NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|731620|sp|P38727|]
View 

RecName: Full=DUP240 protein DFP4

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUP super family cl02924
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


The actual alignment was detected with superfamily member pfam00674:

Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 731620     103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 731620     103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Name Accession Description Interval E-value
DUP pfam00674
DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot ...
 103-170 8.48e-14

DUP family; This family consists of several yeast proteins of unknown functions. Swiss-prot annotates these as belonging to the DUP family. Several members of this family contain an internal duplication of this region.


Pssm-ID: 395546  Cd Length: 96  Bit Score: 65.01  E-value: 8.48e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 731620     103 RCLDDDCKFKLLAEVITHKPNMDLSTWDRIAYDMNQFVYDRRICADRSFFYDGSYCYQVFKKLVATPY 170
Cdd:pfam00674  25 SVSDEHFKMQLLSEIITRKPAVDGKEWDTIAYNMNQYLFENKLWKTPYYFYDGIDCQEFFRRLILGPL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH