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Conserved domains on  [gi|82592582|sp|P0ACK5|]
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RecName: Full=Deoxyribose operon repressor

Protein Classification

DNA-binding transcriptional repressor DeoR( domain architecture ID 11484870)

DNA-binding transcriptional repressor DeoR is one of the repressors that regulate the expression of deoCABD genes, which encode nucleotide and deoxy ribonucleotide catabolizing enzymes; also negatively regulates the expression of nupG (a transport protein) and tsx (a pore-forming protein)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


:

Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 551.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    1 METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   81 RAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  161 LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 82592582  241 KYAQTQRIKLMY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 551.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    1 METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   81 RAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  161 LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 82592582  241 KYAQTQRIKLMY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-252 3.30e-66

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 205.75  E-value: 3.30e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   5 REERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN----------NHsapvvllgGYIVLEPRSASHYLLSDQKSR 74
Cdd:COG1349   3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAeleeqgllrrVH--------GGAVLVSSAAAEPPFAERETL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  75 LVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKP 154
Cdd:COG1349  75 NAEEKRAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVG 154

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582 155 IDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCC 234
Cdd:COG1349 155 PLAEEALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAG 234

                       250
                ....*....|....*...
gi 82592582 235 PEDEYVKYAQTQRIKLMY 252
Cdd:COG1349 235 PPPELLEALEEAGVEVIV 252
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-232 1.11e-65

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 201.20  E-value: 1.11e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    76 VEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPI 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 82592582   156 DFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSD 232
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 3.06e-13

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 62.62  E-value: 3.06e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 82592582      8 RIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 551.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    1 METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   81 RAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  161 LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 82592582  241 KYAQTQRIKLMY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-252 3.30e-66

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 205.75  E-value: 3.30e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   5 REERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN----------NHsapvvllgGYIVLEPRSASHYLLSDQKSR 74
Cdd:COG1349   3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAeleeqgllrrVH--------GGAVLVSSAAAEPPFAERETL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  75 LVEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKP 154
Cdd:COG1349  75 NAEEKRAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVG 154

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582 155 IDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCC 234
Cdd:COG1349 155 PLAEEALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAG 234

                       250
                ....*....|....*...
gi 82592582 235 PEDEYVKYAQTQRIKLMY 252
Cdd:COG1349 235 PPPELLEALEEAGVEVIV 252
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-232 1.11e-65

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 201.20  E-value: 1.11e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    76 VEEKRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPI 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 82592582   156 DFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSD 232
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
PRK09802 PRK09802
DeoR family transcriptional regulator;
7-238 6.89e-22

DeoR family transcriptional regulator;


Pssm-ID: 182086 [Multi-domain]  Cd Length: 269  Bit Score: 91.45  E-value: 6.89e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    7 ERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDL---NNHSAPVVLLGGYIVLEPRSASHYLLSDQKSRL-VEEKRRA 82
Cdd:PRK09802  17 ERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLaflEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALnTAMKRSV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   83 AKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLN 162
Cdd:PRK09802  97 AKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQ 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 82592582  163 NFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDE 238
Cdd:PRK09802 177 NYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAD 252
HTH_DeoR pfam08220
DeoR-like helix-turn-helix domain;
8-61 1.25e-15

DeoR-like helix-turn-helix domain;


Pssm-ID: 285436 [Multi-domain]  Cd Length: 57  Bit Score: 68.83  E-value: 1.25e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 82592582     8 RIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLL---GGYIVLEPR 61
Cdd:pfam08220   1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTrthGGAVSNSST 57
PRK10906 PRK10906
DeoR/GlpR family transcriptional regulator;
2-250 1.62e-15

DeoR/GlpR family transcriptional regulator;


Pssm-ID: 182827 [Multi-domain]  Cd Length: 252  Bit Score: 73.74  E-value: 1.62e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    2 ETRREERIGQLLqelKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLL---GGYIVlePRSASHYLLSDQKSRLVEE 78
Cdd:PRK10906   3 QTQRHDAIIELV---KQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILrhhGGAAL--PSSSVNTPWHDRKATQTEE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   79 KRRAAKLAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIF---KPI 155
Cdd:PRK10906  78 KERIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIigeATL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  156 DFqqtLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCP 235
Cdd:PRK10906 158 DF---ISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLP 234

                        250
                 ....*....|....*
gi 82592582  236 EDEYVKYAQTQRIKL 250
Cdd:PRK10906 235 PASVMQVIEDHHVQL 249
srlR PRK10434
DNA-binding transcriptional repressor;
6-232 3.07e-14

DNA-binding transcriptional repressor;


Pssm-ID: 182457 [Multi-domain]  Cd Length: 256  Bit Score: 70.10  E-value: 3.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    6 EERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN--NHSAPVVLLGGYIVLEPRSASHYLlsDQKSRL-VEEKRRA 82
Cdd:PRK10434   4 RQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVilEHAGTVIRTYGGVVLNKEESDPPI--DHKTLInTHKKELI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   83 AKLAATLVEPDQTLFFDCGTTT----PWIIEaIDNeipFTAVCYSLNTFLALKEKPHCRAFL-CGGEFHASNAIFKPIDF 157
Cdd:PRK10434  82 AEAAVSLIHDGDSIILDAGSTVlqmvPLLSR-FNN---ITVMTNSLHIVNALSELDNEQTILmPGGTFRKKSASFHGQLA 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 82592582  158 QQTLNNFCPDIAFYSAAGVHVSKGATCFNlEELPVKHwAMSMAQKHV-LVVDHSKFGKVRPARMGDLKRFDIVVSD 232
Cdd:PRK10434 158 ENAFEHFTFDKLFIGTDGIDLNAGVTTFN-EVYTVSK-AMCNAAREIiLMADSSKFGRKSPNVVCSLEKVDKLITD 231
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 3.06e-13

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 62.62  E-value: 3.06e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 82592582      8 RIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
PRK13509 PRK13509
HTH-type transcriptional regulator UlaR;
8-232 1.87e-08

HTH-type transcriptional regulator UlaR;


Pssm-ID: 184100 [Multi-domain]  Cd Length: 251  Bit Score: 53.47  E-value: 1.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    8 RIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN--NHSAPV--VLLGGYIVLEPRSASHYLLSDQKSRLvEEKRRAA 83
Cdd:PRK13509   6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINklDESGKLkkVRNGAEAITQQRPRWTPMNIHQAQNH-DEKVRIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   84 KLAATLVEPDQTLFFDCGTTTPWI--------IEAIDNEIPftavcyslntfLA--LKEKPHCRAFLCGGEFHASNAIFK 153
Cdd:PRK13509  85 KAASQLCNPGESVVINCGSTAFLLgrelcgkpVQIITNYLP-----------LAnyLIDQEHDSVIIMGGQYNKSQSITL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582  154 PIDfQQTLNNFCPDIAFYS-----AAGVHVSKGATCFNLEELpvkhwaMSMAQKHVLVVDHSKFGKvrpaRMG----DLK 224
Cdd:PRK13509 154 SPQ-GSENSLYAGHWMFTSgkgltADGLYKTDMLTAMAEQKM------LSVVGKLVVLVDSSKIGE----RAGmlfsRAD 222


                 ....*...
gi 82592582  225 RFDIVVSD 232
Cdd:PRK13509 223 QIDMLITG 230
PRK10411 PRK10411
L-fucose operon activator;
1-232 1.41e-05

L-fucose operon activator;


Pssm-ID: 236684 [Multi-domain]  Cd Length: 240  Bit Score: 44.80  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582    1 METRREERIGQLLQelkRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLL-----GGYIVLEPRSASHYLLSDQKSRL 75
Cdd:PRK10411   1 MKAARQQAIVDLLL---NHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILrnhgrAKYIHRQNQDSGDPFHIRLKSHY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82592582   76 VeEKRRAAKLAATLVEPDQTLFFDcGTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPI 155
Cdd:PRK10411  78 A-HKADIAREALAWIEEGMVIALD-ASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNP 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 82592582  156 DFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSD 232
Cdd:PRK10411 156 SLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISD 232
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 3-43 1.23e-03

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 39.29  E-value: 1.23e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 82592582   3 TRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN 43
Cdd:COG2378   1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDID 41
COG3177 COG3177
Fic family protein [Transcription];
1-43 7.43e-03

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 36.97  E-value: 7.43e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 82592582   1 METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLN 43
Cdd:COG3177 255 ARGRLNERQRKLLELLFENPVLTASELAELLGVSRRTARRDLK 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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