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Conserved domains on  [gi|417372|sp|P32832|]
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RecName: Full=Chromatin structure-remodeling complex subunit RSC7; AltName: Full=Nuclear protein localization protein 6; AltName: Full=Remodel the structure of chromatin complex subunit 7

Protein Classification

chromatin structure-remodeling complex subunit RSC7( domain architecture ID 10554407)

chromatin structure-remodeling complex (RSC) subunit RSC7 is a component of the RSC, which is involved in transcription regulation and nucleosome positioning

Gene Ontology:  GO:0006368|GO:0006337|GO:0006338|GO:0031490|GO:0016586

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CRC_subunit pfam08624
Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit ...
 121-253 3.88e-78

Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit of chromatin remodelling complexes. Saccharomyces cerevisiae Swiss:P32832 and its paralogue Swiss:P43554 have been identified as subunits of the RSC chromatin remodelling complex, and SWI/SNF chromatin remodelling complex respectively.


:

Pssm-ID: 430112  Cd Length: 134  Bit Score: 238.58  E-value: 3.88e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417372     121 VNEEYVLP-DDPEGETKITADGDLLGGREFLVRTFTLTEKGNRKFMLATEPARIVGFRDSYLFFQTHPNLYKFILNQTQK 199
Cdd:pfam08624   1 ENDEYVLPkDDPEGETKIDKNGRLLGGREYLFRTFTLPGRGERLYMLSTDLARALGFRDSYLFFRKHPQLYKLIATQEEK 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 417372     200 NDLIDRGVLPYSYRNRQIALVTARGVFKEFGAKIIRGGKHITDDYYASELRTKG 253
Cdd:pfam08624  81 DDLIERGLLPSSYRSRQITLVTARSVFREFGARIIVGGKRVIDDYWEQKAREQG 134
 
Name Accession Description Interval E-value
CRC_subunit pfam08624
Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit ...
 121-253 3.88e-78

Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit of chromatin remodelling complexes. Saccharomyces cerevisiae Swiss:P32832 and its paralogue Swiss:P43554 have been identified as subunits of the RSC chromatin remodelling complex, and SWI/SNF chromatin remodelling complex respectively.


Pssm-ID: 430112  Cd Length: 134  Bit Score: 238.58  E-value: 3.88e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417372     121 VNEEYVLP-DDPEGETKITADGDLLGGREFLVRTFTLTEKGNRKFMLATEPARIVGFRDSYLFFQTHPNLYKFILNQTQK 199
Cdd:pfam08624   1 ENDEYVLPkDDPEGETKIDKNGRLLGGREYLFRTFTLPGRGERLYMLSTDLARALGFRDSYLFFRKHPQLYKLIATQEEK 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 417372     200 NDLIDRGVLPYSYRNRQIALVTARGVFKEFGAKIIRGGKHITDDYYASELRTKG 253
Cdd:pfam08624  81 DDLIERGLLPSSYRSRQITLVTARSVFREFGARIIVGGKRVIDDYWEQKAREQG 134
 
Name Accession Description Interval E-value
CRC_subunit pfam08624
Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit ...
 121-253 3.88e-78

Chromatin remodelling complex Rsc7/Swp82 subunit; This family has been identified as a subunit of chromatin remodelling complexes. Saccharomyces cerevisiae Swiss:P32832 and its paralogue Swiss:P43554 have been identified as subunits of the RSC chromatin remodelling complex, and SWI/SNF chromatin remodelling complex respectively.


Pssm-ID: 430112  Cd Length: 134  Bit Score: 238.58  E-value: 3.88e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 417372     121 VNEEYVLP-DDPEGETKITADGDLLGGREFLVRTFTLTEKGNRKFMLATEPARIVGFRDSYLFFQTHPNLYKFILNQTQK 199
Cdd:pfam08624   1 ENDEYVLPkDDPEGETKIDKNGRLLGGREYLFRTFTLPGRGERLYMLSTDLARALGFRDSYLFFRKHPQLYKLIATQEEK 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 417372     200 NDLIDRGVLPYSYRNRQIALVTARGVFKEFGAKIIRGGKHITDDYYASELRTKG 253
Cdd:pfam08624  81 DDLIERGLLPSSYRSRQITLVTARSVFREFGARIIVGGKRVIDDYWEQKAREQG 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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