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Conserved domains on  [gi|12643268|sp|P17024|]
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RecName: Full=Zinc finger protein 20; AltName: Full=Zinc finger protein KOX13

Protein Classification

KRAB domain-containing zinc finger protein( domain architecture ID 12016853)

KRAB (Kruppel-associated box) domain-containing zinc finger protein (KRAB-ZFP) plays important roles in cell differentiation and organ development and in regulating viral replication and transcription

CATH:  3.30.160.60|1.10.287.1360
Gene Ontology:  GO:0003700|GO:0005515|GO:0008270|GO:0003677|GO:0006355|GO:0001217
PubMed:  22803940|8183940|2023909|8183939|10748030|27867147|28765213|11361095|30718982|10940247
SCOP:  4003583|4002243

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 6-47 6.38e-24

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


:

Pssm-ID: 460171  Cd Length: 42  Bit Score: 94.07  E-value: 6.38e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 12643268     6 SVAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTSVG 47
Cdd:pfam01352   1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSLG 42
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
115-525 7.36e-07

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 51.62  E-value: 7.36e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 115 TGHSSLNTHIRADTGHKSSEYQEYGEN-PYRNKECKKAFSYLDSFQSHDKACTKEKPYD--GKECTETFISHSCIQRHRV 191
Cdd:COG5048   5 SSQSSSSNNSVLSSTPKSTLKSLSNAPrPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQcsYSGCDKSFSRPLELSRHLR 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 192 MHSGDGPYKC-KFCGKAFYFLNLCLIHERIHTGVKPYKCKQCGKAFTRSTTLPVHERTHTGVNADECKECGN-------A 263
Cdd:COG5048  85 THHNNPSDLNsKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSssvntpqS 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 264 FSFPSEIRR---------------HKRSHTGEKPYECKQCGKVFISFSSIQYHKMTHTGEKPYECKQCGKAFRCGSHLQK 328
Cdd:COG5048 165 NSLHPPLPAnslskdpssnlslliSSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQS 244

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 329 HGRTHTGEKPYECRQCGKAFRCTSDLQRHEKTHTE-------DKPYGCKQCGKGFRCASQLQIHERT--HSGE--KPHEC 397
Cdd:COG5048 245 PSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDsssekgfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSC 324

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 398 KE--CGKVFKYFSSLRIHERTHTGEKPHECK--QCGKAF------RYFSSLHIHERTHTgDKPYECKV--CGKAFTCSSS 465
Cdd:COG5048 325 PYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFspllnnEPPQSLQQYKDLKN-DKKSETLSnsCIRNFKRDSN 403

                       410       420       430       440       450       460
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12643268 466 IRYHERTHTGEKPYECK--HCGKAFISNYIRYHE-RTHTGEKPYQCKQCGKAFIRASSCREHE 525
Cdd:COG5048 404 LSLHIITHLSFRPYNCKnpPCSKSFNRHYNLIPHkKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
 
Name Accession Description Interval E-value
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 6-47 6.38e-24

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 94.07  E-value: 6.38e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 12643268     6 SVAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTSVG 47
Cdd:pfam01352   1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSLG 42
KRAB smart00349
krueppel associated box;
7-47 3.62e-23

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 92.66  E-value: 3.62e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 12643268      7 VAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTSVG 47
Cdd:smart00349   1 VTFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLG 41
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 7-45 5.01e-20

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 82.98  E-value: 5.01e-20
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 12643268   7 VAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTS 45
Cdd:cd07765   1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLVS 39
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
115-525 7.36e-07

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 51.62  E-value: 7.36e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 115 TGHSSLNTHIRADTGHKSSEYQEYGEN-PYRNKECKKAFSYLDSFQSHDKACTKEKPYD--GKECTETFISHSCIQRHRV 191
Cdd:COG5048   5 SSQSSSSNNSVLSSTPKSTLKSLSNAPrPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQcsYSGCDKSFSRPLELSRHLR 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 192 MHSGDGPYKC-KFCGKAFYFLNLCLIHERIHTGVKPYKCKQCGKAFTRSTTLPVHERTHTGVNADECKECGN-------A 263
Cdd:COG5048  85 THHNNPSDLNsKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSssvntpqS 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 264 FSFPSEIRR---------------HKRSHTGEKPYECKQCGKVFISFSSIQYHKMTHTGEKPYECKQCGKAFRCGSHLQK 328
Cdd:COG5048 165 NSLHPPLPAnslskdpssnlslliSSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQS 244

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 329 HGRTHTGEKPYECRQCGKAFRCTSDLQRHEKTHTE-------DKPYGCKQCGKGFRCASQLQIHERT--HSGE--KPHEC 397
Cdd:COG5048 245 PSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDsssekgfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSC 324

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 398 KE--CGKVFKYFSSLRIHERTHTGEKPHECK--QCGKAF------RYFSSLHIHERTHTgDKPYECKV--CGKAFTCSSS 465
Cdd:COG5048 325 PYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFspllnnEPPQSLQQYKDLKN-DKKSETLSnsCIRNFKRDSN 403

                       410       420       430       440       450       460
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12643268 466 IRYHERTHTGEKPYECK--HCGKAFISNYIRYHE-RTHTGEKPYQCKQCGKAFIRASSCREHE 525
Cdd:COG5048 404 LSLHIITHLSFRPYNCKnpPCSKSFNRHYNLIPHkKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
409-434 7.97e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 7.97e-04
                          10        20
                  ....*....|....*....|....*.
gi 12643268   409 SLRIHERTHTGEKPHECKQCGKAFRY 434
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
KRAB pfam01352
KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc ...
 6-47 6.38e-24

KRAB box; The KRAB domain (or Kruppel-associated box) is present in about a third of zinc finger proteins containing C2H2 fingers. The KRAB domain is found to be involved in protein-protein interactions. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B. The A box plays an important role in repression by binding to corepressors, while the B box is thought to enhance this repression brought about by the A box. KRAB-containing proteins are thought to have critical functions in cell proliferation and differentiation, apoptosis and neoplastic transformation.


Pssm-ID: 460171  Cd Length: 42  Bit Score: 94.07  E-value: 6.38e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 12643268     6 SVAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTSVG 47
Cdd:pfam01352   1 SVTFEDVAVDFTQEEWALLDPAQRNLYRDVMLENYRNLVSLG 42
KRAB smart00349
krueppel associated box;
7-47 3.62e-23

krueppel associated box;


Pssm-ID: 214630 [Multi-domain]  Cd Length: 61  Bit Score: 92.66  E-value: 3.62e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 12643268      7 VAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTSVG 47
Cdd:smart00349   1 VTFEDVAVYFTQEEWEQLDPAQKNLYRDVMLENYSNLVSLG 41
KRAB_A-box cd07765
KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression ...
 7-45 5.01e-20

KRAB (Kruppel-associated box) domain -A box; The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through recruiting corepressors. A key mechanism appears to be the following: KRAB-AFPs tethered to DNA recruit, via their KRAB domain, the repressor KAP1 (KRAB-associated protein-1, also known as transcription intermediary factor 1 beta , KRAB-A interacting protein , and tripartite motif protein 28). The KAP1/ KRAB-AFP complex in turn recruits the heterochromatin protein 1 (HP1) family, and other chromatin modulating proteins, leading to transcriptional repression through heterochromatin formation.


Pssm-ID: 143639  Cd Length: 40  Bit Score: 82.98  E-value: 5.01e-20
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 12643268   7 VAFEDVAVSFTQEEWALLDPSQKNLYRDVMQETFKNLTS 45
Cdd:cd07765   1 VTFEDVAVYFSQEEWELLDPAQRDLYRDVMLENYENLVS 39
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
115-525 7.36e-07

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 51.62  E-value: 7.36e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 115 TGHSSLNTHIRADTGHKSSEYQEYGEN-PYRNKECKKAFSYLDSFQSHDKACTKEKPYD--GKECTETFISHSCIQRHRV 191
Cdd:COG5048   5 SSQSSSSNNSVLSSTPKSTLKSLSNAPrPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQcsYSGCDKSFSRPLELSRHLR 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 192 MHSGDGPYKC-KFCGKAFYFLNLCLIHERIHTGVKPYKCKQCGKAFTRSTTLPVHERTHTGVNADECKECGN-------A 263
Cdd:COG5048  85 THHNNPSDLNsKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSssvntpqS 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 264 FSFPSEIRR---------------HKRSHTGEKPYECKQCGKVFISFSSIQYHKMTHTGEKPYECKQCGKAFRCGSHLQK 328
Cdd:COG5048 165 NSLHPPLPAnslskdpssnlslliSSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQS 244

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 329 HGRTHTGEKPYECRQCGKAFRCTSDLQRHEKTHTE-------DKPYGCKQCGKGFRCASQLQIHERT--HSGE--KPHEC 397
Cdd:COG5048 245 PSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDsssekgfSLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSC 324

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 398 KE--CGKVFKYFSSLRIHERTHTGEKPHECK--QCGKAF------RYFSSLHIHERTHTgDKPYECKV--CGKAFTCSSS 465
Cdd:COG5048 325 PYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFspllnnEPPQSLQQYKDLKN-DKKSETLSnsCIRNFKRDSN 403

                       410       420       430       440       450       460
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12643268 466 IRYHERTHTGEKPYECK--HCGKAFISNYIRYHE-RTHTGEKPYQCKQCGKAFIRASSCREHE 525
Cdd:COG5048 404 LSLHIITHLSFRPYNCKnpPCSKSFNRHYNLIPHkKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
409-434 7.97e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.97  E-value: 7.97e-04
                          10        20
                  ....*....|....*....|....*.
gi 12643268   409 SLRIHERTHTGEKPHECKQCGKAFRY 434
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
269-294 1.16e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.58  E-value: 1.16e-03
                          10        20
                  ....*....|....*....|....*.
gi 12643268   269 EIRRHKRSHTGEKPYECKQCGKVFIS 294
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
492-517 1.46e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.46e-03
                          10        20
                  ....*....|....*....|....*.
gi 12643268   492 YIRYHERTHTGEKPYQCKQCGKAFIR 517
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
467-490 2.17e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 2.17e-03
                          10        20
                  ....*....|....*....|....
gi 12643268   467 RYHERTHTGEKPYECKHCGKAFIS 490
Cdd:pfam13465   3 KRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
382-406 2.19e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 2.19e-03
                          10        20
                  ....*....|....*....|....*
gi 12643268   382 LQIHERTHSGEKPHECKECGKVFKY 406
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 447-501 2.42e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 40.47  E-value: 2.42e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 12643268 447 GDKPYECKV--CGKAFTCSSSIRYH---------------ERTHTG----EKPYECKHCGKAFIS-NYIRYHeRTHT 501
Cdd:COG5189 346 DGKPYKCPVegCNKKYKNQNGLKYHmlhghqnqklhenpsPEKMNIfsakDKPYRCEVCDKRYKNlNGLKYH-RKHS 421
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 307-390 2.58e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 40.47  E-value: 2.58e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 307 GEKPYECK--QCGKAFRCGSHLQKHgRTHTgekpyecrQCGKAFRCTSDLQRHEKTHTEDKPYGCKQCGKGFRCASQLQI 384
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                ....*.
gi 12643268 385 HeRTHS 390
Cdd:COG5189 417 H-RKHS 421
zf-H2C2_2 pfam13465
Zinc-finger double domain;
325-350 3.21e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 3.21e-03
                          10        20
                  ....*....|....*....|....*.
gi 12643268   325 HLQKHGRTHTGEKPYECRQCGKAFRC 350
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
441-462 4.15e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 4.15e-03
                          10        20
                  ....*....|....*....|..
gi 12643268   441 HERTHTGDKPYECKVCGKAFTC 462
Cdd:pfam13465   5 HMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
217-238 4.44e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 4.44e-03
                          10        20
                  ....*....|....*....|..
gi 12643268   217 HERIHTGVKPYKCKQCGKAFTR 238
Cdd:pfam13465   5 HMRTHTGEKPYKCPECGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 391-474 5.21e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 39.32  E-value: 5.21e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12643268 391 GEKPHECK--ECGKVFKYFSSLRIHERT-HTGEKPHECKQCGKafryfsslhiHERTHTGDKPYECKVCGKAFTCSSSIR 467
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHMLHgHQNQKLHENPSPEK----------MNIFSAKDKPYRCEVCDKRYKNLNGLK 415


                ....*..
gi 12643268 468 YHeRTHT 474
Cdd:COG5189 416 YH-RKHS 421
zf-H2C2_2 pfam13465
Zinc-finger double domain;
299-322 6.33e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.33e-03
                          10        20
                  ....*....|....*....|....
gi 12643268   299 QYHKMTHTGEKPYECKQCGKAFRC 322
Cdd:pfam13465   3 KRHMRTHTGEKPYKCPECGKSFKS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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