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Conserved domains on  [gi|121461|sp|P28721|]
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RecName: Full=Protein GltF; Flags: Precursor

Protein Classification

DUF1120 domain-containing protein( domain architecture ID 10534930)

DUF1120 domain-containing protein similar to Escherichia coli uncharacterized protein YhcF and protein GltF that is involved in induction of the so-called NTR enzymes in response to nitrogen deprivation, as well as in glutamate biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1120 pfam06551
Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial ...
 33-146 1.60e-45

Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial proteins of unknown function.


:

Pssm-ID: 368970  Cd Length: 116  Bit Score: 148.56  E-value: 1.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      33 LTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTgksnKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTS 112
Cdd:pfam06551   1 LKVTGELTPGACTPELSGGGVVDFGTHHVSALSPT----KLNQLGTKNITLTITCTAPTKIAWTATDNRQDSIVALNDTS 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 121461     113 YIEKAYDTLVD------MKGTKNAFGLGSAPNGQKIGAAS 146
Cdd:pfam06551  77 YIAKVYDILNDlngggyMSGTTNAFGLGKTPDGQKIGAYS 116
 
Name Accession Description Interval E-value
DUF1120 pfam06551
Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial ...
 33-146 1.60e-45

Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 368970  Cd Length: 116  Bit Score: 148.56  E-value: 1.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      33 LTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTgksnKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTS 112
Cdd:pfam06551   1 LKVTGELTPGACTPELSGGGVVDFGTHHVSALSPT----KLNQLGTKNITLTITCTAPTKIAWTATDNRQDSIVALNDTS 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 121461     113 YIEKAYDTLVD------MKGTKNAFGLGSAPNGQKIGAAS 146
Cdd:pfam06551  77 YIAKVYDILNDlngggyMSGTTNAFGLGKTPDGQKIGAYS 116
PRK15303 PRK15303
hypothetical protein; Provisional
 4-254 5.07e-22

hypothetical protein; Provisional


Pssm-ID: 185203  Cd Length: 229  Bit Score: 90.82  E-value: 5.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      4 KKNLTTAAICAALSVaafSAMATDSTDTeLTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTGKSnklvQLGRKNSTL 83
Cdd:PRK15303   2 KKLLIATSVIIGLST---SAQAVESTAV-LKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETN----QLGYKDITL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461     84 NITCTAPTLIAVTSKDNRQSTIVALNdtsyIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNggihaaddtg 163
Cdd:PRK15303  74 TIQCLAPAKVGWTVTDNHGDSATTLT----IDNATFGGQNNRIPNYQLGLGKTADGIKIGAYGLSIDANN---------- 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461    164 eIPVDLIQTDHWSA--ATPTWKASSNGAFCSLTSCSAIERGYSVAKtgELTPVAITAVTFPLLIDAAVNDNTILGSDETI 241
Cdd:PRK15303 140 -STADGVKTKMVASsdSNPGVWALASNEYVALTNTFPTRTTYSVGD--GNGPAAFTTATFPIRVAAAIQGTDTLAITDNT 216

                        250
                 ....*....|...
gi 121461    242 KLDGNVTISVQYL 254
Cdd:PRK15303 217 TLDGQATFTLVYL 229
 
Name Accession Description Interval E-value
DUF1120 pfam06551
Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial ...
 33-146 1.60e-45

Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 368970  Cd Length: 116  Bit Score: 148.56  E-value: 1.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      33 LTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTgksnKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTS 112
Cdd:pfam06551   1 LKVTGELTPGACTPELSGGGVVDFGTHHVSALSPT----KLNQLGTKNITLTITCTAPTKIAWTATDNRQDSIVALNDTS 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 121461     113 YIEKAYDTLVD------MKGTKNAFGLGSAPNGQKIGAAS 146
Cdd:pfam06551  77 YIAKVYDILNDlngggyMSGTTNAFGLGKTPDGQKIGAYS 116
PRK15303 PRK15303
hypothetical protein; Provisional
 4-254 5.07e-22

hypothetical protein; Provisional


Pssm-ID: 185203  Cd Length: 229  Bit Score: 90.82  E-value: 5.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      4 KKNLTTAAICAALSVaafSAMATDSTDTeLTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTGKSnklvQLGRKNSTL 83
Cdd:PRK15303   2 KKLLIATSVIIGLST---SAQAVESTAV-LKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETN----QLGYKDITL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461     84 NITCTAPTLIAVTSKDNRQSTIVALNdtsyIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNggihaaddtg 163
Cdd:PRK15303  74 TIQCLAPAKVGWTVTDNHGDSATTLT----IDNATFGGQNNRIPNYQLGLGKTADGIKIGAYGLSIDANN---------- 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461    164 eIPVDLIQTDHWSA--ATPTWKASSNGAFCSLTSCSAIERGYSVAKtgELTPVAITAVTFPLLIDAAVNDNTILGSDETI 241
Cdd:PRK15303 140 -STADGVKTKMVASsdSNPGVWALASNEYVALTNTFPTRTTYSVGD--GNGPAAFTTATFPIRVAAAIQGTDTLAITDNT 216

                        250
                 ....*....|...
gi 121461    242 KLDGNVTISVQYL 254
Cdd:PRK15303 217 TLDGQATFTLVYL 229
PRK15302 PRK15302
hypothetical protein; Provisional
 4-254 8.27e-22

hypothetical protein; Provisional


Pssm-ID: 185202 [Multi-domain]  Cd Length: 229  Bit Score: 90.52  E-value: 8.27e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461      4 KKNLTTAAIcaALSVAAFSAMAtdSTDTELTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTGKSnklvQLGRKNSTL 83
Cdd:PRK15302   2 KKILLITAI--AASFATTSVNA--DTTAVLKVTGQLVVGGCTPELSGGGVVDYGTIRLATLSATDVN----QLGTKDVSL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461     84 NITCTAPTLIAVTSKDNRQSTIVALNDTSyIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNggiHAADDTG 163
Cdd:PRK15302  74 SISCPSATKAAWTITDDRADTHPGASVIS-IANGDMTNGIVSDTTMSYGVGKTTEGVKIGAFSIYTDTAN---VTADGVK 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121461    164 EIPVdliqtdHWSAATPTWKASSNGafcslTSCSAIERGYSVAKTGELTPVAITAVTFPLLIDAAVNDNTILGSDETIKL 243
Cdd:PRK15302 150 SDAI------SGTVDSPVWQKSTTG-----IIKNGNMEMFTVATKGTTEPVPYTLAIFPLKTSLAIQNTATLAITDDTDL 218

                        250
                 ....*....|.
gi 121461    244 DGNVTISVQYL 254
Cdd:PRK15302 219 DGQATITLKYL 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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