|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
585-804 |
3.85e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.02 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 585 HFLSRINLPLRIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHA 664
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 665 LKARLFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLG 743
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRaLALNPDNA----EALFNLGNLLLALGRLEEALAALRRALALNPDF-----AEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 729648 744 VAYVKCDQFEKAEEAFEQMLydKHNANQVELiyyHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG3914 154 EALRRLGRLEEAIAALRRAL--ELDPDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
167-665 |
2.31e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 61.19 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 167 LPSRWSGRFIGRSFDMEAIRQWMLSPSPVCLITGWAGMGKTTIALEAAYSCVDDTS--VWpafnsiiWV------SADwk 238
Cdd:COG3903 150 PPPAPLAALARRAAALAAAARALLSAARLVTLTGPGGVGKTRLALEVAHRLADRFPdgVW-------FVdlagvtDPA-- 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 239 glsfsDFLNTIAYQLGRKEQIDKSinvkrfvVRNALANYTREKPILLIVDS----IDTAERDIHEFITSLPqGVKVLLTA 314
Cdd:COG3903 221 -----LVLAAVARALGVRDAPGRD-------PAARLRAALADRRLLLVLDNcehvVDAAAALVRPLLPAAP-GLRVLATS 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 315 REnvkqtyresfgemtAIQLSGldqtdaheffqqEVHHCLQTCNLPRKREKLE-----QLLHLSSDLKNEFISATAGNPK 389
Cdd:COG3903 288 RE--------------PLGLPG------------ERVLPLPPLAVPPPGAEALaseavALFVERAGAARPGFALDAAEAA 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 390 A----------MALSI----AYMsdDDIPAQQLIHELGkagysllELFEFL-----------------FGRTWDRCNEDT 438
Cdd:COG3903 342 AvaeicrrldgLPLAIelaaARL--RTLSLAELAARLD-------DRLRLLtggrrdapprhrtlraaLDWSYDLLSPAE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 439 RKLWQTLCFFskpPDEKSLAAAA----GLDARRFHYAMEQMRSYALIQPERSQGRTQYLAHQTVVAYGEQHLSEQHEYEk 514
Cdd:COG3903 413 RRLLRRLSVF---PGGFTLEAAEavcgGDGPADVLDLLAALVDKSLLEVEGGGGGPRYRLLETVREYAAERLAEAGERA- 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 515 EARNRWAHYYIDYAETHLKR-EQPNSIYWsyllgrnLDQMKQEWPNILKVIQWASETEQKEILIELITRISHFLsrINLP 593
Cdd:COG3903 489 AARRRHADYYLALAERAAAElRGPDQLAW-------LARLDAEHDNLRAALRWALAHGDAELALRLAAALAPFW--FLRG 559
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 729648 594 LRIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHAL 665
Cdd:COG3903 560 LLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAA 631
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
167-315 |
6.28e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 49.92 E-value: 6.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 167 LPSRwSGRFIGRSFDMEAIRQWMLSPSPVCL---ITGWAGMGKTTIALE------AAYSCvddtsVWpafnsiiWVSADW 237
Cdd:NF040586 1 VPPR-NPNFTGREELLERLRDQLRSGGAAVVpqaLHGLGGVGKTQLALEyahrfrADYDL-----VW-------WIPADQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 238 KGL---SFSDflntIAYQLGRKEQIDksiNVKRFV--VRNALANYTREKPILLIVDSIDTAErDIHEFitsLPQGVK--V 310
Cdd:NF040586 68 PELvraSLAE----LARRLGLPLGPD---DVDEAAraVLDALRRGEPYRRWLLVFDNADDPE-DLRDL---LPTGGPghV 136
|
....*
gi 729648 311 LLTAR 315
Cdd:NF040586 137 LITSR 141
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
178-427 |
1.25e-05 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 47.37 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 178 RSFDMEAIRQW-MLSPSP-VCLITGWAGMGKTTIALEAAYscvDDTSVWPAFNSIIWVSaDWKGLSFSDFLNTIAYQLGR 255
Cdd:pfam00931 1 REDMVEKVIGKlSEKDEPgIVGIHGMGGVGKTTLAAQIFN---DFDEVEGHFDSVAWVV-VSKTFTISTLQQTILQNLGL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 256 KEQIDKSINVKRFVVRnaLANYTREKPILLIVDSIDTaERDIHEFITSLP---QGVKVLLTAR-----ENVKQTYresfg 327
Cdd:pfam00931 77 SEDDWDNKEEGELARK--IRRALLTKRFLLVLDDVWD-EEDWDKIGIPLPdreNGCRVLLTTRseevaGRVGGPS----- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 328 emTAIQLSGLDQTDAHEFFQQEV-HHCLQTCnlprkrEKLEqllhlssDLKNEFISATAGNPKAMALSIAYMSDDDIPAQ 406
Cdd:pfam00931 149 --DPHEVELLEPDEAWELFENKVfPKTLGEC------ELLE-------DVAKEIVEKCRGLPLALKVLGGLLSCKKTVEE 213
|
250 260
....*....|....*....|....*..
gi 729648 407 --QLIHELGKAG----YSLLELFEFLF 427
Cdd:pfam00931 214 wkHVYDVLQSELksnsYSLNSVRSILQ 240
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
666-819 |
3.57e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 3.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 666 KARLFLKDGQQEKAETILNEIENqpISPTiQHRVLLVRGDLSFARGYHVEAIQLYEAANEISStyggeKTIEAYFNLGVA 745
Cdd:TIGR02917 165 LAQLALAENRFDEARALIDEVLT--ADPG-NVDALLLKGDLLLSLGNIELALAAYRKAIALRP-----NNIAVLLALATI 236
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 729648 746 YVKCDQFEKAEEAFEQMLYDKHNANQVeliyyHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVE 819
Cdd:TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLA-----HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
192-299 |
2.94e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 192 PSPVCLITGWAGMGKTTIALEAAYSCVddtsvwPAFNSIIWVSADWkglsFSDFLNTIAYQLGRKEQIDKSINVKRFVVR 271
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG------PPGGGVIYIDGED----ILEEVLDQLLLIIVGGKKASGSGELRLRLA 70
|
90 100
....*....|....*....|....*...
gi 729648 272 NALANYtrEKPILLIVDSIDTAERDIHE 299
Cdd:smart00382 71 LALARK--LKPDVLILDEITSLLDAEQE 96
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
698-761 |
9.68e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 9.68e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 729648 698 RVLLVRGDLSFARGYHVEAIQLYEAANEISSTYGGEK---TIEAYFNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhplTATTLLNLGRLYLELGRYEEALELLER 70
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
736-761 |
9.80e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 9.80e-03
10 20
....*....|....*....|....*.
gi 729648 736 IEAYFNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEK 26
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
585-804 |
3.85e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.02 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 585 HFLSRINLPLRIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHA 664
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 665 LKARLFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLG 743
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRaLALNPDNA----EALFNLGNLLLALGRLEEALAALRRALALNPDF-----AEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 729648 744 VAYVKCDQFEKAEEAFEQMLydKHNANQVELiyyHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG3914 154 EALRRLGRLEEAIAALRRAL--ELDPDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
615-824 |
1.03e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.72 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 615 EAYFRIdtsGWALMEVNDLDGALQQIEAGLKIleQSDAHDAYdlkvwghALKARLFLKDGQQEKAETILNE-IENQPISP 693
Cdd:COG0457 9 EAYNNL---GLAYRRLGRYEEAIEDYEKALEL--DPDDAEAL-------YNLGLAYLRLGRYEEALADYEQaLELDPDDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 694 TIQHRvllvRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLGVAYVKCDQFEKAEEAFEQMLydkhnANQVE 773
Cdd:COG0457 77 EALNN----LGLALQALGRYEEALEDYDKALELDPDD-----AEALYNLGLALLELGRYDEAIEAYERAL-----ELDPD 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 729648 774 LIYYHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVERLARA 824
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
659-804 |
2.06e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 2.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 659 KVWGHALKARLFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIE 737
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKaLELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDE-----PE 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 729648 738 AYFNLGVAYVKCDQFEKAEEAFEQMLydKHNANQVEliyYHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKAL--KLDPEHPE---AYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
622-827 |
7.45e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 7.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 622 TSGWALMEVNDLdgALQQIEAGLKILEQSDAHDAYDLKVwgHALKARLFLKDGQQEKAETILNE-IENQPISPTIQHRVl 700
Cdd:COG2956 8 ALGWYFKGLNYL--LNGQPDKAIDLLEEALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKlLERDPDRAEALLEL- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 701 lvrGDLSFARGYHVEAIQLYEAANEISstyggEKTIEAYFNLGVAYVKCDQFEKAEEAFEQMLydkhnANQVELIYYHYG 780
Cdd:COG2956 83 ---AQDYLKAGLLDRAEELLEKLLELD-----PDDAEALRLLAEIYEQEGDWEKAIEVLERLL-----KLGPENAHAYCE 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 729648 781 MAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVERLARATKE 827
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
167-665 |
2.31e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 61.19 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 167 LPSRWSGRFIGRSFDMEAIRQWMLSPSPVCLITGWAGMGKTTIALEAAYSCVDDTS--VWpafnsiiWV------SADwk 238
Cdd:COG3903 150 PPPAPLAALARRAAALAAAARALLSAARLVTLTGPGGVGKTRLALEVAHRLADRFPdgVW-------FVdlagvtDPA-- 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 239 glsfsDFLNTIAYQLGRKEQIDKSinvkrfvVRNALANYTREKPILLIVDS----IDTAERDIHEFITSLPqGVKVLLTA 314
Cdd:COG3903 221 -----LVLAAVARALGVRDAPGRD-------PAARLRAALADRRLLLVLDNcehvVDAAAALVRPLLPAAP-GLRVLATS 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 315 REnvkqtyresfgemtAIQLSGldqtdaheffqqEVHHCLQTCNLPRKREKLE-----QLLHLSSDLKNEFISATAGNPK 389
Cdd:COG3903 288 RE--------------PLGLPG------------ERVLPLPPLAVPPPGAEALaseavALFVERAGAARPGFALDAAEAA 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 390 A----------MALSI----AYMsdDDIPAQQLIHELGkagysllELFEFL-----------------FGRTWDRCNEDT 438
Cdd:COG3903 342 AvaeicrrldgLPLAIelaaARL--RTLSLAELAARLD-------DRLRLLtggrrdapprhrtlraaLDWSYDLLSPAE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 439 RKLWQTLCFFskpPDEKSLAAAA----GLDARRFHYAMEQMRSYALIQPERSQGRTQYLAHQTVVAYGEQHLSEQHEYEk 514
Cdd:COG3903 413 RRLLRRLSVF---PGGFTLEAAEavcgGDGPADVLDLLAALVDKSLLEVEGGGGGPRYRLLETVREYAAERLAEAGERA- 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 515 EARNRWAHYYIDYAETHLKR-EQPNSIYWsyllgrnLDQMKQEWPNILKVIQWASETEQKEILIELITRISHFLsrINLP 593
Cdd:COG3903 489 AARRRHADYYLALAERAAAElRGPDQLAW-------LARLDAEHDNLRAALRWALAHGDAELALRLAAALAPFW--FLRG 559
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 729648 594 LRIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHAL 665
Cdd:COG3903 560 LLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAA 631
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
660-827 |
7.93e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 7.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 660 VWGHALKARLFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEA 738
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKaLELDPDDA----EALYNLGLAYLRLGRYEEALADYEQALELDPDD-----AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 739 YFNLGVAYVKCDQFEKAEEAFEQMLydkhnANQVELIYYHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEV 818
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKAL-----ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
....*....
gi 729648 819 ERLARATKE 827
Cdd:COG0457 154 LEKLGRYEE 162
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
698-821 |
4.62e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 4.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 698 RVLLVRGDLSFARGYHVEAIQLYEAANEISStyggeKTIEAYFNLGVAYVKCDQFEKAEEAFEQMLydKHNANQVEliyY 777
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDP-----DNADALLDLAEALLAAGDTEEAEELLERAL--ALDPDNPE---A 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 729648 778 HYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVERL 821
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
191-727 |
5.41e-08 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 56.74 E-value: 5.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 191 SPSPVCLITGWAGMGKTTIALEAAYSCVDDTSVWPAFnsI-IWVS-ADWKGLsfSDFLNTIAYQLGRKEQIDKsinvkrf 268
Cdd:COG5635 178 AKKKRLLILGEPGSGKTTLLRYLALELAERYLDAEDP--IpILIElRDLAEE--ASLEDLLAEALEKRGGEPE------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 269 vvrNALANYTREKPILLIVDSID----TAERD-----IHEFITSLPQgVKVLLTARENVKQtyRESFGEMTAIQLSGLDQ 339
Cdd:COG5635 247 ---DALERLLRNGRLLLLLDGLDevpdEADRDevlnqLRRFLERYPK-ARVIITSRPEGYD--SSELEGFEVLELAPLSD 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 340 TDAHEFFQQEVHHclqtcnLPRKREKLEQLLHLSSDLKnEFisatAGNP---KAMALsiAYMSDDDIPAQQlihelgkag 416
Cdd:COG5635 321 EQIEEFLKKWFEA------TERKAERLLEALEENPELR-EL----ARNPlllTLLAL--LLRERGELPDTR--------- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 417 yslLELFEflfgrtwdrcnedtrKLWQTLcfFSKPPDEKSLAAAAGLDARRFHYAMEQMrSYALIQpersQGRTQyLAHQ 496
Cdd:COG5635 379 ---AELYE---------------QFVELL--LERWDEQRGLTIYRELSREELRELLSEL-ALAMQE----NGRTE-FARE 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 497 TVVAYGEQHLSEQHEYEKearnrwahyYIDYAETH---LKREQPNSIYWS------YLLGRNL-DQMKQEWPNILkvIQW 566
Cdd:COG5635 433 ELEEILREYLGRRKDAEA---------LLDELLLRtglLVERGEGRYSFAhrsfqeYLAARALvEELDEELLELL--AEH 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 567 ASETEQKEILIELITRISHFLSRINLplrIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKI 646
Cdd:COG5635 502 LEDPRWREVLLLLAGLLDDVKQIKEL---IDALLARDDAAALALAAALLLALLLALALLALLALLLLLRLLLALLALLLL 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 647 LEQSDAHDAYDLKVWGHALKARLFLKDGQQEKAETILNEIENQPISPTIQHRVLLVRGDLSFARGYHVEAIQLYEAANEI 726
Cdd:COG5635 579 ALLLLLLLALLLALLALDLGLAALLLLLLLLLLLLLLLALALLLALLLLLLLLLLAELLLLALLALVLLSLLLASRLLLI 658
|
.
gi 729648 727 S 727
Cdd:COG5635 659 T 659
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
696-804 |
8.10e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.24 E-value: 8.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 696 QHRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLGVAYVKCDQFEKAEEAFEQMLydkhnANQVELI 775
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-----AEALYNLGLAYLRLGRYEEALADYEQAL-----ELDPDDA 76
|
90 100
....*....|....*....|....*....
gi 729648 776 YYHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
615-804 |
1.05e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.35 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 615 EAYFRIdtsGWALMEVNDLDGALqqieaglKILEQSDAHDAYDLKVWghALKARLFLKDGQQEKAETILNE-IENQPISP 693
Cdd:COG2956 77 EALLEL---AQDYLKAGLLDRAE-------ELLEKLLELDPDDAEAL--RLLAEIYEQEGDWEKAIEVLERlLKLGPENA 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 694 TIQHRvllvRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLGVAYVKCDQFEKAEEAFEQMLydKHNANQVE 773
Cdd:COG2956 145 HAYCE----LAELYLEQGDYDEAIEALEKALKLDPDC-----ARALLLLAELYLEQGDYEEAIAALERAL--EQDPDYLP 213
|
170 180 190
....*....|....*....|....*....|.
gi 729648 774 LiyyHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG2956 214 A---LPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
601-824 |
2.84e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.62 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 601 KAADAAHHLGQHTREAYFRIdtsGWALMEVNDLDGALQQIEAGLKIleqsDAHDAydlkvWGHALKARLFLKDGQQEKAE 680
Cdd:COG0457 29 EDYEKALELDPDDAEALYNL---GLAYLRLGRYEEALADYEQALEL----DPDDA-----EALNNLGLALQALGRYEEAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 681 TILNE-IENQPISPTIqhrvLLVRGDLSFARGYHVEAIQLYEAANEISSTYGgektiEAYFNLGVAYVKCDQFEKAEEAF 759
Cdd:COG0457 97 EDYDKaLELDPDDAEA----LYNLGLALLELGRYDEAIEAYERALELDPDDA-----DALYNLGIALEKLGRYEEALELL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 729648 760 EQMLYDKHNANQVELIYYHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVERLARA 824
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
647-804 |
3.83e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 3.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 647 LEQSDAHDAYDLKVWGHALKARLFLKDGQQEKAETILNEIENQPISPTIQHRVLLVRGDlsfargyHVEAIQLYEAANEI 726
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD-------FEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 729648 727 SSTYggektIEAYFNLGVAYVKCDQFEKAEEAFEQMLydkhnANQVELIYYHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG5010 84 DPNN-----PELYYNLALLYSRSGDKDEAKEYYEKAL-----ALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
668-763 |
5.58e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 5.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 668 RLFLKDGQQEKAETILNEIENQPISPTIQHRVLLVRGDLSFARGYHVEAIQLYEaanEISSTY-GGEKTIEAYFNLGVAY 746
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFE---KLLKRYpDSPKAPDALLKLGLSY 77
|
90
....*....|....*..
gi 729648 747 VKCDQFEKAEEAFEQML 763
Cdd:COG1729 78 LELGDYDKARATLEELI 94
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
167-315 |
6.28e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 49.92 E-value: 6.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 167 LPSRwSGRFIGRSFDMEAIRQWMLSPSPVCL---ITGWAGMGKTTIALE------AAYSCvddtsVWpafnsiiWVSADW 237
Cdd:NF040586 1 VPPR-NPNFTGREELLERLRDQLRSGGAAVVpqaLHGLGGVGKTQLALEyahrfrADYDL-----VW-------WIPADQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 238 KGL---SFSDflntIAYQLGRKEQIDksiNVKRFV--VRNALANYTREKPILLIVDSIDTAErDIHEFitsLPQGVK--V 310
Cdd:NF040586 68 PELvraSLAE----LARRLGLPLGPD---DVDEAAraVLDALRRGEPYRRWLLVFDNADDPE-DLRDL---LPTGGPghV 136
|
....*
gi 729648 311 LLTAR 315
Cdd:NF040586 137 LITSR 141
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
178-427 |
1.25e-05 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 47.37 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 178 RSFDMEAIRQW-MLSPSP-VCLITGWAGMGKTTIALEAAYscvDDTSVWPAFNSIIWVSaDWKGLSFSDFLNTIAYQLGR 255
Cdd:pfam00931 1 REDMVEKVIGKlSEKDEPgIVGIHGMGGVGKTTLAAQIFN---DFDEVEGHFDSVAWVV-VSKTFTISTLQQTILQNLGL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 256 KEQIDKSINVKRFVVRnaLANYTREKPILLIVDSIDTaERDIHEFITSLP---QGVKVLLTAR-----ENVKQTYresfg 327
Cdd:pfam00931 77 SEDDWDNKEEGELARK--IRRALLTKRFLLVLDDVWD-EEDWDKIGIPLPdreNGCRVLLTTRseevaGRVGGPS----- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 328 emTAIQLSGLDQTDAHEFFQQEV-HHCLQTCnlprkrEKLEqllhlssDLKNEFISATAGNPKAMALSIAYMSDDDIPAQ 406
Cdd:pfam00931 149 --DPHEVELLEPDEAWELFENKVfPKTLGEC------ELLE-------DVAKEIVEKCRGLPLALKVLGGLLSCKKTVEE 213
|
250 260
....*....|....*....|....*..
gi 729648 407 --QLIHELGKAG----YSLLELFEFLF 427
Cdd:pfam00931 214 wkHVYDVLQSELksnsYSLNSVRSILQ 240
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
708-803 |
2.07e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 708 FARGYHVEAIQLYEAAneISSTYGGEKTIEAYFNLGVAYVKCDQFEKAEEAFEQMLYDKHNANQVELIYYHYGMAqlLYR 787
Cdd:COG1729 4 LKAGDYDEAIAAFKAF--LKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLS--YLE 79
|
90
....*....|....*.
gi 729648 788 KGEKTKAVESNQKAIR 803
Cdd:COG1729 80 LGDYDKARATLEELIK 95
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
700-814 |
2.50e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 700 LLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLGVAYVKCDQFEKAEEAFEQMLydKHNANQVeliYYHY 779
Cdd:COG4785 76 YYERGVAYDSLGDYDLAIADFDQALELDPDL-----AEAYNNRGLAYLLLGDYDAALEDFDRAL--ELDPDYA---YAYL 145
|
90 100 110
....*....|....*....|....*....|....*
gi 729648 780 GMAQLLYRKGEKTKAVESNQKAIRLiDSWEPAIGI 814
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALEL-DPNDPERAL 179
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
269-761 |
2.78e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.93 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 269 VVRNALANYTREKPILLIVDsidtaerDIH-------EFITSL-----PQGVKVLLTAREN----------VKQTYRESF 326
Cdd:COG3899 421 ALLRLLRALAAERPLVLVLD-------DLHwadpaslELLEFLlrrlrDLPLLLVGTYRPEevppahplrlLLAELRRAG 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 327 GEMTAIQLSGLDQTDAHEFfqqevhhclqtcnlprkrekLEQLLH---LSSDLKNEFISATAGNPKAMALSIAYMSDD-- 401
Cdd:COG3899 494 AGVTRLELGPLSREEVAAL--------------------VADLLGaaeLPAELAELLVERTGGNPFFLEELLRALLEEgl 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 402 ---DIPAQQLIHELGKAGY--SLLELFEflfgRTWDRCNEDTRKLWQTLCFFSKPPDEKSLAAAAGLDARRFHYAMEQMR 476
Cdd:COG3899 554 lrfDGGGWRWDAALAALALpdTVVDLLA----ARLDRLPPAARRVLRLAAVLGRRFDLELLAAVLGLSEAELAAALEELV 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 477 SYALIQPERSQGRTQY-----LAHQtvVAYgeQHLSEqheyekEARnrwahyyidyAETHLKreqpnsiywsylLGRNLd 551
Cdd:COG3899 630 AAGLLVPRGDAGGGRYrfrhdLVRE--AAY--ASLPP------EER----------RALHRR------------IARAL- 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 552 qmkqewpnilkviqwasETEQKEILIELITRISHFLSRINLPLR-IEYGRKAADAAHHLGQHtreayfridtsgwalmev 630
Cdd:COG3899 677 -----------------EARGPEPLEERLFELAHHLNRAGERDRaARLLLRAARRALARGAY------------------ 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 631 ndlDGALQQIEAGLKILEqSDAHDAYDLKVwgHALKARLFLKDGQQEKAETILNEIENQPI-----SPTIQHRVLLVRGD 705
Cdd:COG3899 722 ---AEALRYLERALELLP-PDPEEEYRLAL--LLELAEALYLAGRFEEAEALLERALAARAlaalaALRHGNPPASARAY 795
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 706 LSFA---RGYHVEAIQLYEAANEISSTYGGEK-TIEAYFNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:COG3899 796 ANLGlllLGDYEEAYEFGELALALAERLGDRRlEARALFNLGFILHWLGPLREALELLRE 855
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
666-819 |
3.57e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 3.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 666 KARLFLKDGQQEKAETILNEIENqpISPTiQHRVLLVRGDLSFARGYHVEAIQLYEAANEISStyggeKTIEAYFNLGVA 745
Cdd:TIGR02917 165 LAQLALAENRFDEARALIDEVLT--ADPG-NVDALLLKGDLLLSLGNIELALAAYRKAIALRP-----NNIAVLLALATI 236
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 729648 746 YVKCDQFEKAEEAFEQMLYDKHNANQVeliyyHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVE 819
Cdd:TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLA-----HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
708-804 |
6.74e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 708 FARGYHVEAIQLYEAANEISSTYGgektiEAYFNLGVAYVKCDQFEKAEeAFEQMLydKHNANQVEliyYHYGMAQLLYR 787
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNA-----DALNNLGLLLLEQGRYDEAI-ALEKAL--KLDPNNAE---ALLNLAELLLE 71
|
90
....*....|....*..
gi 729648 788 KGEKTKAVESNQKAIRL 804
Cdd:COG3063 72 LGDYDEALAYLERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
736-804 |
1.20e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 1.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 736 IEAYFNLGVAYVKCDQFEKAEEAFEQML-YDKHNANqveliyYHYGMAQLLYRKGEKTKAVESNQKAIRL 804
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALrLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
660-763 |
2.32e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 660 VWGHALKARLFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYggektIEA 738
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKaLRLDPDNA----DALLDLAEALLAAGDTEEAEELLERALALDPDN-----PEA 87
|
90 100
....*....|....*....|....*
gi 729648 739 YFNLGVAYVKCDQFEKAEEAFEQML 763
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
192-299 |
2.94e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 192 PSPVCLITGWAGMGKTTIALEAAYSCVddtsvwPAFNSIIWVSADWkglsFSDFLNTIAYQLGRKEQIDKSINVKRFVVR 271
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELG------PPGGGVIYIDGED----ILEEVLDQLLLIIVGGKKASGSGELRLRLA 70
|
90 100
....*....|....*....|....*...
gi 729648 272 NALANYtrEKPILLIVDSIDTAERDIHE 299
Cdd:smart00382 71 LALARK--LKPDVLILDEITSLLDAEQE 96
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
698-761 |
9.68e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 9.68e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 729648 698 RVLLVRGDLSFARGYHVEAIQLYEAANEISSTYGGEK---TIEAYFNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhplTATTLLNLGRLYLELGRYEEALELLER 70
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
605-710 |
1.33e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 605 AAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDlkvwGHALKARLFLKDGQQEKAETILN 684
Cdd:pfam17874 110 ARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVD----AYVLLARIALAQGELEEALTLLR 185
|
90 100 110
....*....|....*....|....*....|....*..
gi 729648 685 EIE---------NQPISPTIQHRV--LLVRGDLSFAR 710
Cdd:pfam17874 186 RAEllarqsffhVDWLANAERVRVrlWLARGDLRAAV 222
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
736-763 |
1.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.68e-03
10 20
....*....|....*....|....*...
gi 729648 736 IEAYFNLGVAYVKCDQFEKAEEAFEQML 763
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
174-312 |
1.70e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 40.18 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 174 RFIGRSFDMEAIR----QWMLSPSPVCLITGWAGMGKTTIALEAAYSCVDDTSVWPA--FNSIIWVSADWKGLSFSDFLN 247
Cdd:pfam13191 1 RLVGREEELEQLLdaldRVRSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRgkCDENLPYSPLLEALTREGLLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 248 TI-----AYQLGR-KEQIDKSIN---------VKRF--VVRNALANYTR-EKPILLIVDSI---DTAERDIHEFITSLPQ 306
Cdd:pfam13191 81 QLldeleSSLLEAwRAALLEALApvpelpgdlAERLldLLLRLLDLLARgERPLVLVLDDLqwaDEASLQLLAALLRLLE 160
|
....*.
gi 729648 307 GVKVLL 312
Cdd:pfam13191 161 SLPLLV 166
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
691-794 |
2.27e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.64 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 691 ISPTIQHRVLLvrGDLSFARGYHVEAIQLYEAAneISSTYGGE-----KTIEAYFN------------------------ 741
Cdd:COG4700 85 FADTVQNRVRL--ADALLELGRYDEAIELYEEA--LTGIFADDphillGLAQALFElgryaealetlekliaknpdfkss 160
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 729648 742 -----LGVAYVKCDQFEKAEEAFEQMlyDKHNANQVELIYYhygmAQLLYRKGEKTKA 794
Cdd:COG4700 161 dahllYARALEALGDLEAAEAELEAL--ARRYSGPEARYRY----AKFLARQGRTAEA 212
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
669-763 |
2.49e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 669 LFLKDGQQEKAETILNE-IENQPISPtiqhRVLLVRGDLSFARGYHVEAIQlYEAANEISSTYGgektiEAYFNLGVAYV 747
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKaLELDPDNA----DALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNA-----EALLNLAELLL 70
|
90
....*....|....*.
gi 729648 748 KCDQFEKAEEAFEQML 763
Cdd:COG3063 71 ELGDYDEALAYLERAL 86
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
630-812 |
2.96e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 630 VNDLDGALQQIEAGLKILEqsdahDAYDLKVwghaLKARLFLKDGQQEKAETILNEIENQPISptiQHRVLLVRGDLSFA 709
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKP-----DNTEAQI----GLAQLLLAAKRTESAKKIAKSLQKQHPK---AALGFELEGDLYLR 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 710 RGYHVEAIQLYEAANEISSTYG-----------------GEKTIEAY-----------FNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQnaiklhrallasgntaeAVKTLEAWlkthpndavlrTALAELYLAQKDYDKAIKHYQT 795
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 729648 762 MLyDKHNANQVELiyyhyGMAQLLYRKGEKTKAVESNQKAIRLIDSwEPAI 812
Cdd:TIGR02917 796 VV-KKAPDNAVVL-----NNLAWLYLELKDPRALEYAERALKLAPN-IPAI 839
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
704-748 |
4.32e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.53 E-value: 4.32e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 729648 704 GDLSFARGYHVEAIQLYEAANEISSTYggektIEAYFNLGVAYVK 748
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN-----PEAYYNLGLAYYK 40
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
718-804 |
5.68e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.13 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 718 QLYEAANEISSTYGGEKTIEAYFNLGVAYVKCDQFEKAEEAFEQMLydKHNANQVElIYYHYGMAqlLYRKGEKTKAVES 797
Cdd:COG4785 55 AAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQAL--ELDPDLAE-AYNNRGLA--YLLLGDYDAALED 129
|
....*..
gi 729648 798 NQKAIRL 804
Cdd:COG4785 130 FDRALEL 136
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
626-723 |
9.72e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.30 E-value: 9.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 729648 626 ALMEVNDLDGALQQIEAGLKileqsDAHDAydlkvwghALK-------ARLFLKDGQQEKAETILNEIENQPISPtiqhR 698
Cdd:COG2976 99 AAVDAGDLDKAAAQLQWVLD-----NAKDP--------ALKalarlrlARVLLAQKKYDEALATLDAVKPEAFAA----L 161
|
90 100
....*....|....*....|....*
gi 729648 699 VLLVRGDLSFARGYHVEAIQLYEAA 723
Cdd:COG2976 162 YAELRGDILLAQGDKAEARAAYQKA 186
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
736-761 |
9.80e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 9.80e-03
10 20
....*....|....*....|....*.
gi 729648 736 IEAYFNLGVAYVKCDQFEKAEEAFEQ 761
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEK 26
|
|
| |
