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Conserved domains on  [gi|116020|sp|P24485|]
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RecName: Full=Leukocyte surface antigen CD53; AltName: Full=Cell surface glycoprotein CD53; AltName: Full=Leukocyte antigen MRC OX-44; AltName: CD_antigen=CD53

Protein Classification

leukocyte surface antigen CD53( domain architecture ID 13626524)

leukocyte surface antigen CD53 is a tetraspanin family protein that is required for efficient formation of myofibers in regenerating muscle; tetraspanins are transmembrane (TM) glycoproteins with four TM segments that facilitate the interaction of membrane and intracellular signaling molecules (such as integrins, pro-growth factors and their receptors, protein kinase-C) in the formation of membrane signaling microdomains (also referred to as the tetraspanin web)

Gene Symbol:  CD53
Gene Ontology:  GO:0005886
PubMed:  25128561|24832104|15763890|11756464|19709882|16024509
SCOP:  4001512

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CD53_like_LEL cd03164
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. ...
 104-186 1.00e-48

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.


:

Pssm-ID: 239417 [Multi-domain]  Cd Length: 86  Bit Score: 154.18  E-value: 1.00e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGPPSSCPSGA---DVQGCYKKGQAWFHS 180
Cdd:cd03164   1 FVYEKKLNNYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQCCGINGTTDWGSGVPSSCCSSDteyKVEGCYKKLKNWFES 80


                ....*.
gi 116020   181 NFLYIG 186
Cdd:cd03164  81 NFLYTG 86
Tetraspanin pfam00335
Tetraspanin family;
9-208 3.45e-35

Tetraspanin family;


:

Pssm-ID: 459767  Cd Length: 183  Bit Score: 122.81  E-value: 3.45e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020       9 LKYVLFFFNFLFWVCGCCILGFGIHLLVQNTYGILFRNLPFLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVL 88
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLLLTYFVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020      89 LLLILLAEVTLAILLFVYEKKINTLVAEGLNDSIQHYHSD-----NSTRMAWDFIQSQLQCCGvngssdwisgppsscps 163
Cdd:pfam00335  81 LLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDwldlySCLNSALDSLQSEFGCCG----------------- 143

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 116020     164 gadvqGCYKKGQAWFHSNFLYIGIVTICVCVIQVLGMSFALTLNC 208
Cdd:pfam00335 144 -----GCKEKLLEWLRKNLKIIGAGVIALGVIQLLGIILACCLCC 183
 
Name Accession Description Interval E-value
CD53_like_LEL cd03164
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. ...
 104-186 1.00e-48

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.


Pssm-ID: 239417 [Multi-domain]  Cd Length: 86  Bit Score: 154.18  E-value: 1.00e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGPPSSCPSGA---DVQGCYKKGQAWFHS 180
Cdd:cd03164   1 FVYEKKLNNYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQCCGINGTTDWGSGVPSSCCSSDteyKVEGCYKKLKNWFES 80


                ....*.
gi 116020   181 NFLYIG 186
Cdd:cd03164  81 NFLYTG 86
Tetraspanin pfam00335
Tetraspanin family;
9-208 3.45e-35

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 122.81  E-value: 3.45e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020       9 LKYVLFFFNFLFWVCGCCILGFGIHLLVQNTYGILFRNLPFLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVL 88
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLLLTYFVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020      89 LLLILLAEVTLAILLFVYEKKINTLVAEGLNDSIQHYHSD-----NSTRMAWDFIQSQLQCCGvngssdwisgppsscps 163
Cdd:pfam00335  81 LLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDwldlySCLNSALDSLQSEFGCCG----------------- 143

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 116020     164 gadvqGCYKKGQAWFHSNFLYIGIVTICVCVIQVLGMSFALTLNC 208
Cdd:pfam00335 144 -----GCKEKLLEWLRKNLKIIGAGVIALGVIQLLGIILACCLCC 183
 
Name Accession Description Interval E-value
CD53_like_LEL cd03164
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. ...
 104-186 1.00e-48

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.


Pssm-ID: 239417 [Multi-domain]  Cd Length: 86  Bit Score: 154.18  E-value: 1.00e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGPPSSCPSGA---DVQGCYKKGQAWFHS 180
Cdd:cd03164   1 FVYEKKLNNYVKEGLTDSLEQYHKDNNTSEAWDMIQSNLQCCGINGTTDWGSGVPSSCCSSDteyKVEGCYKKLKNWFES 80


                ....*.
gi 116020   181 NFLYIG 186
Cdd:cd03164  81 NFLYTG 86
Tetraspanin pfam00335
Tetraspanin family;
9-208 3.45e-35

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 122.81  E-value: 3.45e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020       9 LKYVLFFFNFLFWVCGCCILGFGIHLLVQNTYGILFRNLPFLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVL 88
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLLSAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLLLTYFVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020      89 LLLILLAEVTLAILLFVYEKKINTLVAEGLNDSIQHYHSD-----NSTRMAWDFIQSQLQCCGvngssdwisgppsscps 163
Cdd:pfam00335  81 LLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDwldlySCLNSALDSLQSEFGCCG----------------- 143

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 116020     164 gadvqGCYKKGQAWFHSNFLYIGIVTICVCVIQVLGMSFALTLNC 208
Cdd:pfam00335 144 -----GCKEKLLEWLRKNLKIIGAGVIALGVIQLLGIILACCLCC 183
tetraspanin_LEL cd03127
Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are ...
 104-181 1.10e-20

Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integrins.


Pssm-ID: 239401 [Multi-domain]  Cd Length: 90  Bit Score: 82.55  E-value: 1.10e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISG---PPSSCPSGADV--------QGCYK 172
Cdd:cd03127   1 FVYRDQLESLVSDTLNDAWDEYYVDDDFQEAMDALQSTFECCGVNGPTDYLDLrllVPSSCCKGTDGncglnlytEGCLE 80


                ....*....
gi 116020   173 KGQAWFHSN 181
Cdd:cd03127  81 KLVDFLRSN 89
NET-5_like_LEL cd03165
Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. ...
 104-181 3.64e-12

Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.


Pssm-ID: 239418 [Multi-domain]  Cd Length: 98  Bit Score: 60.46  E-value: 3.64e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDN--STRMAWDFIQSQLQCCGVNGSSDW--ISGP---PSSC------------PSG 164
Cdd:cd03165   1 FVFREKVDLTAKDDLKEGLELYGTRNnrGLTNAWDITQTEFRCCGVTNYTDWyeVLGEnrvPDSCcqedsqdcgrnpTEL 80

                        90
                ....*....|....*..
gi 116020   165 ADVQGCYKKGQAWFHSN 181
Cdd:cd03165  81 WWKTGCYEKVQQWLVDN 97
CD63_LEL cd03166
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins ...
 104-181 2.18e-10

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.


Pssm-ID: 239419  Cd Length: 99  Bit Score: 55.56  E-value: 2.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGP-------PSSC-------------PS 163
Cdd:cd03166   1 YVFRDKVMSEFNDSFNQMISNYNKTNDFRKILDRMQKDLKCCGANNYTDWENIPsldtdsvPDSCcinvtkgcginfdEK 80

                        90
                ....*....|....*...
gi 116020   164 GADVQGCYKKGQAWFHSN 181
Cdd:cd03166  81 VIHLEGCVTKIEGWLKKN 98
CD151_like_LEL cd03155
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. ...
 104-153 2.69e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and various tumor cell lines; it associates specifically with laminin-binding integrins and strengthens alpha6beta1 integrin-mediated adhesion to laminin-1; CD151 also specifically attenuates adhesion-dependent activation of Ras and correspdonding downstream effects, and is involved in epithelial cell-cell adhesion as a modulator of PKC- and Cdc42-dependent actin cytoskeletal reorganization.


Pssm-ID: 239408 [Multi-domain]  Cd Length: 110  Bit Score: 50.42  E-value: 2.69e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 116020   104 FVYEKKINTLVAEGLNDSIQH-YHSDNSTRM--AWDFIQSQLQCCGVNGSSDW 153
Cdd:cd03155   1 YTYYQQLEDELKESLKRTMQEnYGQSGEEALtlTVDELQQEFKCCGSNNYTDW 53
TM4SF2_6_like_LEL cd03161
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. ...
 104-173 2.92e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.


Pssm-ID: 239414  Cd Length: 104  Bit Score: 50.05  E-value: 2.92e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGP-------PSSC--------------- 161
Cdd:cd03161   1 FVFRHEIKGTFLRTYNEAVSNYNGDDERSDAVDTVQRTLHCCGVENYTDWLNSPyflekgiPLSCcknrsdcspqdlknl 80

                        90
                ....*....|....*
gi 116020   162 ---PSGADVQGCYKK 173
Cdd:cd03161  81 tkaATKVYQQGCFTL 95
CD37_CD82_like_LEL cd03160
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. ...
 122-182 5.03e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptosis and alterations of cell morphology.


Pssm-ID: 239413  Cd Length: 117  Bit Score: 49.69  E-value: 5.03e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116020   122 IQHYHS--DNSTRM-AWDFIQSQLQCCGVNGSSDWISG-----------PPSSCPSGADV-------------------- 167
Cdd:cd03160  20 IQNYGGnpENKTAEeAWDYVQFQLQCCGWTGPQDWTDNsliknsseplyPCSCCNSSATAdsprpskgfceapasldwpv 99

                        90
                ....*....|....*..
gi 116020   168 --QGCYKKGQAWFHSNF 182
Cdd:cd03160 100 yqEGCMEKLQSWLNENL 116
TM4SF8_like_LEL cd03163
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. ...
 104-161 5.75e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.


Pssm-ID: 239416  Cd Length: 105  Bit Score: 49.34  E-value: 5.75e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGP----------PSSC 161
Cdd:cd03163   2 YVYRAKVEDELNPSIDKVFNKYNGTNAESRAVDYLQRQLQCCGIHNYTDWENTPwfkesknnsvPLSC 69
uroplakin_I_like_LEL cd03156
Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. ...
 124-154 3.80e-06

Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are maturation facilitators. They trigger conformational changes in their single-transmembrane-domain binding partner proteins uroplakin II and IIIa, which in turn may lead to ER-exit, stabilization, and cell-surface expression.


Pssm-ID: 239409  Cd Length: 114  Bit Score: 44.45  E-value: 3.80e-06
                        10        20        30
                ....*....|....*....|....*....|....*
gi 116020   124 HYHSDNST----RMAWDFIQSQLQCCGVNGSSDWI 154
Cdd:cd03156  20 NYGNYNSTgdaiTSTWNRVMIELKCCGVNGPTDFV 54
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 104-153 4.05e-06

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


Pssm-ID: 239411  Cd Length: 119  Bit Score: 44.60  E-value: 4.05e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDW 153
Cdd:cd03158   1 FIFSNQTIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDW 50
TM4SF9_like_LEL cd03159
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. ...
 104-153 7.62e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.


Pssm-ID: 239412 [Multi-domain]  Cd Length: 121  Bit Score: 40.87  E-value: 7.62e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDW 153
Cdd:cd03159   1 FVFKDWIKDQLTEFLNNNIRAYRDDIDLQNLIDFLQEYWQCCGARGPDDW 50
oculospanin_like_LEL cd03167
Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. ...
 117-170 5.89e-04

Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.


Pssm-ID: 239420  Cd Length: 120  Bit Score: 38.60  E-value: 5.89e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 116020   117 GLNDSIQHYHSDNSTRMAWDFIQSQLQCCGVNGSSDWISGPPSSCpSGADVQGC 170
Cdd:cd03167  14 TLRLAIAHYQDDPDLRFLIDQVQLGLQCCGASSYQDWQQNLYFNC-SSPGVQAC 66
TM4SF3_like_LEL cd03154
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. ...
 101-161 8.60e-04

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.


Pssm-ID: 239407 [Multi-domain]  Cd Length: 100  Bit Score: 37.40  E-value: 8.60e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116020   101 ILLFVYEKKINtlvaEGLNDSIQH-----YHSDNSTRMAWDFIQSQLQCCG-VNGSSDWISGPPSSC 161
Cdd:cd03154   2 IVGAVYKPKIE----NELKEKNTKllsllGQNAKSVKKSLEKFQKELKCCGlVNGADDWGNDIPASC 64
TM4SF12_like_LEL cd03157
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. ...
 132-179 5.86e-03

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).


Pssm-ID: 239410  Cd Length: 103  Bit Score: 35.29  E-value: 5.86e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 116020   132 RMAWDFIQSQLQCCGVNGSSDWIS-----GPPSSCPSGaDVQGCYKkgQAWFH 179
Cdd:cd03157  32 THAWNSFQTEFKCCGVIYFTDWLEmtemeWPPDSCCSN-QYPGCAR--QAHYN 81
peripherin_like_LEL cd03162
Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. ...
 104-153 6.89e-03

Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to hereditary retinal dystrophies, which typically exhibit a wide phenotypic spectrum.


Pssm-ID: 239415  Cd Length: 143  Bit Score: 35.87  E-value: 6.89e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 116020   104 FVYEKKINTLVAEGLNDSIQHYHSDNSTRMAW-----DFIQSQLQCCGVNGSSDW 153
Cdd:cd03162   1 FIMRGSLEESLKTGLKNAMKFYKDTDTPGRCFlkktiDMLQIEFQCCGNNGYRDW 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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