NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1352902|sp|P47138|]
View 

RecName: Full=Diphthamide biosynthesis protein 4; AltName: Full=J protein type 3

Protein Classification

diphthamide biosynthesis protein 4( domain architecture ID 10446362)

diphthamide biosynthesis protein 4 (DPH4) is a J domain-containing CSL-type zinc finger protein that is required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 8-73 6.16e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 78.28  E-value: 6.16e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902      8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPD---KNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
zf-CSL pfam05207
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 93-164 8.71e-13

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


:

Pssm-ID: 398744  Cd Length: 55  Bit Score: 59.95  E-value: 8.71e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1352902     93 DEFSLDDFSFDEDKLEFMMNCpRCQFVggFHFSESLLDECidnvdamershsgyQLLTQCSACSLWLKVNFD 164
Cdd:pfam05207   1 DEVELEDFEFDEEEESYYYPC-RCGDE--FEITEEDLEEG--------------EVVVQCPSCSLWIKVIYD 55
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 8-73 6.16e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 78.28  E-value: 6.16e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902      8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPD---KNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 8-83 1.69e-18

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 77.05  E-value: 1.69e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902    8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSksiHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQ 83
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNP---GDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLL 73
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 8-65 4.96e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 4.96e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 1352902    8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSksiHDTVSNVTINKIQDAYKILSN 65
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP---DDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
8-67 5.78e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 65.72  E-value: 5.78e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902       8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSihDTVSNVTINKIQDAYKILSNIK 67
Cdd:smart00271   2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPE 59
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 10-105 5.23e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 65.31  E-value: 5.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     10 YEILRIPSDATQDEIKKAYRNRLLNTHPDklsksihdtvsnvtINK----------IQDAYKILSNIKTRREYDRLILEN 79
Cdd:TIGR02349   3 YEILGVSKDASEEEIKKAYRKLAKKYHPD--------------RNKdkeaeekfkeINEAYEVLSDPEKRAQYDQFGHAG 68

                          90       100
                  ....*....|....*....|....*.
gi 1352902     80 YKRQGFHNcGDGLDEFSLDDFSFDED 105
Cdd:TIGR02349  69 FNGGGGGG-GGGFNGFDIGFFGDFGD 93
zf-CSL pfam05207
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 93-164 8.71e-13

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


Pssm-ID: 398744  Cd Length: 55  Bit Score: 59.95  E-value: 8.71e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1352902     93 DEFSLDDFSFDEDKLEFMMNCpRCQFVggFHFSESLLDECidnvdamershsgyQLLTQCSACSLWLKVNFD 164
Cdd:pfam05207   1 DEVELEDFEFDEEEESYYYPC-RCGDE--FEITEEDLEEG--------------EVVVQCPSCSLWIKVIYD 55
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 9-103 9.61e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 62.13  E-value: 9.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQGFHNC 88
Cdd:PRK14277   7 YYEILGVDRNATEEEIKKAYRRLAKKYHPD---LNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83

                         90
                 ....*....|....*
gi 1352902    89 GDGLDEFSLDDFSFD 103
Cdd:PRK14277  84 GFGQGGFGGGGFDFD 98
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
9-103 1.08e-08

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 53.29  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKlsKSIHDTVSNvtINKIQDAYKILSNIKTRREYDRLilenykrqGFhnc 88
Cdd:NF037946   7 YYEVLGVDRDADDQEIKKAFRKLAKKYHPDR--NKAPDAAEI--FAEINEAYEVLSNPEKRANYDKY--------GH--- 71

                         90
                 ....*....|....*
gi 1352902    89 gDGLDefSLDDFSFD 103
Cdd:NF037946  72 -DGVD--GEGGFGFD 83
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 8-73 6.16e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 78.28  E-value: 6.16e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902      8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYD 73
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPD---KNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 8-83 1.69e-18

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 77.05  E-value: 1.69e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902    8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSksiHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQ 83
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNP---GDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLL 73
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
8-83 1.50e-17

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 73.21  E-value: 1.50e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902    8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSihDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQ 83
Cdd:COG2214   6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGEL--KALAEELFQRLNEAYEVLSDPERRAEYDRELGQSGKGS 79
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 8-65 4.96e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 65.64  E-value: 4.96e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 1352902    8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSksiHDTVSNVTINKIQDAYKILSN 65
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP---DDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
8-67 5.78e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 65.72  E-value: 5.78e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902       8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSihDTVSNVTINKIQDAYKILSNIK 67
Cdd:smart00271   2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD--KEEAEEKFKEINEAYEVLSDPE 59
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 10-105 5.23e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 65.31  E-value: 5.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     10 YEILRIPSDATQDEIKKAYRNRLLNTHPDklsksihdtvsnvtINK----------IQDAYKILSNIKTRREYDRLILEN 79
Cdd:TIGR02349   3 YEILGVSKDASEEEIKKAYRKLAKKYHPD--------------RNKdkeaeekfkeINEAYEVLSDPEKRAQYDQFGHAG 68

                          90       100
                  ....*....|....*....|....*.
gi 1352902     80 YKRQGFHNcGDGLDEFSLDDFSFDED 105
Cdd:TIGR02349  69 FNGGGGGG-GGGFNGFDIGFFGDFGD 93
zf-CSL pfam05207
CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which ...
 93-164 8.71e-13

CSL zinc finger; This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine.


Pssm-ID: 398744  Cd Length: 55  Bit Score: 59.95  E-value: 8.71e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1352902     93 DEFSLDDFSFDEDKLEFMMNCpRCQFVggFHFSESLLDECidnvdamershsgyQLLTQCSACSLWLKVNFD 164
Cdd:pfam05207   1 DEVELEDFEFDEEEESYYYPC-RCGDE--FEITEEDLEEG--------------EVVVQCPSCSLWIKVIYD 55
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 9-103 9.61e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 62.13  E-value: 9.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQGFHNC 88
Cdd:PRK14277   7 YYEILGVDRNATEEEIKKAYRRLAKKYHPD---LNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83

                         90
                 ....*....|....*
gi 1352902    89 GDGLDEFSLDDFSFD 103
Cdd:PRK14277  84 GFGQGGFGGGGFDFD 98
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 9-102 1.41e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 61.32  E-value: 1.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDkLSKsihDTVSNVTINKIQDAYKILSNIKTRREYDRL------------- 75
Cdd:PRK14291   5 YYEILGVSRNATQEEIKKAYRRLARKYHPD-FNK---NPEAEEKFKEINEAYQVLSDPEKRKLYDQFghaafsgsgqqqq 80

                         90       100
                 ....*....|....*....|....*..
gi 1352902    76 ILENYKRQGFHNCGDGLDEFsLDDFSF 102
Cdd:PRK14291  81 GQEGFSDFGGGNIEDILEDV-FDIFGF 106
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 9-74 2.61e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 60.63  E-value: 2.61e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKlSKsihDTVSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14298   7 YYEILGLSKDASVEDIKKAYRKLAMKYHPDK-NK---EPDAEEKFKEISEAYAVLSDAEKRAQYDR 68
PRK14295 PRK14295
molecular chaperone DnaJ;
9-73 9.73e-11

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 59.09  E-value: 9.73e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYD 73
Cdd:PRK14295  11 YYKVLGVPKDATEAEIKKAYRKLAREYHPD---ANKGDAKAEERFKEISEAYDVLSDEKKRKEYD 72
PRK14280 PRK14280
molecular chaperone DnaJ;
9-104 1.15e-10

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 58.96  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRnrllnthpdKLSKSIHDtvsnvTINK----------IQDAYKILSNIKTRREYDRLILE 78
Cdd:PRK14280   6 YYEVLGVSKSASKDEIKKAYR---------KLSKKYHP-----DINKeegadekfkeISEAYEVLSDDQKRAQYDQFGHA 71

                         90       100
                 ....*....|....*....|....*.
gi 1352902    79 NyKRQGFHNCGDGLDEFSlDDFSFDE 104
Cdd:PRK14280  72 G-PNQGFGGGGFGGGDFG-GGFGFED 95
PRK14279 PRK14279
molecular chaperone DnaJ;
10-105 2.11e-10

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 58.21  E-value: 2.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902    10 YEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYD---RLILENYKRQGFH 86
Cdd:PRK14279  12 YKELGVSSDASAEEIKKAYRKLARELHPD---ANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDetrRLFAGGGFGGRRF 88

                         90
                 ....*....|....*....
gi 1352902    87 NCGDGLDEFSLDDFSFDED 105
Cdd:PRK14279  89 DGGGGFGGFGTGGDGAEFN 107
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 9-74 2.19e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 57.90  E-value: 2.19e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14281   5 YYEVLGVSRSADKDEIKKAYRKLALKYHPD---KNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 9-74 2.69e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 57.88  E-value: 2.69e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSIHDtvSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14282   6 YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKE--AEQKFKEIQEAYEVLSDPQKRAMYDR 69
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 9-128 6.33e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 56.77  E-value: 6.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKsihDTVSNVTINKIQDAYKILSNIKTRREYDRlilenYKRQGFHNC 88
Cdd:PRK14284   3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG---DAEAEKRFKEVSEAYEVLSDAQKRESYDR-----YGKDGPFAG 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 1352902    89 GDGldeFSLDDFSFDEDKLEFMMNCPRCQFVGGFHFSESL 128
Cdd:PRK14284  75 AGG---FGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGL 111
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 4-102 7.00e-10

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 56.75  E-value: 7.00e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     4 VNSLTHYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSihdtvsnVTINKIQDAYKILSNIKTRREYDRlilenYKRQ 83
Cdd:PTZ00037  25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP-------EKFKEISRAYEVLSDPEKRKIYDE-----YGEE 92

                         90
                 ....*....|....*....
gi 1352902    84 GFHNCGDGLDEFSLDDFSF 102
Cdd:PTZ00037  93 GLEGGEQPADASDLFDLIF 111
PRK14289 PRK14289
molecular chaperone DnaJ;
9-75 8.54e-10

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 56.38  E-value: 8.54e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRL 75
Cdd:PRK14289   7 YYEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQF 70
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 9-96 3.52e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 54.39  E-value: 3.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQGFHNC 88
Cdd:PRK14294   6 YYEILGVTRDASEEEIKKSYRKLAMKYHPD---RNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82


                 ....*...
gi 1352902    89 GDGLDEFS 96
Cdd:PRK14294  83 SGFDDIFS 90
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 10-71 5.98e-09

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 50.00  E-value: 5.98e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1352902   10 YEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRRE 71
Cdd:COG5407   3 YEVLGVAKTASADEIKKAYRKLAKKYHPD---RNKGDPKAEERFKEINEAYELLSDAEKRAR 61
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
9-103 1.08e-08

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 53.29  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKlsKSIHDTVSNvtINKIQDAYKILSNIKTRREYDRLilenykrqGFhnc 88
Cdd:NF037946   7 YYEVLGVDRDADDQEIKKAFRKLAKKYHPDR--NKAPDAAEI--FAEINEAYEVLSNPEKRANYDKY--------GH--- 71

                         90
                 ....*....|....*
gi 1352902    89 gDGLDefSLDDFSFD 103
Cdd:NF037946  72 -DGVD--GEGGFGFD 83
PRK14288 PRK14288
molecular chaperone DnaJ;
7-109 1.11e-08

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 53.15  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     7 LTHYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRlilenYKRQGFH 86
Cdd:PRK14288   3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPD---RNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR-----YGKKGLN 74

                         90       100
                 ....*....|....*....|....*...
gi 1352902    87 NCGDGLDEFSldDF-----SFDEDKLEF 109
Cdd:PRK14288  75 QAGASQSDFS--DFfedlgSFFEDAFGF 100
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 9-74 1.12e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 53.02  E-value: 1.12e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDkLSKsihDTVSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14299   6 YYAILGVPKNASQDEIKKAFKKLARKYHPD-VNK---SPGAEEKFKEINEAYTVLSDPEKRRIYDT 67
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 9-96 3.24e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 51.67  E-value: 3.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQG-FHN 87
Cdd:PRK14301   6 YYEVLGVSRDASEDEIKKAYRKLALQYHPD---RNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGgFGG 82


                 ....*....
gi 1352902    88 CGDGLDEFS 96
Cdd:PRK14301  83 FSSAEDIFS 91
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
1-65 5.48e-08

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 47.48  E-value: 5.48e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1352902    1 MSLVNsltHYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSIHD---TVSNVTINKIQDAYKILSN 65
Cdd:COG1076   1 MQLDD---AFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGLPEeeqRLALQKAAAINEAYETLKD 65
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 10-91 7.10e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 50.53  E-value: 7.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902    10 YEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKsihDTVSNVTINKIQDAYKILSNIKTRREYDRlilenYKRQGFHNCG 89
Cdd:PRK10767   7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG---DKEAEEKFKEIKEAYEVLSDPQKRAAYDQ-----YGHAAFEQGG 78


                 ..
gi 1352902    90 DG 91
Cdd:PRK10767  79 GG 80
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 10-73 9.01e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 50.47  E-value: 9.01e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1352902    10 YEILRIPSDATQDEIKKAYRnrllnthpdKLSKSIHDtvsnvTINK----------IQDAYKILSNIKTRREYD 73
Cdd:PRK14276   7 YDRLGVSKDASQDEIKKAYR---------KLSKKYHP-----DINKepgaeekykeVQEAYETLSDPQKRAAYD 66
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 8-101 1.10e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 50.37  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     8 THYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDRlilenYKRQGFHN 87
Cdd:PRK14286   5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPD---KNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ-----FGKAGVNA 76

                         90
                 ....*....|....
gi 1352902    88 CGDGLDEFSLDDFS 101
Cdd:PRK14286  77 GAGGFGQGAYTDFS 90
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 9-100 1.41e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 49.82  E-value: 1.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklskSIHDTVSNVTINKIQDAYKILSNIKTRREYDRlilenykrqgFHNC 88
Cdd:PRK14283   7 YYEVLGVDRNADKKEIKKAYRKLARKYHPD----VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ----------FGHA 72

                         90
                 ....*....|..
gi 1352902    89 gdGLDEFSLDDF 100
Cdd:PRK14283  73 --GMDGFSQEDI 82
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 9-103 1.54e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 49.60  E-value: 1.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKlSKSIHDTVSnvTINKIQDAYKILSNIKTRREYDRLILENYK-RQGFHN 87
Cdd:PRK14285   5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDK-NKGNKEAES--IFKEATEAYEVLIDDNKRAQYDRFGHTAFEgGGGFEG 81

                         90       100
                 ....*....|....*....|
gi 1352902    88 CGDGLDEFS--LDDFS--FD 103
Cdd:PRK14285  82 FSGGFSGFSdiFEDFGdiFD 101
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 9-74 2.17e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 49.50  E-value: 2.17e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSksihDTVSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14292   4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNK----EKGAAEKFAQINEAYAVLSDAEKRAHYDR 65
PRK14293 PRK14293
molecular chaperone DnaJ;
10-74 3.12e-07

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 48.83  E-value: 3.12e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1352902    10 YEILRIPSDATQDEIKKAYRNRLLNTHPDklsksihdtvsnvtINK----------IQDAYKILSNIKTRREYDR 74
Cdd:PRK14293   6 YEILGVSRDADKDELKRAYRRLARKYHPD--------------VNKepgaedrfkeINRAYEVLSDPETRARYDQ 66
PRK14297 PRK14297
molecular chaperone DnaJ;
9-74 7.29e-07

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 47.86  E-value: 7.29e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDklsKSIHDTVSNVTINKIQDAYKILSNIKTRREYDR 74
Cdd:PRK14297   6 YYEVLGLEKGASDDEIKKAFRKLAIKYHPD---KNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQ 68
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 9-105 7.33e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 47.62  E-value: 7.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDKLSKSIHDtvSNVTINKIQDAYKILSNIKTRREYDrlilenykRQGFHNC 88
Cdd:PRK14290   5 YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAE--AEEKFKEISEAYEVLSDPQKRRQYD--------QTGTVDF 74

                         90
                 ....*....|....*..
gi 1352902    89 GDGLDEFSLDDFSFDED 105
Cdd:PRK14290  75 GAGGSNFNWDNFTHFSD 91
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 9-73 6.76e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 45.04  E-value: 6.76e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRnrllnthpdKLSKSIH-----DTVSNVTINKIQDAYKILSNIKTRREYD 73
Cdd:PRK14278   5 YYGLLGVSRNASDAEIKRAYR---------KLARELHpdvnpDEEAQEKFKEISVAYEVLSDPEKRRIVD 65
djlA PRK09430
co-chaperone DjlA;
10-40 1.52e-05

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 43.65  E-value: 1.52e-05
                         10        20        30
                 ....*....|....*....|....*....|..
gi 1352902    10 YEILRIPSDATQDEIKKAYRnRLLNT-HPDKL 40
Cdd:PRK09430 203 YKVLGVSESDDDQEIKRAYR-KLMSEhHPDKL 233
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 9-96 4.51e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 42.69  E-value: 4.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDkLSKSIHdtvSNVTINKIQDAYKILSNIKTRREYDRLILENyKRQGFHNC 88
Cdd:PRK14287   6 YYEVLGVDRNASVDEVKKAYRKLARKYHPD-VNKAPD---AEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD-PNQGFGGG 80


                 ....*....
gi 1352902    89 GDG-LDEFS 96
Cdd:PRK14287  81 GAGdFGGFS 89
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 6-98 6.38e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 42.31  E-value: 6.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     6 SLTHYEILRIPSDATQDEIKKAYRNRLLNTHPDklSKSIHDtvSNVTINKIQDAYKILSNIKTRREYDRLILENYKRQGF 85
Cdd:PRK14300   2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPD--TTDAKD--AEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQS 77

                         90
                 ....*....|...
gi 1352902    86 HNCGDGLDEFSLD 98
Cdd:PRK14300  78 RGGGGNHGGFHPD 90
PRK10266 PRK10266
curved DNA-binding protein;
9-100 1.69e-04

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 40.96  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDkLSKsihDTVSNVTINKIQDAYKILSNIKTRREYDRLILE----NYKRQG 84
Cdd:PRK10266   6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPD-VSK---EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHrndpQFNRQF 81

                         90
                 ....*....|....*.
gi 1352902    85 FHNCGDGLDEFSLDDF 100
Cdd:PRK10266  82 QHGDGQSFNAEDFDDI 97
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 9-96 3.50e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 36.85  E-value: 3.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1352902     9 HYEILRIPSDATQDEIKKAYRNRLLNTHPDkLSKSIHDTVSNVTINkiqDAYKILSNIKTRREYDrlilenykrQGFHNC 88
Cdd:PRK14296   6 YYEVLGVSKTASEQEIRQAYRKLAKQYHPD-LNKSPDAHDKMVEIN---EAADVLLDKDKRKQYD---------QFGHAA 72


                 ....*...
gi 1352902    89 GDGLDEFS 96
Cdd:PRK14296  73 FDGSSGFS 80
PTZ00100 PTZ00100
DnaJ chaperone protein; Provisional
 10-38 6.92e-03

DnaJ chaperone protein; Provisional


Pssm-ID: 240265  Cd Length: 116  Bit Score: 34.83  E-value: 6.92e-03
                         10        20
                 ....*....|....*....|....*....
gi 1352902    10 YEILRIPSDATQDEIKKAYRNRLLNTHPD 38
Cdd:PTZ00100  68 YKILNISPTASKERIREAHKQLMLRNHPD 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH