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Conserved domains on  [gi|117269|sp|P07049|]
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RecName: Full=Cryptic plasmid protein B

Protein Classification

MbeB family mobilization protein( domain architecture ID 10521993)

MbeB family mobilization protein similar to Escherichia coli mobilization protein MbeB that interacts with MbeA and MbeC to form the relaxosome, and is essential to promote the specific transfer of the plasmid in the presence of conjugative plasmids

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MbeB_N pfam04837
MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of ...
 1-52 1.17e-11

MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of MbeB/MobB proteins. These proteins are essential for specific plasmid transfer.


:

Pssm-ID: 113603  Cd Length: 52  Bit Score: 57.83  E-value: 1.17e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 117269       1 MSKISDLAKTFEQTSRTEAASIEQQTKADLETLRKNINEALKQSEQKITADI 52
Cdd:pfam04837   1 MSKILDLAKTFEQKSKEQAESTEEMVKSAFEKHEKSVREALKESEKNISDAI 52
PRK10929 super family cl35973
putative mechanosensitive channel protein; Provisional
 96-213 2.91e-03

putative mechanosensitive channel protein; Provisional


The actual alignment was detected with superfamily member PRK10929:

Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 38.11  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117269      96 LDDLKQQRAEAERTLDLLETKTKGLTLENCPVENSK--ATRVCVATEKRMLDAL--AELESN----------------HA 155
Cdd:PRK10929  139 LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQltALQAESAALKALVDELelAQLSANnrqelarlrselakkrSQ 218

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117269     156 AIE---QRMMKALTHLGERLAELEQENTS-LAQQLASLAAELERQSEIRQRQSEILNQPAKR 213
Cdd:PRK10929  219 QLDaylQALRNQLNSQRQREAERALESTElLAEQSGDLPKSIVAQFKINRELSQALNQQAQR 280
 
Name Accession Description Interval E-value
MbeB_N pfam04837
MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of ...
 1-52 1.17e-11

MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of MbeB/MobB proteins. These proteins are essential for specific plasmid transfer.


Pssm-ID: 113603  Cd Length: 52  Bit Score: 57.83  E-value: 1.17e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 117269       1 MSKISDLAKTFEQTSRTEAASIEQQTKADLETLRKNINEALKQSEQKITADI 52
Cdd:pfam04837   1 MSKILDLAKTFEQKSKEQAESTEEMVKSAFEKHEKSVREALKESEKNISDAI 52
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 96-213 2.91e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 38.11  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117269      96 LDDLKQQRAEAERTLDLLETKTKGLTLENCPVENSK--ATRVCVATEKRMLDAL--AELESN----------------HA 155
Cdd:PRK10929  139 LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQltALQAESAALKALVDELelAQLSANnrqelarlrselakkrSQ 218

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117269     156 AIE---QRMMKALTHLGERLAELEQENTS-LAQQLASLAAELERQSEIRQRQSEILNQPAKR 213
Cdd:PRK10929  219 QLDaylQALRNQLNSQRQREAERALESTElLAEQSGDLPKSIVAQFKINRELSQALNQQAQR 280
 
Name Accession Description Interval E-value
MbeB_N pfam04837
MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of ...
 1-52 1.17e-11

MbeB-like, N-term conserved region; This family represents an N-terminal conserved region of MbeB/MobB proteins. These proteins are essential for specific plasmid transfer.


Pssm-ID: 113603  Cd Length: 52  Bit Score: 57.83  E-value: 1.17e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 117269       1 MSKISDLAKTFEQTSRTEAASIEQQTKADLETLRKNINEALKQSEQKITADI 52
Cdd:pfam04837   1 MSKILDLAKTFEQKSKEQAESTEEMVKSAFEKHEKSVREALKESEKNISDAI 52
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 96-213 2.91e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 38.11  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117269      96 LDDLKQQRAEAERTLDLLETKTKGLTLENCPVENSK--ATRVCVATEKRMLDAL--AELESN----------------HA 155
Cdd:PRK10929  139 LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQltALQAESAALKALVDELelAQLSANnrqelarlrselakkrSQ 218

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 117269     156 AIE---QRMMKALTHLGERLAELEQENTS-LAQQLASLAAELERQSEIRQRQSEILNQPAKR 213
Cdd:PRK10929  219 QLDaylQALRNQLNSQRQREAERALESTElLAEQSGDLPKSIVAQFKINRELSQALNQQAQR 280
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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