSVLDFVSfgrplcgGILPSPGS 106
Cdd:PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-----VD-PELKISYKPQYIKPDYDGTVEDLLR-------SITDDLGS 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 107 KDLEQsaQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:PRK13409 431 SYYKS--EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATAL 508
|
170
....*....|....*
gi 1235141840 187 LNTHFINHANSIADK 201
Cdd:PRK13409 509 VVDHDIYMIDYISDR 523
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
10-190 |
1.06e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.80 E-value: 1.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 10 AFKGRSPTF------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHVPQARH--IQ 81
Cdd:PRK11288 6 SFDGIGKTFpgvkalDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL---IDGQEMRFASTTAALAagVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFV---SFGRPLCGGILPSPG----SKDL-EQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIV 153
Cdd:PRK11288 83 IIYQELHLVpemTVAENLYLGQLPHKGgivnRRLLnYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 154 VLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTH 190
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIREL-RAEGRVILYVSH 198
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-224 |
4.15e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.43 E-value: 4.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKgRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQ-PLSGTCHI---GGIDGRKARLAHVPQ 76
Cdd:PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgDKSAGSHIellGRTVQREGRLARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQFSYSVLDFVSFGR------PLCGGILPSP--------GSKDLEQSA-QMLADLGVSYLESKNINQISGGELQMCY 141
Cdd:PRK09984 83 KSRANTGYIFQQFNLVNRlsvlenVLIGALGSTPfwrtcfswFTREQKQRAlQALTRVGMVHFAHQRVSTLSGGQQQRVA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKEYFFGNKEVVLQE 221
Cdd:PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN 242
|
...
gi 1235141840 222 ERL 224
Cdd:PRK09984 243 ERF 245
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-209 |
1.09e-15 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 74.44 E-value: 1.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF--------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTC-------HIGGID 65
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWFrrqtveavKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELliddhplHFGDYS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 66 GRKARLAHV---------PQARHIQfsysVLDFvsfgrP--LCGGILPSPGSKDLEQSAQMLADLG--VSYLEskniNQI 132
Cdd:PRK15112 84 YRSQRIRMIfqdpstslnPRQRISQ----ILDF-----PlrLNTDLEPEQREKQIIETLRQVGLLPdhASYYP----HML 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 133 SGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGE 227
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-200 |
2.02e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 73.63 E-value: 2.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPtFE-----NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI---------DGR 67
Cdd:PRK13649 3 INLQNVSYTYQAGTP-FEgralfDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTlitstsknkDIK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 68 KAR--LAHVPQARHIQ-FSYSVLDFVSFGrPLCGGILPspgsKDLEQSA-QMLADLGVSY-LESKNINQISGGELQMCYI 142
Cdd:PRK13649 82 QIRkkVGLVFQFPESQlFEETVLKDVAFG-PQNFGVSQ----EEAEALArEKLALVGISEsLFEKNPFELSGGQMRRVAI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIAD 200
Cdd:PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYAD 213
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-210 |
2.16e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 72.44 E-value: 2.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSP-TFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK-------ARLAH 73
Cdd:cd03369 7 IEVENLSVRYAPDLPpVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTipledlrSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQarhiqfsysvlDFVSFGrplcGGILPSPGSKDLEQSAQMLADLGVSylESKNinQISGGELQMCYIARALVSEPDIV 153
Cdd:cd03369 87 IPQ-----------DPTLFS----GTIRSNLDPFDEYSDEEIYGALRVS--EGGL--NLSQGQRQLLCLARALLKRPRVL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 154 VLDEPESNLDFNNQAriikLLQQLSRE--KNVTIILNTHFInhaNSIA--DKCLLMKR---KEY 210
Cdd:cd03369 148 VLDEATASIDYATDA----LIQKTIREefTNSTILTIAHRL---RTIIdyDKILVMDAgevKEY 204
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
2-225 |
2.23e-15 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 73.06 E-value: 2.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITG--LYQPLSGTCHIGGIDgrkaRLAHVPQAR- 78
Cdd:TIGR01978 1 LKIKDLHVSVEDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGhpSYEVTSGTILFKGQD----LLELEPDERa 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 ----HIQFSY-------SVLDFVsfgRPLCGGILPSPGSKDLEQSA------QMLADLGVS--YLEsKNINQ-ISGGELQ 138
Cdd:TIGR01978 76 raglFLAFQYpeeipgvSNLEFL---RSALNARRSARGEEPLDLLDfekllkEKLALLDMDeeFLN-RSVNEgFSGGEKK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 139 MCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIA-DKC-LLMKRKEYFFGNKE 216
Cdd:TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL-REPDRSFLIITHYQRLLNYIKpDYVhVLLDGRIVKSGDVE 230
|
....*....
gi 1235141840 217 VVLQEERLG 225
Cdd:TIGR01978 231 LAKELEAKG 239
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-198 |
2.37e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 75.06 E-value: 2.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGR-SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARL-------AH 73
Cdd:PRK11176 342 IEFRNVTFTYPGKeVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLaslrnqvAL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHI-------QFSYSVLDFVSfgrplcggilpspgSKDLEQSAQML--------ADLGVSYLESKNINQISGGELQ 138
Cdd:PRK11176 422 VSQNVHLfndtianNIAYARTEQYS--------------REQIEEAARMAyamdfinkMDNGLDTVIGENGVLLSGGQRQ 487
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 139 MCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIahrLST--IEKADEI 548
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-205 |
2.85e-15 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 73.17 E-value: 2.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 4 VNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGgidgrKARLAHVPQARHIQFS 83
Cdd:PRK11247 15 LNAVSKRYGERT-VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPLAEAREDTRLMFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 84 -------YSVLDFVSFGrpLCGGILPspgskdleQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:PRK11247 89 darllpwKKVIDNVGLG--LKGQWRD--------AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI 207
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-229 |
3.27e-15 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 72.14 E-value: 3.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFK-GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID----GRKA---RLAH 73
Cdd:cd03244 3 IEFKNVSLRYRpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDiskiGLHDlrsRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSV---LDfvsfgrPLCG-------GILPSPGSKDLEQSAQMLADLgvsyLESKNINQISGGELQMCYIA 143
Cdd:cd03244 83 IPQDPVL-FSGTIrsnLD------PFGEysdeelwQALERVGLKEFVESLPGGLDT----VVEEGGENLSVGQRQLLCLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIikllQQLSRE--KNVTIILNTHFInhaNSIADKcllmkrkeyffgNKEVVLQE 221
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALI----QKTIREafKDCTVLTIAHRL---DTIIDS------------DRILVLDK 212
|
....*...
gi 1235141840 222 ERLGEYFN 229
Cdd:cd03244 213 GRVVEFDS 220
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
2-198 |
3.63e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 74.47 E-value: 3.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDgrkarLAHVPQA---R 78
Cdd:COG5265 358 VRFENVSFGYDPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQD-----IRDVTQAslrA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HI----Q----FSYSVLDFVSFGRPLCGgilpspgSKDLEQSAQMlADLGvSYLES--------------KninqISGGE 136
Cdd:COG5265 433 AIgivpQdtvlFNDTIAYNIAYGRPDAS-------EEEVEAAARA-AQIH-DFIESlpdgydtrvgerglK----LSGGE 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 137 LQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:COG5265 500 KQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLVIahrLST--IVDADEI 562
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-205 |
4.43e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 73.22 E-value: 4.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFK---GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLyqpLSGTCHIGG---IDGRKarLAHV 74
Cdd:PRK09473 12 LLDVKDLRVTFStpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL---LAANGRIGGsatFNGRE--ILNL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQA-----RHIQFSYSVLD-------FVSFGRPLCGGILPSPG---SKDLEQSAQMLAdlGVSYLES-KNIN----QISG 134
Cdd:PRK09473 87 PEKelnklRAEQISMIFQDpmtslnpYMRVGEQLMEVLMLHKGmskAEAFEESVRMLD--AVKMPEArKRMKmyphEFSG 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 135 GELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-209 |
6.89e-15 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 73.74 E-value: 6.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFK---GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKaRLAHV--- 74
Cdd:PRK10261 12 VLAVENLNIAFMqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR-RSRQViel 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 -----PQARHIQFSYSVLDF----------VSFGRPLCGGILPSPG---SKDLEQSAQMLADlgVSYLESKNI-----NQ 131
Cdd:PRK10261 91 seqsaAQMRHVRGADMAMIFqepmtslnpvFTVGEQIAESIRLHQGasrEEAMVEAKRMLDQ--VRIPEAQTIlsrypHQ 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 132 ISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKRKE 209
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
2-198 |
7.02e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 71.21 E-value: 7.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHIQ 81
Cdd:cd03290 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSY----------SVLDFVSFGRPLcggilPSPGSKDLEQSAQMLADLGV------SYLESKNINqISGGELQMCYIARA 145
Cdd:cd03290 81 VAYaaqkpwllnaTVEENITFGSPF-----NKQRYKAVTDACSLQPDIDLlpfgdqTEIGERGIN-LSGGQRQRICVARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 146 LVSEPDIVVLDEPESNLDFN-----NQARIIKLLQQLSReknvTIILNTH---FINHANSI 198
Cdd:cd03290 155 LYQNTNIVFLDDPFSALDIHlsdhlMQEGILKFLQDDKR----TLVLVTHklqYLPHADWI 211
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-63 |
7.39e-15 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 71.65 E-value: 7.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLT----------------FAFKGRSPTFE-----NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTC 59
Cdd:COG1134 4 MIEVENVSksyrlyhepsrslkelLLRRRRTRREEfwalkDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
....
gi 1235141840 60 HIGG 63
Cdd:COG1134 84 EVNG 87
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
19-206 |
7.68e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 73.30 E-value: 7.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCH--IG---------GIDGRkARLAHVPQARHIQFSY--- 84
Cdd:TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvrVGdewvdmtkpGPDGR-GRAKRYIGILHQEYDLyph 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 85 -SVLDfvsfgrPLCGGI-LPSPGSKDLEQSAQMLADLGVSYLESKNI-----NQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:TIGR03269 380 rTVLD------NLTEAIgLELPDELARMKAVITLKMVGFDEEKAEEIldkypDELSEGERHRVALAQVLIKEPRIVILDE 453
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 158 PESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:TIGR03269 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-198 |
8.12e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 73.62 E-value: 8.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAF--KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLS-GTCHIGGidgrkaRLAHVPQAR 78
Cdd:PLN03130 615 ISIKNGYFSWdsKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSdASVVIRG------TVAYVPQVS 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIqFSYSVLDFVSFGRPLcggiLPSPGSKDLEQSA-----QMLADLGVSYLESKNINqISGGELQMCYIARALVSEPDIV 153
Cdd:PLN03130 689 WI-FNATVRDNILFGSPF----DPERYERAIDVTAlqhdlDLLPGGDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDVY 762
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 154 VLDEPESNLD-------FNnqaRIIKllQQLSREKNVTIILNTHFINHANSI 198
Cdd:PLN03130 763 IFDDPLSALDahvgrqvFD---KCIK--DELRGKTRVLVTNQLHFLSQVDRI 809
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-163 |
8.75e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 73.39 E-value: 8.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQARHIQ 81
Cdd:PRK15064 320 LEVENLTKGFDNG-PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW----SENANIGYYAQDHAYD 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FS--YSVLDFVSFGRplcggilpspGSKDLEQSAQ-MLADLGVSYLE-SKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:PRK15064 395 FEndLTLFDWMSQWR----------QEGDDEQAVRgTLGRLLFSQDDiKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464
|
....*.
gi 1235141840 158 PESNLD 163
Cdd:PRK15064 465 PTNHMD 470
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
28-190 |
1.06e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.96 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 28 GEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID------GRKARLahvpQARHIQFSYSVLDFVSFGRPLCGGIL 101
Cdd:PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPlhqmdeEARAKL----RAKHVGFVFQSFMLIPTLNALENVEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 102 PS-----PGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQ 176
Cdd:PRK10584 112 PAllrgeSSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
|
170
....*....|....
gi 1235141840 177 LSREKNVTIILNTH 190
Cdd:PRK10584 192 LNREHGTTLILVTH 205
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
13-197 |
1.31e-14 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 71.15 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 13 GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--------IDGR------------KARLA 72
Cdd:PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtinlvrdKDGQlkvadknqlrllRTRLT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSYSVLDFVsFGRPLcgGILPSPGSKDLEQSAQMLADLGVS-YLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK10619 96 MVFQHFNLWSHMTVLENV-MEAPI--QVLGLSKQEARERAVKYLAKVGIDeRAQGKYPVHLSGGQQQRVSIARALAMEPE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTH---FINHANS 197
Cdd:PRK10619 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHemgFARHVSS 220
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-201 |
1.32e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 70.96 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFaFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLK------------TITG--------LYQPLSGTch 60
Cdd:PRK14239 5 ILQVSDLSV-YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRsinrmndlnpevTITGsivynghnIYSPRTDT-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 61 iggIDGRKaRLAHVPQARHiQFSYSVLDFVSFGRPLCG----GILPSPGSKDLEQSAqmLADLGVSYLESKNINqISGGE 136
Cdd:PRK14239 82 ---VDLRK-EIGMVFQQPN-PFPMSIYENVVYGLRLKGikdkQVLDEAVEKSLKGAS--IWDEVKDRLHDSALG-LSGGQ 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 137 LQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsrEKNVTIILNTHFINHANSIADK 201
Cdd:PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTMLLVTRSMQQASRISDR 216
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1-163 |
1.33e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 70.26 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAfKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHvpQARHI 80
Cdd:PRK13543 11 LLAAHALAFS-RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ---IDGKTATRGD--RSRFM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QF---------SYSVLDFVSFgrpLCGgiLPSPGSKDLEQSAqmLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13543 85 AYlghlpglkaDLSTLENLHF---LCG--LHGRRAKQMPGSA--LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157
|
170
....*....|..
gi 1235141840 152 IVVLDEPESNLD 163
Cdd:PRK13543 158 LWLLDEPYANLD 169
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-204 |
1.42e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 71.28 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 6 NLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI--DGR-----------KARLA 72
Cdd:PRK14271 26 NLTLGFAGKT-VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVllGGRsifnyrdvlefRRRVG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQaRHIQFSYSVLDFVSFGrPLCGGILPSPGSKDLEQSaqMLADLG----VSYLESKNINQISGGELQMCYIARALVS 148
Cdd:PRK14271 105 MLFQ-RPNPFPMSIMDNVLAG-VRAHKLVPRKEFRGVAQA--RLTEVGlwdaVKDRLSDSPFRLSGGQQQLLCLARTLAV 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 149 EPDIVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTHFINHANSIADKCLL 204
Cdd:PRK14271 181 NPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHNLAQAARISDRAAL 234
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-190 |
1.68e-14 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 70.48 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGL--YQPLSGTCHIGG-------IDGRkAR--- 70
Cdd:COG0396 2 EIKNLHVSVEGK-EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHpkYEVTSGSILLDGedilelsPDER-ARagi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 -LAhvpqarhiqFSY-------SVLDFVsfgRPLCGGILPSPGS-----KDLEQSAQMLaDLGVSYLEsKNINQ-ISGGE 136
Cdd:COG0396 80 fLA---------FQYpveipgvSVSNFL---RTALNARRGEELSareflKLLKEKMKEL-GLDEDFLD-RYVNEgFSGGE 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 137 ------LQMcyiaraLVSEPDIVVLDEPESNLD---FNNQARIIKLLqqlsREKNVTIILNTH 190
Cdd:COG0396 146 kkrneiLQM------LLLEPKLAILDETDSGLDidaLRIVAEGVNKL----RSPDRGILIITH 198
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-200 |
2.04e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 70.64 E-value: 2.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQ-----PLSGTCHIGGIDGRKARLAHVPQ 76
Cdd:PRK14267 5 IETVNLR-VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIYSPDVDPIEV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQ--FSY-------SVLDFVSFGRPLCGGILPSpgsKDLEQSAQMLADLGVSYLESKN-----INQISGGELQMCYI 142
Cdd:PRK14267 84 RREVGmvFQYpnpfphlTIYDNVAIGVKLNGLVKSK---KELDERVEWALKKAALWDEVKDrlndyPSNLSGGQRQRLVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREknVTIILNTHFINHANSIAD 200
Cdd:PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSD 216
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
20-232 |
2.98e-14 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 71.06 E-value: 2.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG---IDGR--------KARLAHVPQ-AR---HiqfsY 84
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEkgiclppeKRRIGYVFQdARlfpH----Y 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 85 SVLdfvsfGRpLCGGILPSpgskDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDF 164
Cdd:PRK11144 92 KVR-----GN-LRYGMAKS----MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 165 NNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR-KEYFFGNKEVV---------LQEERLGEYFNVPV 232
Cdd:PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQgKVKAFGPLEEVwassamrpwLPKEEQSSILKVTV 239
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
18-213 |
3.32e-14 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 69.48 E-value: 3.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 18 FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHI-----------GGID----GR-----KARLAHVPQA 77
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVrgrvssllglgGGFNpeltGReniylNGRLLGLSRK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSYSVLDFVSFGrplcggilpspgsKDLEQ-----SAQMLADLGVSyleskninqisggelqmcyIARALvsEPDI 152
Cdd:cd03220 118 EIDEKIDEIIEFSELG-------------DFIDLpvktySSGMKARLAFA-------------------IATAL--EPDI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 153 VVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMKRKE-YFFG 213
Cdd:cd03220 164 LLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTVILVSHDPSSIKRLCDRALVLEKGKiRFDG 224
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-234 |
3.61e-14 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 70.20 E-value: 3.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTfAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKT-------ITG-------------LYQPlsgtcHI 61
Cdd:PRK14243 11 LRTENLN-VYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndlIPGfrvegkvtfhgknLYAP-----DV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 62 GGIDGRKaRLAHVPQaRHIQFSYSVLDFVSFGRPLCG--GILPSPGSKDLEQSA------QMLADLGVSyleskninqIS 133
Cdd:PRK14243 85 DPVEVRR-RIGMVFQ-KPNPFPKSIYDNIAYGARINGykGDMDELVERSLRQAAlwdevkDKLKQSGLS---------LS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 134 GGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREknVTIILNTHFINHANSIADKCLLMKRKEYFFG 213
Cdd:PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231
|
250 260
....*....|....*....|..
gi 1235141840 214 NKEVVLQE-ERLGEYFNVPVKR 234
Cdd:PRK14243 232 GRYGYLVEfDRTEKIFNSPQQQ 253
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-193 |
4.28e-14 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 71.08 E-value: 4.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQArhi 80
Cdd:PRK15064 1 MLSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL----DPNERLGKLRQD--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSY---SVLDFVSFG------------RplcggILPSP------GSK--DLE-QSAQM------------LADLGVSyL 124
Cdd:PRK15064 73 QFAFeefTVLDTVIMGhtelwevkqerdR-----IYALPemseedGMKvaDLEvKFAEMdgytaearagelLLGVGIP-E 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 125 ESKN--INQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNqariIKLLQQLSREKNVTIIL---NTHFIN 193
Cdd:PRK15064 147 EQHYglMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT----IRWLEDVLNERNSTMIIishDRHFLN 216
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
22-221 |
6.32e-14 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 70.81 E-value: 6.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 22 SFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSG--TCHIGgidgRKARLAhVPQARHI---QFSYSVLDFVS----- 91
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerQSQFS----HITRLS-FEQLQKLvsdEWQRNNTDMLSpgedd 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 92 FGRPLCGGILPspGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARII 171
Cdd:PRK10938 98 TGRTTAEIIQD--EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 172 KLLQQLSREK-NVTIILN-----THFINHANSIADKCLLMKrkeyffGNKEVVLQE 221
Cdd:PRK10938 176 ELLASLHQSGiTLVLVLNrfdeiPDFVQFAGVLADCTLAET------GEREEILQQ 225
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-189 |
8.36e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.20 E-value: 8.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRSptfENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI--------DGRKARLAHV 74
Cdd:PRK09700 267 EVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKdisprsplDAVKKGMAYI 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARH---------IQFSYSVLDFVSFGRpLCG--GILPSPGSKDLEQSAQMLADLGVSYLEsKNINQISGGELQMCYIA 143
Cdd:PRK09700 344 TESRRdngffpnfsIAQNMAISRSLKDGG-YKGamGLFHEVDEQRTAENQRELLALKCHSVN-QNITELSGGNQQKVLIS 421
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNT 189
Cdd:PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSS 467
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-190 |
8.42e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 70.26 E-value: 8.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLT-FAFKGrSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGlYQPLSGTCHIGGIDGR-------KARLAH 73
Cdd:PRK11174 350 IEAEDLEiLSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELReldpeswRKHLSW 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcggilpspgSKDLEQSAQMLAD-----------LGVSYLESKNINQISGGELQMCYI 142
Cdd:PRK11174 428 VGQNPQL-PHGTLRDNVLLGNP----------DASDEQLQQALENawvseflpllpQGLDTPIGDQAAGLSVGQAQRLAL 496
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTH 190
Cdd:PRK11174 497 ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTH 542
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-158 |
1.12e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 68.22 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGrsptFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGID--GRK-ARLAHV 74
Cdd:COG4674 10 ILYVEDLTVSFDG----FKalnDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDltGLDeHEIARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQ----F-SYSVLD----FVSFGRPLCGGILPSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARA 145
Cdd:COG4674 86 GIGRKFQkptvFeELTVFEnlelALKGDRGVFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGML 165
|
170
....*....|...
gi 1235141840 146 LVSEPDIVVLDEP 158
Cdd:COG4674 166 LAQDPKLLLLDEP 178
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
18-190 |
1.17e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 68.06 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 18 FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYqplSGTCHIGGIDgrkarlahVPQarhIQFS--YSVLDfvsfgrp 95
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAL---KGTPVAGCVD--------VPD---NQFGreASLID------- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 96 lcggILPSPGSKDleQSAQMLADLGVS--YLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKL 173
Cdd:COG2401 105 ----AIGRKGDFK--DAVELLNAVGLSdaVLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARN 178
|
170
....*....|....*..
gi 1235141840 174 LQQLSREKNVTIILNTH 190
Cdd:COG2401 179 LQKLARRAGITLVVATH 195
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
2-206 |
1.20e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 69.74 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRS-PTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGI-------DGRKARLAH 73
Cdd:PRK10789 314 LDVNIRQFTYPQTDhPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIpltklqlDSWRSRLAV 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqFSYSVLDFVSFGRPlcggilpSPGSKDLEQSAQM-----------------LADLGVsyleskninQISGGE 136
Cdd:PRK10789 394 VSQTPFL-FSDTVANNIALGRP-------DATQQEIEHVARLasvhddilrlpqgydteVGERGV---------MLSGGQ 456
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 137 LQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKnvTIILNTHFINhANSIADKCLLMK 206
Cdd:PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLS-ALTEASEILVMQ 523
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-190 |
1.27e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 69.49 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKarlahvPQAR 78
Cdd:PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGrvVNELE------PADR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HI----QfSY------SVLDFVSFGrplcggiLPSPG-SKD-----LEQSAQMLaDLGvSYLESKNiNQISGGELQMCYI 142
Cdd:PRK11650 77 DIamvfQ-NYalyphmSVRENMAYG-------LKIRGmPKAeieerVAEAARIL-ELE-PLLDRKP-RELSGGQRQRVAM 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1235141840 143 ARALVSEPDIVVLDEPESNLD--FNNQARIikLLQQLSREKNVTIILNTH 190
Cdd:PRK11650 146 GRAIVREPAVFLFDEPLSNLDakLRVQMRL--EIQRLHRRLKTTSLYVTH 193
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-190 |
2.91e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 66.51 E-value: 2.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHI 80
Cdd:PRK13540 1 MLDVIELDFDYHDQ-PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSYSVLDFVSFGRPLCGGILPSPGSKDLEQSAQMLAdlgVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPES 160
Cdd:PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFS---LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156
|
170 180 190
....*....|....*....|....*....|
gi 1235141840 161 NLDFNNQARIIKLLQQlSREKNVTIILNTH 190
Cdd:PRK13540 157 ALDELSLLTIITKIQE-HRAKGGAVLLTSH 185
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-198 |
4.34e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.21 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRK-ARLAH------- 73
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR---LDGRPlSSLSHsvlrqgv 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 -VPQARHIQFSYSVLDFVSFGRPLcggilpspgSKD-----LEQSaqMLADL------GVSYLESKNINQISGGELQMCY 141
Cdd:PRK10790 418 aMVQQDPVVLADTFLANVTLGRDI---------SEEqvwqaLETV--QLAELarslpdGLYTPLGEQGNNLSVGQKQLLA 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 142 IARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII---LNThfINHANSI 198
Cdd:PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIahrLST--IVEADTI 544
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-205 |
4.51e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 68.22 E-value: 4.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAfkgRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKAR------LA 72
Cdd:PRK10982 250 ILEVRNLTSL---RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGkkINNHNANeainhgFA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQFSYSVLDfVSFGrPLCGGILPSPGSKDLEQSAQMLADLG--VSYLESK------NINQISGGELQMCYIAR 144
Cdd:PRK10982 327 LVTEERRSTGIYAYLD-IGFN-SLISNIRNYKNKVGLLDNSRMKSDTQwvIDSMRVKtpghrtQIGSLSGGNQQKVIIGR 404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVM 464
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
23-186 |
5.78e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 67.89 E-value: 5.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 23 FSLP---EGEILCILGPNGVGKTTLLKTITGLYQP-----------------LSGT---CHIGGIDGRKARLAHVPQarH 79
Cdd:COG1245 91 YGLPvpkKGKVTGILGPNGIGKSTALKILSGELKPnlgdydeepswdevlkrFRGTelqDYFKKLANGEIKVAHKPQ--Y 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSYSVLDfvsfGRPlcGGILpspgSK-DLEQSAQMLAD-LGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:COG1245 169 VDLIPKVFK----GTV--RELL----EKvDERGKLDELAEkLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238
|
170 180 190
....*....|....*....|....*....|
gi 1235141840 158 PESNLDFNNQARIIKLLQQLSRE-KNVTII 186
Cdd:COG1245 239 PSSYLDIYQRLNVARLIRELAEEgKYVLVV 268
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-200 |
6.70e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 66.61 E-value: 6.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 18 FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG-----------IDGRKAR--LAHVPQARHIQFSY 84
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGkvlyfgkdifqIDAIKLRkeVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 85 SVLDFVSFGrplcggiLPSPGSKDLEQSAQMLAD----LGVSYLESKNIN----QISGGELQMCYIARALVSEPDIVVLD 156
Cdd:PRK14246 106 SIYDNIAYP-------LKSHGIKEKREIKKIVEEclrkVGLWKEVYDRLNspasQLSGGQQQRLTIARALALKPKVLLMD 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSREknVTIILNTHFINHANSIAD 200
Cdd:PRK14246 179 EPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVAD 220
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
111-206 |
8.99e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 67.42 E-value: 8.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 111 QSAQMLADLGvsyleskniNQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:PRK15134 145 QAAKRLTDYP---------HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215
|
90
....*....|....*.
gi 1235141840 191 FINHANSIADKCLLMK 206
Cdd:PRK15134 216 NLSIVRKLADRVAVMQ 231
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
23-186 |
9.23e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 67.14 E-value: 9.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 23 FSLP---EGEILCILGPNGVGKTTLLKTITGLYQP-LSGTCHIGGID-------------------GRKARLAHVPQarH 79
Cdd:PRK13409 91 YGLPipkEGKVTGILGPNGIGKTTAVKILSGELIPnLGDYEEEPSWDevlkrfrgtelqnyfkklyNGEIKVVHKPQ--Y 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 80 IQFSYSVLDfvsfgrplcggilpspGS-KDLEQSA-------QMLADLGVSYLESKNINQISGGELQMCYIARALVSEPD 151
Cdd:PRK13409 169 VDLIPKVFK----------------GKvRELLKKVdergkldEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232
|
170 180 190
....*....|....*....|....*....|....*
gi 1235141840 152 IVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
19-190 |
1.24e-12 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 67.06 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDG-----------RKARLAHVPQARHIQFSYSVL 87
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVatldadalaqlRREHFGFIFQRYHLLSHLTAA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 88 DFVSFGRPLCGgilpSPGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:PRK10535 105 QNVEVPAVYAG----LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
|
170 180
....*....|....*....|...
gi 1235141840 168 ARIIKLLQQLsREKNVTIILNTH 190
Cdd:PRK10535 181 EEVMAILHQL-RDRGHTVIIVTH 202
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
19-205 |
1.24e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 66.77 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQ-PLSGTCHIGG--IDGR------KARLAHVPQARHIQFSYSVLdf 89
Cdd:TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGkpVDIRnpaqaiRAGIAMVPEDRKRHGIVPIL-- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 90 vSFGRPLCGGILPS-PGSKDLEQSAQMLA-DLGVSYLESKN------INQISGGELQMCYIARALVSEPDIVVLDEPESN 161
Cdd:TIGR02633 355 -GVGKNITLSVLKSfCFKMRIDAAAELQIiGSAIQRLKVKTaspflpIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1235141840 162 LDFNNQARIIKLLQQLSREkNVTIILNTHFINHANSIADKCLLM 205
Cdd:TIGR02633 434 VDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVI 476
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1-165 |
1.26e-12 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 67.19 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggidgrkaRLAHVPQARHI 80
Cdd:PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF---------RSAKVRMAVFS 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 81 QFSYSVLDFVSfgRPLCGGILPSPGSKDLEQSAQmLADLGVS-YLESKNINQISGGELQMCYIARALVSEPDIVVLDEPE 159
Cdd:PLN03073 579 QHHVDGLDLSS--NPLLYMMRCFPGVPEQKLRAH-LGSFGVTgNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
|
....*.
gi 1235141840 160 SNLDFN 165
Cdd:PLN03073 656 NHLDLD 661
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-201 |
1.28e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 66.80 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF----------ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRK 68
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLLnrvtrevhavEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGqrIDTLS 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 69 ARLAHvPQARHIQF----SYSVLD-----FVSFGRPL-CGGILPspGSKDLEQSAQMLADLGVSYLES-KNINQISGGEL 137
Cdd:PRK10261 393 PGKLQ-ALRRDIQFifqdPYASLDprqtvGDSIMEPLrVHGLLP--GKAAAARVAWLLERVGLLPEHAwRYPHEFSGGQR 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 138 QMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINHANSIADK 201
Cdd:PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL----FISHDMAVVER 529
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
28-190 |
1.33e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.83 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 28 GEILCILGPNGVGKTTLLKTITGLYQplsGTCHIGGI--DGRK------ARLAHVPQARHIQFSYSV---LDFVSFGRpl 96
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTIlaNNRKptkqilKRTGFVTQDDILYPHLTVretLVFCSLLR-- 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 97 cggiLPSPGSKDLEQSA--QMLADLGVSYLESKNINQ-----ISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQAR 169
Cdd:PLN03211 169 ----LPKSLTKQEKILVaeSVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
|
170 180
....*....|....*....|.
gi 1235141840 170 IIKLLQQLSrEKNVTIILNTH 190
Cdd:PLN03211 245 LVLTLGSLA-QKGKTIVTSMH 264
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-201 |
2.26e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.11 E-value: 2.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGrSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYqPlSGTcHIGGI--DGRKARLAHV--PQ 76
Cdd:PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-P-HGT-YEGEIifEGEELQASNIrdTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHIQFSY---------SVLDFVSFGR-PLCGGILPSPgsKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARAL 146
Cdd:PRK13549 81 RAGIAIIHqelalvkelSVLENIFLGNeITPGGIMDYD--AMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 147 VSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADK 201
Cdd:PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDT 212
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-207 |
2.60e-12 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 65.86 E-value: 2.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKT-TLLkTITGLYQP----LSGTCHIGGIDgrkarLA 72
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEavkGVSFDIAAGETLALVGESGSGKSvTAL-SILRLLPDpaahPSGSILFDGQD-----LL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQA--RHI---------QFSYSVLDFV-SFGRPLCGGIL---PSPGSKDLEQSAQMLADLGVSYLESKnIN----QIS 133
Cdd:COG4172 80 GLSERelRRIrgnriamifQEPMTSLNPLhTIGKQIAEVLRlhrGLSGAAARARALELLERVGIPDPERR-LDayphQLS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 134 GGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLMKR 207
Cdd:COG4172 159 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQ 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-187 |
3.26e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 65.43 E-value: 3.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDG------RKARLAHV 74
Cdd:COG3845 259 EVENLSVRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGedITGlsprerRRLGVAYI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 75 PQARHIQF---SYSVLDFVSFGR----PLCGGILPSPGsKDLEQSAQMLADLGVSyleSKNINQI----SGGELQMCYIA 143
Cdd:COG3845 339 PEDRLGRGlvpDMSVAENLILGRyrrpPFSRGGFLDRK-AIRAFAEELIEEFDVR---TPGPDTParslSGGNQQKVILA 414
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1235141840 144 RALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIIL 187
Cdd:COG3845 415 RELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLL 457
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
2-163 |
4.27e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.77 E-value: 4.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTChiggIDGRkARLAHVPQARHIq 81
Cdd:PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS----VVIR-GSVAYVPQVSWI- 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFVSFGRPLcggiLPSPGSKDLEQSA-----QMLADLGVSYLESKNINqISGGELQMCYIARALVSEPDIVVLD 156
Cdd:PLN03232 691 FNATVRENILFGSDF----ESERYWRAIDVTAlqhdlDLLPGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFD 765
|
....*..
gi 1235141840 157 EPESNLD 163
Cdd:PLN03232 766 DPLSALD 772
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-198 |
7.95e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 64.67 E-value: 7.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPT--FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRK--------ARL 71
Cdd:PTZ00265 383 IQFKNVRFHYDTRKDVeiYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKdinlkwwrSKI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQ---------ARHIQFS-YSVLDFVSFG--------------------RPLCGG----ILPSPGSKDLEQ------ 111
Cdd:PTZ00265 463 GVVSQdpllfsnsiKNNIKYSlYSLKDLEALSnyynedgndsqenknkrnscRAKCAGdlndMSNTTDSNELIEmrknyq 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 112 ----------SAQMLADLGVSYLESK-------NINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLL 174
Cdd:PTZ00265 543 tikdsevvdvSKKVLIHDFVSALPDKyetlvgsNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
|
250 260
....*....|....*....|....*..
gi 1235141840 175 QQLSREKN-VTIILNTHF--INHANSI 198
Cdd:PTZ00265 623 NNLKGNENrITIIIAHRLstIRYANTI 649
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
28-226 |
1.03e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 64.25 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 28 GEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG----IDGRKA-----------RLAHVPQarhiqfsYSVLDFVSF 92
Cdd:PRK10762 30 GRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGkevtFNGPKSsqeagigiihqELNLIPQ-------LTIAENIFL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 93 GRPLC---GGILpspGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQAR 169
Cdd:PRK10762 103 GREFVnrfGRID---WKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 170 IIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMkRKEYFFGNKEVV-LQEERLGE 226
Cdd:PRK10762 180 LFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVF-RDGQFIAEREVAdLTEDSLIE 235
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-194 |
1.44e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 63.57 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTF----------ENISFSLPEGEILCILGPNGVGKTT----LLKTITGL------YQPLSGTch 60
Cdd:PRK15134 275 LLDVEQLQVAFPIRKGILkrtvdhnvvvKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINSQgeiwfdGQPLHNL-- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 61 iggidGRKARLahvPQARHIQFSY-----------SVLDFVSFGRPLCGGILpSPGSKDlEQSAQMLADLGVS-YLESKN 128
Cdd:PRK15134 353 -----NRRQLL---PVRHRIQVVFqdpnsslnprlNVLQIIEEGLRVHQPTL-SAAQRE-QQVIAVMEEVGLDpETRHRY 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 129 INQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINH 194
Cdd:PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL----FISH 484
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-205 |
3.38e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 61.95 E-value: 3.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSP----TFENISFSLPEGEILCILGPNGVGKTTLLK------------TITGLYQPLSGTCHIGGID 65
Cdd:PRK13645 7 IILDNVSYTYAKKTPfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQltngliisetgqTIVGDYAIPANLKKIKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 66 GRKARLAHVPQARHIQ-FSYSVLDFVSFGrPLCGGILPSPGSKDLEQSAQmLADLGVSYLEsKNINQISGGELQMCYIAR 144
Cdd:PRK13645 87 RLRKEIGLVFQFPEYQlFQETIEKDIAFG-PVNLGENKQEAYKKVPELLK-LVQLPEDYVK-RSPFELSGGQKRRVALAG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-58 |
4.70e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 62.12 E-value: 4.70e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 2 IEVNNLTFAFKGR--SPTFE--NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGT 58
Cdd:COG4615 328 LELRGVTYRYPGEdgDEGFTlgPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGE 388
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-201 |
4.97e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.15 E-value: 4.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFkGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQ--PLSGTCHIGGI--------DGRKAR 70
Cdd:TIGR02633 1 LLEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSplkasnirDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 LAHVPQARHIQFSYSVLDFVSFGRPLC--GGILPSPGSkdLEQSAQMLADLGVSYL-ESKNINQISGGELQMCYIARALV 147
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITlpGGRMAYNAM--YLRAKNLLRELQLDADnVTRPVGDYGGGQQQLVEIAKALN 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTHFINHANSIADK 201
Cdd:TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDT 210
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-190 |
5.59e-11 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 60.87 E-value: 5.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGrsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQP----LSGTCHIGGID-------GRKAr 70
Cdd:PRK10418 5 IELRNIALQAAQ--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPvapcalrGRKI- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 71 lAHVPQARHIQFSySVLDFVSFGRPLCggiLPSPGSKDLEQSAQMLADLGVSylESKNIN-----QISGGELQMCYIARA 145
Cdd:PRK10418 82 -ATIMQNPRSAFN-PLHTMHTHARETC---LALGKPADDATLTAALEAVGLE--NAARVLklypfEMSGGMLQRMMIALA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1235141840 146 LVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:PRK10418 155 LLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
23-186 |
6.97e-11 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 60.46 E-value: 6.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 23 FSLP---EGEILCILGPNGVGKTTLLKTITGLYQPLSGTC-----------HIGG---------IDGRKARLAHVPQ-AR 78
Cdd:cd03236 18 HRLPvprEGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGselqnyftkLLEGDVKVIVKPQyVD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HI--QFSYSVLDFVSfgrplcggilpspGSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLD 156
Cdd:cd03236 98 LIpkAVKGKVGELLK-------------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD 164
|
170 180 190
....*....|....*....|....*....|
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:cd03236 165 EPSSYLDIKQRLNAARLIRELAEDDNYVLV 194
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-201 |
1.14e-10 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 60.59 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFK---GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGL----YQPLSGTCHIGGIDgrkaRLAH 73
Cdd:PRK15093 3 LLDIRNLTIEFKtsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVtkdnWRVTADRMRFDDID----LLRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARH----------IQFSYSVLD-FVSFGRPLCGGIlpsPGSK-----------DLEQSAQMLADLGVSylESKNI-- 129
Cdd:PRK15093 79 SPRERRklvghnvsmiFQEPQSCLDpSERVGRQLMQNI---PGWTykgrwwqrfgwRKRRAIELLHRVGIK--DHKDAmr 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1235141840 130 ---NQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADK 201
Cdd:PRK15093 154 sfpYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-206 |
1.17e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 61.14 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHiggIDGRKARLAHvPQARHIQ 81
Cdd:PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL---LDGKPVTAEQ-PEDYRKL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFVSFGRPLCggilPSPGSKDLEQSAQMLADLGVSY---LESKNIN--QISGGELQMCYIARALVSEPDIVVLD 156
Cdd:PRK10522 399 FSAVFTDFHLFDQLLG----PEGKPANPALVEKWLERLKMAHkleLEDGRISnlKLSKGQKKRLALLLALAEERDILLLD 474
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 157 EPESNLDfnNQARII---KLLQQLsREKNVTIILNTHfINHANSIADKCLLMK 206
Cdd:PRK10522 475 EWAADQD--PHFRREfyqVLLPLL-QEMGKTIFAISH-DDHYFIHADRLLEMR 523
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
15-223 |
1.62e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 59.87 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 15 SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrkaRLAHVPQARHIQ---FSYSVLDFVS 91
Cdd:cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWIMpgtIKENIIFGVS 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 92 FGRPLCGGILPSPgskDLEQSAQMLADLGVSYLESKNINqISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARII 171
Cdd:cd03291 124 YDEYRYKSVVKAC---QLEEDITKFPEKDNTVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1235141840 172 -----KLLqqlsreKNVTIILNTHFINHANsIADKCLLMKRKEYFFGNKEVVLQEER 223
Cdd:cd03291 200 escvcKLM------ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQSLR 249
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
19-201 |
1.76e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 60.57 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYqPlSGT-----------CHIGGIDGRKAR--------LAHVPQ--- 76
Cdd:NF040905 18 DDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-P-HGSyegeilfdgevCRFKDIRDSEALgiviihqeLALIPYlsi 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ARHI-----QFSYSVLDFvsfgrplcggilpspgSKDLEQSAQMLADLGVSylESKN--INQISGGELQMCYIARALVSE 149
Cdd:NF040905 96 AENIflgneRAKRGVIDW----------------NETNRRARELLAKVGLD--ESPDtlVTDIGVGKQQLVEIAKALSKD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTHFINHANSIADK 201
Cdd:NF040905 158 VKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADS 208
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-191 |
2.17e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 59.27 E-value: 2.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITG--LYQPLSGTCHIGGIDgrkaRLAHVPQAR 78
Cdd:CHL00131 7 ILEIKNLHASVNEN-EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGES----ILDLEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 -----HIQFSYSV----LDFVSFGRPLCGGILPSPGSKDLE--------QSAQMLADLGVSYLeSKNINQ-ISGGELQMC 140
Cdd:CHL00131 82 ahlgiFLAFQYPIeipgVSNADFLRLAYNSKRKFQGLPELDplefleiiNEKLKLVGMDPSFL-SRNVNEgFSGGEKKRN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 141 YIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTHF 191
Cdd:CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHY 210
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
15-213 |
2.51e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 60.31 E-value: 2.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 15 SPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrkaRLAHVPQARHIQ-----------FS 83
Cdd:TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMpgtikdniifgLS 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 84 YSVLDFVSFGRPlCGgiLPSPGSKDLEQSAQMLADLGVSyleskninqISGGELQMCYIARALVSEPDIVVLDEPESNLD 163
Cdd:TIGR01271 513 YDEYRYTSVIKA-CQ--LEEDIALFPEKDKTVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 164 FNNQARIIK--LLQQLSrekNVTIILNTHFINHANSiADKCLLMKRKE-YFFG 213
Cdd:TIGR01271 581 VVTEKEIFEscLCKLMS---NKTRILVTSKLEHLKK-ADKILLLHEGVcYFYG 629
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-190 |
3.66e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 59.56 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 5 NNLTFAFKGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGtchiggidgrKARLA------HVPQAR 78
Cdd:TIGR03719 8 NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNG----------EARPQpgikvgYLPQEP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSYSVLDFVSFGRPLCGGILpspgsKDLEQSAQMLADLGVSY---------------------LESK---------- 127
Cdd:TIGR03719 78 QLDPTKTVRENVEEGVAEIKDAL-----DRFNEISAKYAEPDADFdklaaeqaelqeiidaadawdLDSQleiamdalrc 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1235141840 128 -----NINQISGGELQMCYIARALVSEPDIVVLDEPESNLDfnnqARIIKLLQQLSREKNVTIILNTH 190
Cdd:TIGR03719 153 ppwdaDVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTH 216
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
19-190 |
7.38e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 58.61 E-value: 7.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQARHI-------QFSY--SVLDF 89
Cdd:TIGR00954 469 ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTK----PAKGKLFYVPQRPYMtlgtlrdQIIYpdSSEDM 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 90 VSFGRplcggilpspGSKDLEqsaQMLADLGVSYLESKNI---------NQISGGELQMCYIARALVSEPDIVVLDEPES 160
Cdd:TIGR00954 545 KRRGL----------SDKDLE---QILDNVQLTHILEREGgwsavqdwmDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611
|
170 180 190
....*....|....*....|....*....|
gi 1235141840 161 NLDFNNQARIIkllqQLSREKNVTIILNTH 190
Cdd:TIGR00954 612 AVSVDVEGYMY----RLCREFGITLFSVSH 637
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
18-205 |
7.59e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 58.52 E-value: 7.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 18 FENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKAR------LAHVPQARhiQFSYSVLDF 89
Cdd:PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGkeINALSTAqrlargLVYLPEDR--QSSGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 90 --------VSFGRPlcgGILPSPG--SKDLEQSAQMLadlGVSYLESKN-INQISGGELQMCYIARALVSEPDIVVLDEP 158
Cdd:PRK15439 357 plawnvcaLTHNRR---GFWIKPAreNAVLERYRRAL---NIKFNHAEQaARTLSGGNQQKVLIAKCLEASPQLLIVDEP 430
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 159 ESNLDFNNQARIIKLLQQLSrEKNVTIILNTHFINHANSIADKCLLM 205
Cdd:PRK15439 431 TRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVM 476
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-205 |
9.61e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 58.49 E-value: 9.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKG-RSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG------IDGRKARLAH 73
Cdd:TIGR01257 1937 ILRLNELTKVYSGtSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGksiltnISDVHQNMGY 2016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQarhiqfsYSVLDFVSFGRP---LCGGILPSPgSKDLEQSAQM-LADLGVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:TIGR01257 2017 CPQ-------FDAIDDLLTGREhlyLYARLRGVP-AEEIEKVANWsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTHFINHANSIADKCLLM 205
Cdd:TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR-AVVLTSHSMEECEALCTRLAIM 2143
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
20-190 |
1.11e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 56.18 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTitGLYQPLsgtchiggidgrKARLAHVPQArhiqFSYSVLDFVSfgrplcgg 99
Cdd:cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNE--GLYASG------------KARLISFLPK----FSRNKLIFID-------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 100 ilpspgskdleqSAQMLADLGVSYLE-SKNINQISGGELQMCYIARALVSEPD--IVVLDEPESNLDFNNQARIIKLLQQ 176
Cdd:cd03238 67 ------------QLQFLIDVGLGYLTlGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKG 134
|
170
....*....|....
gi 1235141840 177 LsREKNVTIILNTH 190
Cdd:cd03238 135 L-IDLGNTVILIEH 147
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-187 |
1.59e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 57.71 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTfafkgrSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--------IDGRKARLAH 73
Cdd:PRK10762 258 LKVDNLS------GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGhevvtrspQDGLANGIVY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARH---IQFSYSVLDFVSfgrpLCGGILPSPGSKDLEQSAQMLAdlgVS-YLESKNI-----NQI----SGGELQMC 140
Cdd:PRK10762 332 ISEDRKrdgLVLGMSVKENMS----LTALRYFSRAGGSLKHADEQQA---VSdFIRLFNIktpsmEQAigllSGGNQQKV 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1235141840 141 YIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIIL 187
Cdd:PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIIL 450
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
131-190 |
2.61e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 56.67 E-value: 2.61e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 131 QISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
5-186 |
3.65e-09 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 54.96 E-value: 3.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 5 NNLTFAFKGRSPTFE---NISFSLPEGEILCILGPNGVGKTTLLKTITGL---YQPLSGTCHIGGIDGRKARLAHvpqar 78
Cdd:cd03233 7 RNISFTTGKGRSKIPilkDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegNVSVEGDIHYNGIPYKEFAEKY----- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 HIQFSYSVLDFVSFgrplcggilPSPGSKD-LEQSAQMLADlgvsylesKNINQISGGELQMCYIARALVSEPDIVVLDE 157
Cdd:cd03233 82 PGEIIYVSEEDVHF---------PTLTVREtLDFALRCKGN--------EFVRGISGGERKRVSIAEALVSRASVLCWDN 144
|
170 180
....*....|....*....|....*....
gi 1235141840 158 PESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:cd03233 145 STRGLDSSTALEILKCIRTMADVLKTTTF 173
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
19-206 |
5.16e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 55.89 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGG--IDGRKARLA------HVPQARHIQFSYSVLDFV 90
Cdd:PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeIDFKSSKEAlengisMVHQELNLVLQRSVMDNM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 91 SFGR-PLCGGILPSpgSKDLEQSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQAR 169
Cdd:PRK10982 95 WLGRyPTKGMFVDQ--DKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNH 172
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 170 IIKLLQQLsREKNVTIILNTHFINHANSIADKCLLMK 206
Cdd:PRK10982 173 LFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILR 208
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-228 |
6.26e-09 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 55.01 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGrSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTC---------HIGGIDGRKARL 71
Cdd:PRK13638 1 MLATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVlwqgkpldySKRGLLALRQQV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 72 AHVPQARHIQFSYSVLDF-VSFG-RPLcgGILPSPGSKDLEQsAQMLADlgVSYLESKNINQISGGELQMCYIARALVSE 149
Cdd:PRK13638 80 ATVFQDPEQQIFYTDIDSdIAFSlRNL--GVPEAEITRRVDE-ALTLVD--AQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 150 PDIVVLDEPESNLDFNNQARIIKLLQQLSREKNvTIILNTHFINHANSIADKCLLMKRKEyffgnkevVLQEERLGEYF 228
Cdd:PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQ--------ILTHGAPGEVF 224
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
20-187 |
1.02e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 55.32 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQplsGTCHigG---IDGRKAR-----------LAHVPQARHIQ---- 81
Cdd:PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWE--GeifIDGKPVKirnpqqaiaqgIAMVPEDRKRDgivp 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 -------FSYSVLDFVSFGRPLcggilpspgSKDLEQSA--QMLADLGV--SYLESKnINQISGGELQMCYIARALVSEP 150
Cdd:PRK13549 355 vmgvgknITLAALDRFTGGSRI---------DDAAELKTilESIQRLKVktASPELA-IARLSGGNQQKAVLAKCLLLNP 424
|
170 180 190
....*....|....*....|....*....|....*..
gi 1235141840 151 DIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIIL 187
Cdd:PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIV 460
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-190 |
1.03e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.76 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 28 GEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggIDGRKARLAHVPQARHIQFSYSVLDFvsfgrplcggilpspgsk 107
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY--IDGEDILEEVLDQLLLIIVGGKKASG------------------ 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 108 dleQSAQMLADLgvsyleskninqisggelqmcyIARALVSEPDIVVLDEPESNLDFNNQARIIKL-----LQQLSREKN 182
Cdd:smart00382 62 ---SGELRLRLA----------------------LALARKLKPDVLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKN 116
|
....*...
gi 1235141840 183 VTIILNTH 190
Cdd:smart00382 117 LTVILTTN 124
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-203 |
1.61e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 54.64 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLY-QPLSGTCHIGG--------IDGRKARLA 72
Cdd:PRK10938 261 IVLNNGVVSYNDR-PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHpQGYSNDLTLFGrrrgsgetIWDIKKHIG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 73 HVPQARHIQF--SYSVLDFVsfgrpLCG-----GILPSPGSKDLEQSAQMLADLGVS-YLESKNINQISGGELQMCYIAR 144
Cdd:PRK10938 340 YVSSSLHLDYrvSTSVRNVI-----LSGffdsiGIYQAVSDRQQKLAQQWLDILGIDkRTADAPFHSLSWGQQRLALIVR 414
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 145 ALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIlnthFINHANSIADKCL 203
Cdd:PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLL----FVSHHAEDAPACI 469
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
2-196 |
3.71e-08 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 53.08 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNltfaFKGrsptFENISFSLPEGeILCILGPNGVGKTTLLK------------------------------TITG- 50
Cdd:COG3593 6 IKIKN----FRS----IKDLSIELSDD-LTVLVGENNSGKSSILEalrlllgpsssrkfdeedfylgddpdlpeiEIELt 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 51 LYQPLSGTCHIGGIDGRKARLAHVPQARHIQFSYSVLDFVSFGRPLCGGILPSPGSK---DLEQSAQMLADLGVSYLESK 127
Cdd:COG3593 77 FGSLLSRLLRLLLKEEDKEELEEALEELNEELKEALKALNELLSEYLKELLDGLDLElelSLDELEDLLKSLSLRIEDGK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 128 N--INQISGGELQMCYIA--RALV-----SEPDIVVLDEPESNLDFNNQARIIKLLQQLSrEKNVTIILNTH---FINHA 195
Cdd:COG3593 157 ElpLDRLGSGFQRLILLAllSALAelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELS-EKPNQVIITTHsphLLSEV 235
|
.
gi 1235141840 196 N 196
Cdd:COG3593 236 P 236
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
12-190 |
3.96e-08 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 53.51 E-value: 3.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 12 KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQP---LSGTCHIGG--IDGRK--ARLAHVPQARHIQFSY 84
Cdd:TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGmpIDAKEmrAISAYVQQDDLFIPTL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 85 SVLDFVSFGRPLcggILPSPGSKDLEQSA--QMLADLGVSYLESKNINQ------ISGGELQMCYIARALVSEPDIVVLD 156
Cdd:TIGR00955 115 TVREHLMFQAHL---RMPRRVTKKEKRERvdEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190
....*....|....*....|....*....|....
gi 1235141840 157 EPESNLDFNNQARIIKLLQQLSrEKNVTIILNTH 190
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIH 224
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
27-201 |
4.25e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 51.42 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 27 EGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIdgrkaRLAHVPQarhiqfsysvldfvsfgrplcggilpspgs 106
Cdd:cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-----TPVYKPQ------------------------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 107 kdleqsaqmladlgvsYLEskninqISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTII 186
Cdd:cd03222 69 ----------------YID------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTAL 126
|
170
....*....|....*
gi 1235141840 187 LNTHFINHANSIADK 201
Cdd:cd03222 127 VVEHDLAVLDYLSDR 141
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
20-227 |
4.65e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 53.36 E-value: 4.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGidgrKARLAHVPQARHIQFSYsvLDFVSFGRPLCGg 99
Cdd:PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG----SAALIAISSGLNGQLTG--IENIELKGLMMG- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 100 iLPSPGSKDLEQSAQMLADLGvsylesKNINQ----ISGGELQMCYIARALVSEPDIVVLDEPesnLDFNNQARIIKLLQ 175
Cdd:PRK13545 115 -LTKEKIKEIIPEIIEFADIG------KFIYQpvktYSSGMKSRLGFAISVHINPDILVIDEA---LSVGDQTFTKKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1235141840 176 QLS--REKNVTIILNTHFINHANSIADKCLLM---KRKEYffGN-KEVVLQ-EERLGEY 227
Cdd:PRK13545 185 KMNefKEQGKTIFFISHSLSQVKSFCTKALWLhygQVKEY--GDiKEVVDHyDEFLKKY 241
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-190 |
2.72e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 51.10 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 3 EVNNLTFAFKGRSpTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIggidGRKARLAHVPQARHI-Q 81
Cdd:PRK11147 321 EMENVNYQIDGKQ-LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC----GTKLEVAYFDQHRAElD 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 82 FSYSVLDFVSFGRplcggilpspgsKDLEQSAQMLADLGvsYLES---------KNINQISGGELQMCYIARALVSEPDI 152
Cdd:PRK11147 396 PEKTVMDNLAEGK------------QEVMVNGRPRHVLG--YLQDflfhpkramTPVKALSGGERNRLLLARLFLKPSNL 461
|
170 180 190
....*....|....*....|....*....|....*...
gi 1235141840 153 VVLDEPESNLDFNNqariIKLLQQLSREKNVTIILNTH 190
Cdd:PRK11147 462 LILDEPTNDLDVET----LELLEELLDSYQGTVLLVSH 495
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
132-192 |
4.25e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.80 E-value: 4.25e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 132 ISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFI 192
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
128-212 |
8.59e-07 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 48.89 E-value: 8.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 128 NINQISGGELQMCYIARALV---SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTHFINHANSIADkclL 204
Cdd:COG1106 199 PLSEESDGTKRLLALAGALLdalAKGGVLLIDEIEASLHPSLLRKLLKLFLDLANKNNAQLIFTTHSTELLDAFLE---L 275
|
....*...
gi 1235141840 205 MKRKEYFF 212
Cdd:COG1106 276 LRRDQIWF 283
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
114-200 |
1.21e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 48.02 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 114 QMLADLGVSYLE-SKNINQISGGELQMCYIARALVSEPD--IVVLDEPESNLDFNNQARIIKLLQQLsREKNVTIILNTH 190
Cdd:cd03270 119 GFLVDVGLGYLTlSRSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRL-RDLGNTVLVVEH 197
|
90
....*....|...
gi 1235141840 191 ---FINHANSIAD 200
Cdd:cd03270 198 dedTIRAADHVID 210
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
128-190 |
2.50e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 47.77 E-value: 2.50e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 128 NINQISGGELQMCYIARALVS---EPDIVVLDEPESNLDFNNQARIIKLLQQLSReKNVTIILNTH 190
Cdd:pfam13304 233 PAFELSDGTKRLLALLAALLSalpKGGLLLIDEPESGLHPKLLRRLLELLKELSR-NGAQLILTTH 297
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
12-191 |
3.21e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 12 KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTItglyqplsgtCHIGGIDGRKARLAHVPQARHIQfSYSVLDFVS 91
Cdd:cd03227 5 GRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI----------GLALGGAQSATRRRSGVKAGCIV-AAVSAELIF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 92 FgrplcggilpspgskdleqsaqmladlgvsylesknINQISGGE---LQMCYI-ARALVSEPDIVVLDEPESNLDFNNQ 167
Cdd:cd03227 74 T------------------------------------RLQLSGGEkelSALALIlALASLKPRPLYILDEIDRGLDPRDG 117
|
170 180
....*....|....*....|....
gi 1235141840 168 ARIIKLLQQLSREKNVTIILnTHF 191
Cdd:cd03227 118 QALAEAILEHLVKGAQVIVI-THL 140
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1-174 |
4.72e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 46.02 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRSPTFENISFsLPEGeILCILGPNGVGKTTLLKTITGLYQPLSG-----TCHIGGIdgRKARLAHVP 75
Cdd:PRK13541 1 MLSLHQLQFNIEQKNLFDLSITF-LPSA-ITYIKGANGCGKSSLLRMIAGIMQPSSGniyykNCNINNI--AKPYCTYIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 76 QARHIQFSYSVLDFVSFGRPLCggilpspGSKDLEQSAQMLADLgvSYLESKNINQISGGELQMCYIARALVSEPDIVVL 155
Cdd:PRK13541 77 HNLGLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKL--HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147
|
170
....*....|....*....
gi 1235141840 156 DEPESNLDFNNQARIIKLL 174
Cdd:PRK13541 148 DEVETNLSKENRDLLNNLI 166
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-190 |
6.74e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 46.65 E-value: 6.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 5 NNLTFAFKGRSPTFENISFS-LPEGEIlCILGPNGVGKTTLLKTITGLYQPLSGtchiggidgrKARLA------HVPQA 77
Cdd:PRK11819 10 NRVSKVVPPKKQILKDISLSfFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEG----------EARPApgikvgYLPQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 78 RHIQFSYSVLDFVSFGrplCGGIlpspgsKDL-----EQSAQM---------LAD-----------LGVSYLESK----- 127
Cdd:PRK11819 79 PQLDPEKTVRENVEEG---VAEV------KAAldrfnEIYAAYaepdadfdaLAAeqgelqeiidaADAWDLDSQleiam 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 128 ----------NINQISGGELQMCYIARALVSEPDIVVLDEPESNLDfnnqARIIKLLQQLSREKNVTIILNTH 190
Cdd:PRK11819 150 dalrcppwdaKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD----AESVAWLEQFLHDYPGTVVAVTH 218
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
19-158 |
7.04e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 46.66 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKA--------RLAHVPQ--ARHIQFSYSV-- 86
Cdd:NF033858 18 DDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADArhrravcpRIAYMPQglGKNLYPTLSVfe 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 87 -LDFvsFGRpLCGgilpspgsKDLEQSAQMLADLgvsyLESKNIN--------QISGG---ELQMCYiarALVSEPDIVV 154
Cdd:NF033858 98 nLDF--FGR-LFG--------QDAAERRRRIDEL----LRATGLApfadrpagKLSGGmkqKLGLCC---ALIHDPDLLI 159
|
....
gi 1235141840 155 LDEP 158
Cdd:NF033858 160 LDEP 163
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-192 |
8.68e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 46.00 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAF-KGRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQpLSGTCHIGGIDGRKARLAH------- 73
Cdd:cd03289 3 MTVKDLTAKYtEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKwrkafgv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 74 VPQARHIqfsysvldfvsFGRPLCGGILPSPGSKDlEQSAQMLADLGVSYLESKNINQ-----------ISGGELQMCYI 142
Cdd:cd03289 82 IPQKVFI-----------FSGTFRKNLDPYGKWSD-EEIWKVAEEVGLKSVIEQFPGQldfvlvdggcvLSHGHKQLMCL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1235141840 143 ARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTHFI 192
Cdd:cd03289 150 ARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI 197
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
2-48 |
2.47e-05 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 44.60 E-value: 2.47e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1235141840 2 IEVNNltfaFKGrsptFENISFSLPEGE-ILCILGPNGVGKTTLLKTI 48
Cdd:COG3950 6 LTIEN----FRG----FEDLEIDFDNPPrLTVLVGENGSGKTTLLEAI 45
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-191 |
2.79e-05 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 44.01 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 1 MIEVNNLTFAFKGRsPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGL--YQPLSGTCHIGGIDgrkaRLAHVPQAR 78
Cdd:PRK09580 1 MLSIKDLHVSVEDK-AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKD----LLELSPEDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 79 -----HIQFSYSV-LDFVS---FGRPLCGGILPSPGSKDLE------------QSAQMLADLgvsYLESKNINqISGGEL 137
Cdd:PRK09580 76 agegiFMAFQYPVeIPGVSnqfFLQTALNAVRSYRGQEPLDrfdfqdlmeekiALLKMPEDL---LTRSVNVG-FSGGEK 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1235141840 138 QMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILnTHF 191
Cdd:PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIV-THY 204
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
2-165 |
2.79e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.85 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 2 IEVNNLTFAFKGRSPTFENiSFSLPEGEILCILGPNGVGKTTLLKTITglyqplsgtchIGGIDG--RKARLAHVPQ--- 76
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMA-----------MHAIDGipKNCQILHVEQevv 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 77 ------------------------ARHIQFSYSVLDFVSFGR---PLCGGILPSPGSKDLEQ----------------SA 113
Cdd:PLN03073 246 gddttalqcvlntdiertqlleeeAQLVAQQRELEFETETGKgkgANKDGVDKDAVSQRLEEiykrlelidaytaearAA 325
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1235141840 114 QMLADLGVS-YLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFN 165
Cdd:PLN03073 326 SILAGLSFTpEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
20-180 |
5.06e-05 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 43.00 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 20 NISFSLPEGEILCILGPNGVGKTTLLKTitglyqpLSGTCHIGGIDGRkarlahvpqarhiqfsySVLDfvsfGRPLCGG 99
Cdd:cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDV-------LAGRKTAGVITGE-----------------ILIN----GRPLDKN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 100 ILPSPGSkdLEQSAQMLADLGV--SYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQL 177
Cdd:cd03232 77 FQRSTGY--VEQQDVHSPNLTVreALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL 154
|
...
gi 1235141840 178 SRE 180
Cdd:cd03232 155 ADS 157
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
33-198 |
6.59e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 42.59 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 33 ILGPNGVGKTTLLKTI----TGLYQP-LSGTCHIGGIDGRKARLAHVpqarHIQF------------SYSVLDFVSFGRP 95
Cdd:cd03240 27 IVGQNGAGKTTIIEALkyalTGELPPnSKGGAHDPKLIREGEVRAQV----KLAFenangkkytitrSLAILENVIFCHQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 96 lcggilpspgskdlEQSAQMLADlgvsyleskNINQISGGE------LQMCYIARALVSEPDIVVLDEPESNLDFNN-QA 168
Cdd:cd03240 103 --------------GESNWPLLD---------MRGRCSGGEkvlaslIIRLALAETFGSNCGILALDEPTTNLDEENiEE 159
|
170 180 190
....*....|....*....|....*....|...
gi 1235141840 169 RIIKLLQQLSREKNVTIILNTH---FINHANSI 198
Cdd:cd03240 160 SLAEIIEERKSQKNFQLIVITHdeeLVDAADHI 192
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
109-200 |
8.80e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 43.66 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 109 LEQSAQMLADLGVSYLE-SKNINQISGGELQMCYIARALVSEPDIV--VLDEPESNLDFNNQARIIKLLQQLsREKNVTI 185
Cdd:PRK00635 453 LKSRLSILIDLGLPYLTpERALATLSGGEQERTALAKHLGAELIGItyILDEPSIGLHPQDTHKLINVIKKL-RDQGNTV 531
|
90
....*....|....*...
gi 1235141840 186 ILNTH---FINHANSIAD 200
Cdd:PRK00635 532 LLVEHdeqMISLADRIID 549
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
114-200 |
1.33e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.69 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 114 QMLADLGVSYLE-SKNINQISGGELQMCYIARAL---VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIIL-- 187
Cdd:TIGR00630 811 QTLCDVGLGYIRlGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIeh 890
|
90
....*....|...
gi 1235141840 188 NTHFINHANSIAD 200
Cdd:TIGR00630 891 NLDVIKTADYIID 903
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
13-193 |
2.85e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 41.89 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 13 GRSPTFENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTCHIGGIDGRKARLAHVPQARHIQFSYSVLdfvsF 92
Cdd:PLN03232 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL----F 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 93 GRPLCGGILPSPGSKD------LEQS----AQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNL 162
Cdd:PLN03232 1323 SGTVRFNIDPFSEHNDadlweaLERAhikdVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402
|
170 180 190
....*....|....*....|....*....|...
gi 1235141840 163 DfnnqARIIKLLQQLSRE--KNVTIILNTHFIN 193
Cdd:PLN03232 1403 D----VRTDSLIQRTIREefKSCTMLVIAHRLN 1431
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
19-165 |
7.72e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.54 E-value: 7.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 19 ENISFSLPEGEILCILGPNGVGKTTLLKTITGLYQPLSGTchIGGIDGRKarLAHVpqARHiQFSYSVLDfvsfGRPLCG 98
Cdd:PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE--IGLAKGIK--LGYF--AQH-QLEFLRAD----ESPLQH 397
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1235141840 99 GILPSPgsKDLEQSaqmLADlgvsYLE---------SKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFN 165
Cdd:PRK10636 398 LARLAP--QELEQK---LRD----YLGgfgfqgdkvTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
109-198 |
2.35e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.04 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 109 LEQSAQMLADLGVSYLE-SKNINQISGGELQMCYIARAL---VSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVT 184
Cdd:PRK00635 786 IHEKIHALCSLGLDYLPlGRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865
|
90
....*....|....*.
gi 1235141840 185 IIL--NTHFINHANSI 198
Cdd:PRK00635 866 VIIehNMHVVKVADYV 881
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
148-190 |
5.02e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 37.58 E-value: 5.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1235141840 148 SEPDIVVLDEPESNLDFNNQARIIKLLQQLSREKNVTIILNTH 190
Cdd:pfam13175 345 EKNVILAIEEPEAHLHPQAQRVLIKLLKELANDNKTQVIITTH 387
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
111-207 |
6.30e-03 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 37.41 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 111 QSAQMLADLGVSYLESKNINQISGGELQMCYIARALVSEPDIVVLDEPESNLDFNNQARIIKLLQQLSREkNVTIILNTH 190
Cdd:NF000106 124 RADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQ 202
|
90
....*....|....*..
gi 1235141840 191 FINHANSIADKCLLMKR 207
Cdd:NF000106 203 YMEEAEQLAHELTVIDR 219
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
127-190 |
8.33e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 37.26 E-value: 8.33e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1235141840 127 KNINQISGGELQMCyiARALV-----SEPD-IVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTH 190
Cdd:pfam02463 1073 KNLDLLSGGEKTLV--ALALIfaiqkYKPApFYLLDEIDAALDDQNVSRVANLLKELS--KNAQFIVISL 1138
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
127-190 |
9.09e-03 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 36.29 E-value: 9.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1235141840 127 KNINQISGGELQMcyIARALV-------SEPdIVVLDEPESNLDFNNQARIIKLLQQLSreKNVTIILNTH 190
Cdd:cd03278 109 QRLSLLSGGEKAL--TALALLfaifrvrPSP-FCVLDEVDAALDDANVERFARLLKEFS--KETQFIVITH 174
|
|
| |
