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Conserved domains on  [gi|1709608|sp|P80484|]
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RecName: Full=Peridinin-chlorophyll a-binding protein 1, chloroplastic; Short=PCP; Flags: Precursor

Protein Classification

PCP domain-containing protein( domain architecture ID 10493455)

PCP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 221-365 2.47e-58

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


:

Pssm-ID: 426770  Cd Length: 145  Bit Score: 186.17  E-value: 2.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608    221 DKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTS 300
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKPLPGKNPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSIDAKGVTS 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1709608    301 AADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVV 365
Cdd:pfam02429  81 LADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 58-203 1.90e-51

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


:

Pssm-ID: 426770  Cd Length: 145  Bit Score: 168.45  E-value: 1.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608     58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQ-APGKlQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSgPNGV 136
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKpLPGK-NPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSID-AKGV 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1709608    137 TSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVV 203
Cdd:pfam02429  79 TSLADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
 
Name Accession Description Interval E-value
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 221-365 2.47e-58

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


Pssm-ID: 426770  Cd Length: 145  Bit Score: 186.17  E-value: 2.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608    221 DKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTS 300
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKPLPGKNPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSIDAKGVTS 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1709608    301 AADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVV 365
Cdd:pfam02429  81 LADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 58-203 1.90e-51

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


Pssm-ID: 426770  Cd Length: 145  Bit Score: 168.45  E-value: 1.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608     58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQ-APGKlQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSgPNGV 136
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKpLPGK-NPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSID-AKGV 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1709608    137 TSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVV 203
Cdd:pfam02429  79 TSLADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
 
Name Accession Description Interval E-value
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 221-365 2.47e-58

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


Pssm-ID: 426770  Cd Length: 145  Bit Score: 186.17  E-value: 2.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608    221 DKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTS 300
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKPLPGKNPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSIDAKGVTS 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1709608    301 AADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVV 365
Cdd:pfam02429  81 LADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
PCP pfam02429
Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble ...
 58-203 1.90e-51

Peridinin-chlorophyll A binding protein; Peridinin-chlorophyll-protein, a water-soluble light-harvesting complex that has a blue-green absorbing carotenoid as its main pigment, is present in most photosynthetic dinoflagellates. These proteins are composed of two similar repeated domains. These domains constitute a scaffold with pseudo-twofold symmetry surrounding a hydrophobic cavity filled by two lipid, eight peridinin, and two chlorophyll a molecules.


Pssm-ID: 426770  Cd Length: 145  Bit Score: 168.45  E-value: 1.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709608     58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQ-APGKlQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSgPNGV 136
Cdd:pfam02429   1 DKIGDAAKKLSEASYPFLKEIDWLSDVYLKpLPGK-NPLKALKAIDKMIEMGAAMDPNALKAAAEAHHKAIGSID-AKGV 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1709608    137 TSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVV 203
Cdd:pfam02429  79 TSLADYAAVNAALGRMIASVPKSKVMDVYNAFAGFVDPDVPNNMFSKVNALDAEAAYKAFYTFKDVV 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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