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Conserved domains on  [gi|2829740|sp|P89452|]
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RecName: Full=Major DNA-binding protein

Protein Classification

PHA03362 family protein( domain architecture ID 10010540)

PHA03362 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03362 PHA03362
single-stranded binding protein UL29; Provisional
 16-1196 0e+00

single-stranded binding protein UL29; Provisional


:

Pssm-ID: 223056  Cd Length: 1189  Bit Score: 1852.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     16 GPMGYVYGRACPAEGLELLSLLSARSGDADVAVAPLIVGLTVESGFEANVAAVVGSRTTGLGGTAVSLKLMPSHYSPSVY 95
Cdd:PHA03362   13 GPLGYVYARPRDDEDLEELSLLSARSRDSDVAVAPLIRGLTVERDFVVNVAVVAGSKTTGLGGGGITLKLTPSHFHPNVF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     96 VFHGGRHLAPSTQAPNLTRLCERARPHFGFADYAPRPCDLKHETTGDALCERLGLDPDRALLYLVITEGFREAVCISNTF 175
Cdd:PHA03362   93 VFHGGECISPSSEAPNLTRLCEEARRRFGFSSYAPPPVDNAVETTGEAICARLGLDPERTLLYLVVTEGFKEAVYACNTF 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    176 LHLGGMDKVTIGDAEVHRIPVYPLQMFMPDFSRVIADPFNCNHRSIGENFNYPLPFFNRPLARLLFEAVVGPAAVALRAR 255
Cdd:PHA03362  173 LHYGGADTVTIGSAEVRRIPLYPVQLFMPDVNRLAADPFNAKSRSIGEGFVYPKPFYNDALCRLLHGYVLGPAAVALRVR 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    256 NVDAVARAAAHLAFDENHEGAALPADITFTAFEASQGKPQRGARDAGNKGPAGGFEQRLASVMAGDAALALESIVSMAVF 335
Cdd:PHA03362  253 NLDAVARGAAHLAFDENHEGAVLPADKTFTGFDSTQGKSGRGDGSGGKLSAGGGDERRLASVMAADLALSIESVVSDSVY 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    336 DEPPPDITTWPLLEGQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAGPADPKDH-SKPSFYRFFLVPGTH 414
Cdd:PHA03362  333 DEPPPDVSEWPMLCGAEGHAERLEALGAYMARLAGLVGAMVFSSNSVLYMTEVDDGGAADGKDGgSNPSFYRFYLIAAPH 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    415 VAANPQLDREGHVVPGYEGRPTAPLVGGTQEFAGEHLAMLCGFSPALLAKMLFYLERCDGGVIVGRQEMDVFRYVADSGQ 494
Cdd:PHA03362  413 LAGNPQVDRDGRVLPGTRDVPAAGTSGSDQEFSPDHLALACGFSPQLLARLLFYLERCDAGAFGGRGDLDALKYVASSLD 492

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    495 TDVPCNLCTFETRHACAHTTLMRLRARHPKFASAARGAIGVFGTMNSAYSDCDVLGNYAAFSALKRADGSENTRTIMQET 574
Cdd:PHA03362  493 ADVPCELCDGRTRHACAHTTLHRLRTRLPRFGAPLRGPIGVFGTMNSAYSDCDVLGNYAPYSALKRGGGGEAARAVMQDT 572

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    575 YRAATERVMAELEALQYVDQAVPTaLGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEGRNFKFRDGLAEANHAM 654
Cdd:PHA03362  573 YRATLERVMDYLEKEGLIDPDTPT-SGEDTSIIRDRASFMTALSNLNRTVDEEAEQFMRNLVEARDYKIREGLAEANHTF 651

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    655 SLSLDPYTCGPCPLLQLLARRSNLAVYQDLALSQCHGVFAGQSVEGRNFRNQFQPVLRRRVMDLFNNGFLSAKTLTVALS 734
Cdd:PHA03362  652 SLSLDPYSSGFCPVLSFLYRRTVLAVVQDLALSQCHGVFAGQQVEGRNFRNQFQPVLRRRFMDLLNKGFLTTKTVTVTLS 731

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    735 EGaAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFAGASANASEAAKARVASLQSAYQKPDKRVDILLGP 814
Cdd:PHA03362  732 ES-AVMAPDLTASQTEPAIKSMEGDLARVSVEVLRELRVKNRVVFSGGGANASEAARARVAGMASAYQRPDKRVNILNGP 810

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    815 LGFLLKQFHAVIFPNGKPPGSNQPNPQWFWTALQRNQLPARLLSREDIETIAFIKRFSLDYGAINFINLAPNNVSELAMY 894
Cdd:PHA03362  811 LGFLLKQFHDALFPNGKPPGSDTPNPQWFWTLLQRNQLPASLLSKEDIETIAFVKRFTDEYAAINFINLTPNNIGELAQF 890

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    895 YMANQILRYCDHSTYFINTLTAVIAGSRRPPSVQAAAawapqGGAGLEAGARALMDSLDAHPGAWTSMFASCNLLRPVMA 974
Cdd:PHA03362  891 YFANLILKYCDHSQYFINTLTAILVGSRRPRDPAALA-----GGPDVESAAEYVLEKLAGRPAAWTATFSSTNLVRSVMA 965

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    975 ARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLGGKNACPLLIFDRTRKFVLACPRAGFVCAASSLGGGAHEHSLCEQLR 1054
Cdd:PHA03362  966 TRPLVVLGLSISKYHGMAGNNRVFQAGNWGGLNGGKNVCPLLSFDRTRRFVLACPRVGFVCESGGFGSGFREDTLREQVR 1045

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740   1055 GIIAEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMEFTTRALERGHGEWSTDAALEVAHEAEALVSQ 1134
Cdd:PHA03362 1046 AILDSGGAAVQTAVYAAALKMLGERGQHMELDDWLALVDDEYLAASLVELNARVIERGGGDWSVEAALEVLKELEAGATA 1125

                        1130      1140      1150      1160      1170      1180
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2829740   1135 ---LGAAGEVFNFGDFGDEDDHaasFGGLAAAAGAAGVARKRAFHGDDPFGEGPPEKKD--LTLDML 1196
Cdd:PHA03362 1126 gggPAGGGEAFDFGACDDDDED---AADAGAISAPAAGGVKRPGDDDDLFDLPAPPEKRpgLTLDML 1189
 
Name Accession Description Interval E-value
PHA03362 PHA03362
single-stranded binding protein UL29; Provisional
 16-1196 0e+00

single-stranded binding protein UL29; Provisional


Pssm-ID: 223056  Cd Length: 1189  Bit Score: 1852.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     16 GPMGYVYGRACPAEGLELLSLLSARSGDADVAVAPLIVGLTVESGFEANVAAVVGSRTTGLGGTAVSLKLMPSHYSPSVY 95
Cdd:PHA03362   13 GPLGYVYARPRDDEDLEELSLLSARSRDSDVAVAPLIRGLTVERDFVVNVAVVAGSKTTGLGGGGITLKLTPSHFHPNVF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     96 VFHGGRHLAPSTQAPNLTRLCERARPHFGFADYAPRPCDLKHETTGDALCERLGLDPDRALLYLVITEGFREAVCISNTF 175
Cdd:PHA03362   93 VFHGGECISPSSEAPNLTRLCEEARRRFGFSSYAPPPVDNAVETTGEAICARLGLDPERTLLYLVVTEGFKEAVYACNTF 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    176 LHLGGMDKVTIGDAEVHRIPVYPLQMFMPDFSRVIADPFNCNHRSIGENFNYPLPFFNRPLARLLFEAVVGPAAVALRAR 255
Cdd:PHA03362  173 LHYGGADTVTIGSAEVRRIPLYPVQLFMPDVNRLAADPFNAKSRSIGEGFVYPKPFYNDALCRLLHGYVLGPAAVALRVR 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    256 NVDAVARAAAHLAFDENHEGAALPADITFTAFEASQGKPQRGARDAGNKGPAGGFEQRLASVMAGDAALALESIVSMAVF 335
Cdd:PHA03362  253 NLDAVARGAAHLAFDENHEGAVLPADKTFTGFDSTQGKSGRGDGSGGKLSAGGGDERRLASVMAADLALSIESVVSDSVY 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    336 DEPPPDITTWPLLEGQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAGPADPKDH-SKPSFYRFFLVPGTH 414
Cdd:PHA03362  333 DEPPPDVSEWPMLCGAEGHAERLEALGAYMARLAGLVGAMVFSSNSVLYMTEVDDGGAADGKDGgSNPSFYRFYLIAAPH 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    415 VAANPQLDREGHVVPGYEGRPTAPLVGGTQEFAGEHLAMLCGFSPALLAKMLFYLERCDGGVIVGRQEMDVFRYVADSGQ 494
Cdd:PHA03362  413 LAGNPQVDRDGRVLPGTRDVPAAGTSGSDQEFSPDHLALACGFSPQLLARLLFYLERCDAGAFGGRGDLDALKYVASSLD 492

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    495 TDVPCNLCTFETRHACAHTTLMRLRARHPKFASAARGAIGVFGTMNSAYSDCDVLGNYAAFSALKRADGSENTRTIMQET 574
Cdd:PHA03362  493 ADVPCELCDGRTRHACAHTTLHRLRTRLPRFGAPLRGPIGVFGTMNSAYSDCDVLGNYAPYSALKRGGGGEAARAVMQDT 572

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    575 YRAATERVMAELEALQYVDQAVPTaLGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEGRNFKFRDGLAEANHAM 654
Cdd:PHA03362  573 YRATLERVMDYLEKEGLIDPDTPT-SGEDTSIIRDRASFMTALSNLNRTVDEEAEQFMRNLVEARDYKIREGLAEANHTF 651

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    655 SLSLDPYTCGPCPLLQLLARRSNLAVYQDLALSQCHGVFAGQSVEGRNFRNQFQPVLRRRVMDLFNNGFLSAKTLTVALS 734
Cdd:PHA03362  652 SLSLDPYSSGFCPVLSFLYRRTVLAVVQDLALSQCHGVFAGQQVEGRNFRNQFQPVLRRRFMDLLNKGFLTTKTVTVTLS 731

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    735 EGaAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFAGASANASEAAKARVASLQSAYQKPDKRVDILLGP 814
Cdd:PHA03362  732 ES-AVMAPDLTASQTEPAIKSMEGDLARVSVEVLRELRVKNRVVFSGGGANASEAARARVAGMASAYQRPDKRVNILNGP 810

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    815 LGFLLKQFHAVIFPNGKPPGSNQPNPQWFWTALQRNQLPARLLSREDIETIAFIKRFSLDYGAINFINLAPNNVSELAMY 894
Cdd:PHA03362  811 LGFLLKQFHDALFPNGKPPGSDTPNPQWFWTLLQRNQLPASLLSKEDIETIAFVKRFTDEYAAINFINLTPNNIGELAQF 890

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    895 YMANQILRYCDHSTYFINTLTAVIAGSRRPPSVQAAAawapqGGAGLEAGARALMDSLDAHPGAWTSMFASCNLLRPVMA 974
Cdd:PHA03362  891 YFANLILKYCDHSQYFINTLTAILVGSRRPRDPAALA-----GGPDVESAAEYVLEKLAGRPAAWTATFSSTNLVRSVMA 965

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    975 ARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLGGKNACPLLIFDRTRKFVLACPRAGFVCAASSLGGGAHEHSLCEQLR 1054
Cdd:PHA03362  966 TRPLVVLGLSISKYHGMAGNNRVFQAGNWGGLNGGKNVCPLLSFDRTRRFVLACPRVGFVCESGGFGSGFREDTLREQVR 1045

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740   1055 GIIAEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMEFTTRALERGHGEWSTDAALEVAHEAEALVSQ 1134
Cdd:PHA03362 1046 AILDSGGAAVQTAVYAAALKMLGERGQHMELDDWLALVDDEYLAASLVELNARVIERGGGDWSVEAALEVLKELEAGATA 1125

                        1130      1140      1150      1160      1170      1180
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2829740   1135 ---LGAAGEVFNFGDFGDEDDHaasFGGLAAAAGAAGVARKRAFHGDDPFGEGPPEKKD--LTLDML 1196
Cdd:PHA03362 1126 gggPAGGGEAFDFGACDDDDED---AADAGAISAPAAGGVKRPGDDDDLFDLPAPPEKRpgLTLDML 1189
Viral_DNA_bp pfam00747
ssDNA binding protein; This protein is found in herpesviruses and is needed for replication.
 16-1136 0e+00

ssDNA binding protein; This protein is found in herpesviruses and is needed for replication.


Pssm-ID: 395604  Cd Length: 1120  Bit Score: 1315.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740      16 GPMGYVYGRACPAEGLELLSLLS--ARSGDADVAVAPLIVGLTVESGFEANVAAVVGSRTTGlggtavSLKLMPSHYSPS 93
Cdd:pfam00747   14 GPAGYIYFYPKSNETIDLEEASLlcARSSDSSVAIAPLLSGLTVESDFSTNVKAVHGTRDGG------TLLLKVTSFHPS 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740      94 VYVFHGGRHLAPSTQAPNLTRLCERARPHFGFADYAPRPCDLKHETTGDALCERLGLDPDRALLYLVITEGFREAVCISN 173
Cdd:pfam00747   88 VYVFHGTEHILPIFEAPGLTRLCEDAREKFGFSAFPPVPVANRRETDGEALCAALGLDPDSTLLYVVVTEGFKEALYAGN 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     174 TFLHLGGMDKVTIGDAEVHRIPVYPLQMFMpdfSRVIADPFNCNHRSIGENFNYPLPFFNRPLARLLFEAVVGPAAVALR 253
Cdd:pfam00747  168 LFPHPGGADKVQIGGGEVVRIPLYPVQLFM---SRLCDNPFDTNSRSIGEGFVYPRPFYNPALSRLLHYAVFTSWAQALR 244

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     254 ARNVDAVARAAAHLAFDENHEGAALPADITFTAFeasqgkpqrgarDAGNKGPAGGFEQRLASVMAGDAALALESIVSMA 333
Cdd:pfam00747  245 VRNVEAVIRAALKQAFQDNHEGAKLAPDKTFTGF------------SSQKISAQEGDELMLADSVAAELALSYASIFLDA 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     334 VFDEPPP-DITTWPLLEGQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAG-PADPKD-HSKPSFYRFFLV 410
Cdd:pfam00747  313 VYDPSASlDYSEWPLFENAETHADRAAALGDYNAHLAGHVGALIFSTNSVLYLTEVPDAGnKADPSDkHQESLLNRFFFT 392

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     411 PGTHVAANPQLDREGHVVPGyegrPTAPLVGGTQ-EFAGEHLAMLCGFSPALLAKMLFYLERCDGGViVGRQEMDVFRYV 489
Cdd:pfam00747  393 NGLHTAADPTVDDAGKVVFS----GKFQGTSGSDeEYSPEHLAYACGFSPQLLARLLFYLERCSVGA-KSTGNAEVLKYV 467

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     490 ADSGQTDVpCNLCTFETRHACAHTTLMRLRARHPKFASAARGAIGVFGTMNSAYSDCDVLGNYAAFSALKRADGSENTRT 569
Cdd:pfam00747  468 AGAAASLL-CELCTGTCRHSCIHTTFHRLRTRLPPVPKAQRKEPYVFGGVSRQYNDCDILGNFAPFSHLEKEDEGDDARN 546

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     570 IMQETYRAATERVMAELEALQYVDQAVPTALGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEgRNFKFRDGLAE 649
Cdd:pfam00747  547 VMSYTYRQLLQRVLDYLSKEGLIDAVTGEDTGNLESKITDIKDFVKTFDDLDQVVDEEVVQFMNELVK-RNITYREGIKS 625

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     650 ANHAMSLSLDPYTCGPCPLLQLLARRSNLAVYQDLAL-------------SQCHGVFAGQSVEG--RNFRNQFqpvlrrr 714
Cdd:pfam00747  626 ATHSFNLDLNPYATAFCPMLTFLYYRSVLAILQDLALiiamsyevdnpltGQSPSKWLKQHYQTicGNFRSSA------- 698

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     715 vmdlFNNGFLSAKTLTVALSEGAAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFagasanaseAAKARV 794
Cdd:pfam00747  699 ----LDKGFLSTKEIKVVHSEGFCDLADFDSALQGRYAGRTMEVKLARVSVLVLKEIRIKNRVVF---------SASARK 765

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     795 ASLQSAYQKPD--KRVDILLGPLGFLLKQFHAVIFPNGKppgsnqPNPQWFWTALQRNQLPARLLS--REDIETIAFIKR 870
Cdd:pfam00747  766 AGLQSSFFKSAtkKRKNILKGPLGFLLKRYHEKLFPNGK------LSCLYFWQKFQRNQLPVSLLIgrEEFIELINFVKR 839

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     871 FSLDYGAINFINLAPNNVSELAMYYMANQILRYCDHSTYFINTLTAVIagsrrpPSVQAAAAW---APQGGAGLEAGARA 947
Cdd:pfam00747  840 VSKDYDESNVIDIQPTCLLTYAKFRFHNKILRYCGHTQFYISTLQGLV------PRLQTQNAWlfpHVLGDAPIESSAAA 913

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     948 LMDSLDAHPGAWTSMFASCNLLRPVMAARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLGGKNACPLLIFDRT------ 1021
Cdd:pfam00747  914 YLEAVKKLPAAWTATFTSTNLLRTVMKQRPLVTLGLSVSKYTGINGNTQVFQAGNLGYFMGRGVDRNLLIFDNTgsrrqq 993

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    1022 ------RKFVLACPRAGFVCAASSLGG-GAHEHSLCEQLRGIIAEGGA-AVASSVFVATVKSLGPRTQQLQIEDWLALLE 1093
Cdd:pfam00747  994 dyrfmrRKFVLATPRVGVLVKRSRRENvTFDEETIRGQVRSIIEAGGNdCDPEAVVAAEVRALGERCEIPTIDDWLFLVD 1073

                         1130      1140      1150      1160
                   ....*....|....*....|....*....|....*....|....*..
gi 2829740    1094 -DEYLSEEMMEFTTRALERGHGEWSTDAALEVAH---EAEALVSQLG 1136
Cdd:pfam00747 1074 gDEFLADSLMELHAQIAESGVTDWSVEAAREVLEtnaQEEAAGDGGG 1120
 
Name Accession Description Interval E-value
PHA03362 PHA03362
single-stranded binding protein UL29; Provisional
 16-1196 0e+00

single-stranded binding protein UL29; Provisional


Pssm-ID: 223056  Cd Length: 1189  Bit Score: 1852.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     16 GPMGYVYGRACPAEGLELLSLLSARSGDADVAVAPLIVGLTVESGFEANVAAVVGSRTTGLGGTAVSLKLMPSHYSPSVY 95
Cdd:PHA03362   13 GPLGYVYARPRDDEDLEELSLLSARSRDSDVAVAPLIRGLTVERDFVVNVAVVAGSKTTGLGGGGITLKLTPSHFHPNVF 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     96 VFHGGRHLAPSTQAPNLTRLCERARPHFGFADYAPRPCDLKHETTGDALCERLGLDPDRALLYLVITEGFREAVCISNTF 175
Cdd:PHA03362   93 VFHGGECISPSSEAPNLTRLCEEARRRFGFSSYAPPPVDNAVETTGEAICARLGLDPERTLLYLVVTEGFKEAVYACNTF 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    176 LHLGGMDKVTIGDAEVHRIPVYPLQMFMPDFSRVIADPFNCNHRSIGENFNYPLPFFNRPLARLLFEAVVGPAAVALRAR 255
Cdd:PHA03362  173 LHYGGADTVTIGSAEVRRIPLYPVQLFMPDVNRLAADPFNAKSRSIGEGFVYPKPFYNDALCRLLHGYVLGPAAVALRVR 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    256 NVDAVARAAAHLAFDENHEGAALPADITFTAFEASQGKPQRGARDAGNKGPAGGFEQRLASVMAGDAALALESIVSMAVF 335
Cdd:PHA03362  253 NLDAVARGAAHLAFDENHEGAVLPADKTFTGFDSTQGKSGRGDGSGGKLSAGGGDERRLASVMAADLALSIESVVSDSVY 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    336 DEPPPDITTWPLLEGQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAGPADPKDH-SKPSFYRFFLVPGTH 414
Cdd:PHA03362  333 DEPPPDVSEWPMLCGAEGHAERLEALGAYMARLAGLVGAMVFSSNSVLYMTEVDDGGAADGKDGgSNPSFYRFYLIAAPH 412

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    415 VAANPQLDREGHVVPGYEGRPTAPLVGGTQEFAGEHLAMLCGFSPALLAKMLFYLERCDGGVIVGRQEMDVFRYVADSGQ 494
Cdd:PHA03362  413 LAGNPQVDRDGRVLPGTRDVPAAGTSGSDQEFSPDHLALACGFSPQLLARLLFYLERCDAGAFGGRGDLDALKYVASSLD 492

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    495 TDVPCNLCTFETRHACAHTTLMRLRARHPKFASAARGAIGVFGTMNSAYSDCDVLGNYAAFSALKRADGSENTRTIMQET 574
Cdd:PHA03362  493 ADVPCELCDGRTRHACAHTTLHRLRTRLPRFGAPLRGPIGVFGTMNSAYSDCDVLGNYAPYSALKRGGGGEAARAVMQDT 572

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    575 YRAATERVMAELEALQYVDQAVPTaLGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEGRNFKFRDGLAEANHAM 654
Cdd:PHA03362  573 YRATLERVMDYLEKEGLIDPDTPT-SGEDTSIIRDRASFMTALSNLNRTVDEEAEQFMRNLVEARDYKIREGLAEANHTF 651

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    655 SLSLDPYTCGPCPLLQLLARRSNLAVYQDLALSQCHGVFAGQSVEGRNFRNQFQPVLRRRVMDLFNNGFLSAKTLTVALS 734
Cdd:PHA03362  652 SLSLDPYSSGFCPVLSFLYRRTVLAVVQDLALSQCHGVFAGQQVEGRNFRNQFQPVLRRRFMDLLNKGFLTTKTVTVTLS 731

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    735 EGaAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFAGASANASEAAKARVASLQSAYQKPDKRVDILLGP 814
Cdd:PHA03362  732 ES-AVMAPDLTASQTEPAIKSMEGDLARVSVEVLRELRVKNRVVFSGGGANASEAARARVAGMASAYQRPDKRVNILNGP 810

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    815 LGFLLKQFHAVIFPNGKPPGSNQPNPQWFWTALQRNQLPARLLSREDIETIAFIKRFSLDYGAINFINLAPNNVSELAMY 894
Cdd:PHA03362  811 LGFLLKQFHDALFPNGKPPGSDTPNPQWFWTLLQRNQLPASLLSKEDIETIAFVKRFTDEYAAINFINLTPNNIGELAQF 890

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    895 YMANQILRYCDHSTYFINTLTAVIAGSRRPPSVQAAAawapqGGAGLEAGARALMDSLDAHPGAWTSMFASCNLLRPVMA 974
Cdd:PHA03362  891 YFANLILKYCDHSQYFINTLTAILVGSRRPRDPAALA-----GGPDVESAAEYVLEKLAGRPAAWTATFSSTNLVRSVMA 965

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    975 ARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLGGKNACPLLIFDRTRKFVLACPRAGFVCAASSLGGGAHEHSLCEQLR 1054
Cdd:PHA03362  966 TRPLVVLGLSISKYHGMAGNNRVFQAGNWGGLNGGKNVCPLLSFDRTRRFVLACPRVGFVCESGGFGSGFREDTLREQVR 1045

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740   1055 GIIAEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMEFTTRALERGHGEWSTDAALEVAHEAEALVSQ 1134
Cdd:PHA03362 1046 AILDSGGAAVQTAVYAAALKMLGERGQHMELDDWLALVDDEYLAASLVELNARVIERGGGDWSVEAALEVLKELEAGATA 1125

                        1130      1140      1150      1160      1170      1180
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2829740   1135 ---LGAAGEVFNFGDFGDEDDHaasFGGLAAAAGAAGVARKRAFHGDDPFGEGPPEKKD--LTLDML 1196
Cdd:PHA03362 1126 gggPAGGGEAFDFGACDDDDED---AADAGAISAPAAGGVKRPGDDDDLFDLPAPPEKRpgLTLDML 1189
Viral_DNA_bp pfam00747
ssDNA binding protein; This protein is found in herpesviruses and is needed for replication.
 16-1136 0e+00

ssDNA binding protein; This protein is found in herpesviruses and is needed for replication.


Pssm-ID: 395604  Cd Length: 1120  Bit Score: 1315.89  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740      16 GPMGYVYGRACPAEGLELLSLLS--ARSGDADVAVAPLIVGLTVESGFEANVAAVVGSRTTGlggtavSLKLMPSHYSPS 93
Cdd:pfam00747   14 GPAGYIYFYPKSNETIDLEEASLlcARSSDSSVAIAPLLSGLTVESDFSTNVKAVHGTRDGG------TLLLKVTSFHPS 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740      94 VYVFHGGRHLAPSTQAPNLTRLCERARPHFGFADYAPRPCDLKHETTGDALCERLGLDPDRALLYLVITEGFREAVCISN 173
Cdd:pfam00747   88 VYVFHGTEHILPIFEAPGLTRLCEDAREKFGFSAFPPVPVANRRETDGEALCAALGLDPDSTLLYVVVTEGFKEALYAGN 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     174 TFLHLGGMDKVTIGDAEVHRIPVYPLQMFMpdfSRVIADPFNCNHRSIGENFNYPLPFFNRPLARLLFEAVVGPAAVALR 253
Cdd:pfam00747  168 LFPHPGGADKVQIGGGEVVRIPLYPVQLFM---SRLCDNPFDTNSRSIGEGFVYPRPFYNPALSRLLHYAVFTSWAQALR 244

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     254 ARNVDAVARAAAHLAFDENHEGAALPADITFTAFeasqgkpqrgarDAGNKGPAGGFEQRLASVMAGDAALALESIVSMA 333
Cdd:pfam00747  245 VRNVEAVIRAALKQAFQDNHEGAKLAPDKTFTGF------------SSQKISAQEGDELMLADSVAAELALSYASIFLDA 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     334 VFDEPPP-DITTWPLLEGQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAG-PADPKD-HSKPSFYRFFLV 410
Cdd:pfam00747  313 VYDPSASlDYSEWPLFENAETHADRAAALGDYNAHLAGHVGALIFSTNSVLYLTEVPDAGnKADPSDkHQESLLNRFFFT 392

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     411 PGTHVAANPQLDREGHVVPGyegrPTAPLVGGTQ-EFAGEHLAMLCGFSPALLAKMLFYLERCDGGViVGRQEMDVFRYV 489
Cdd:pfam00747  393 NGLHTAADPTVDDAGKVVFS----GKFQGTSGSDeEYSPEHLAYACGFSPQLLARLLFYLERCSVGA-KSTGNAEVLKYV 467

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     490 ADSGQTDVpCNLCTFETRHACAHTTLMRLRARHPKFASAARGAIGVFGTMNSAYSDCDVLGNYAAFSALKRADGSENTRT 569
Cdd:pfam00747  468 AGAAASLL-CELCTGTCRHSCIHTTFHRLRTRLPPVPKAQRKEPYVFGGVSRQYNDCDILGNFAPFSHLEKEDEGDDARN 546

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     570 IMQETYRAATERVMAELEALQYVDQAVPTALGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEgRNFKFRDGLAE 649
Cdd:pfam00747  547 VMSYTYRQLLQRVLDYLSKEGLIDAVTGEDTGNLESKITDIKDFVKTFDDLDQVVDEEVVQFMNELVK-RNITYREGIKS 625

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     650 ANHAMSLSLDPYTCGPCPLLQLLARRSNLAVYQDLAL-------------SQCHGVFAGQSVEG--RNFRNQFqpvlrrr 714
Cdd:pfam00747  626 ATHSFNLDLNPYATAFCPMLTFLYYRSVLAILQDLALiiamsyevdnpltGQSPSKWLKQHYQTicGNFRSSA------- 698

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     715 vmdlFNNGFLSAKTLTVALSEGAAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFagasanaseAAKARV 794
Cdd:pfam00747  699 ----LDKGFLSTKEIKVVHSEGFCDLADFDSALQGRYAGRTMEVKLARVSVLVLKEIRIKNRVVF---------SASARK 765

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     795 ASLQSAYQKPD--KRVDILLGPLGFLLKQFHAVIFPNGKppgsnqPNPQWFWTALQRNQLPARLLS--REDIETIAFIKR 870
Cdd:pfam00747  766 AGLQSSFFKSAtkKRKNILKGPLGFLLKRYHEKLFPNGK------LSCLYFWQKFQRNQLPVSLLIgrEEFIELINFVKR 839

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     871 FSLDYGAINFINLAPNNVSELAMYYMANQILRYCDHSTYFINTLTAVIagsrrpPSVQAAAAW---APQGGAGLEAGARA 947
Cdd:pfam00747  840 VSKDYDESNVIDIQPTCLLTYAKFRFHNKILRYCGHTQFYISTLQGLV------PRLQTQNAWlfpHVLGDAPIESSAAA 913

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     948 LMDSLDAHPGAWTSMFASCNLLRPVMAARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLGGKNACPLLIFDRT------ 1021
Cdd:pfam00747  914 YLEAVKKLPAAWTATFTSTNLLRTVMKQRPLVTLGLSVSKYTGINGNTQVFQAGNLGYFMGRGVDRNLLIFDNTgsrrqq 993

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    1022 ------RKFVLACPRAGFVCAASSLGG-GAHEHSLCEQLRGIIAEGGA-AVASSVFVATVKSLGPRTQQLQIEDWLALLE 1093
Cdd:pfam00747  994 dyrfmrRKFVLATPRVGVLVKRSRRENvTFDEETIRGQVRSIIEAGGNdCDPEAVVAAEVRALGERCEIPTIDDWLFLVD 1073

                         1130      1140      1150      1160
                   ....*....|....*....|....*....|....*....|....*..
gi 2829740    1094 -DEYLSEEMMEFTTRALERGHGEWSTDAALEVAH---EAEALVSQLG 1136
Cdd:pfam00747 1074 gDEFLADSLMELHAQIAESGVTDWSVEAAREVLEtnaQEEAAGDGGG 1120
PHA03367 PHA03367
single-stranded DNA binding protein; Provisional
 44-1150 5.14e-105

single-stranded DNA binding protein; Provisional


Pssm-ID: 223059  Cd Length: 1115  Bit Score: 357.39  E-value: 5.14e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740     44 ADVAVAPLIVGLTVESGFEANVAAVVgsrtTGLGGTAVSLKLmpSHYSPSVYVFHGGRHLAPSTQAPNLTRLCERARPHF 123
Cdd:PHA03367   41 SSVVSLPLLCGLTVEPDFSFNVKAPH----KKIDPGTVLVKV--TSFHREAIVFHNTDKFPPIFEGPGLERLCEETREKF 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    124 GFADYAPRPcdLKHETTGDALCErLGLDPDRALLYLVITEGFREavcisntFLHLGG-------MDKVTIGDAEVHRIPV 196
Cdd:PHA03367  115 GYTSFVPPG--SRGPTDLADLCP-AGLDPDEVIGAVVVTEGFKE-------RLYAGNlvpcvseAQQVQIGGCEAVKVPL 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    197 YPLQMFMPdfsrviadpfncnhrsigENFNYPLPFFNRPLARLLFEAVVGPAAVALRARNVDAVARAAAHLAFDENHEGA 276
Cdd:PHA03367  185 YDETLFEK------------------TSFVQLRGFYNPAVSEYLFYSLYTSWAQALRVRDVKELIEALEKQFVQDQYKTA 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    277 ALPADITFTAFEASqgkpqrgardAGNKGpaggfeqrlaSVMAGDAALAlESIVS--MAVFDEP--PPDI---TTWPLLE 349
Cdd:PHA03367  247 KLAPLKEYPAQKLS----------APDKD----------ALMLVDSVAC-ELAFSygLSFLEAPqePSAIlnyDSWPIFE 305

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    350 GQETPAARAGAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAgPADPKDHSKPSFYR-FFLVPGTHVAANPQLDREGhvV 428
Cdd:PHA03367  306 NCETPEDRIKALTEWNAHLAIHVAAQLFSTNSVLYVTRVAKQ-ASVNTGKGQENLLNsFYMQHGLGSLCEDTYNENG--L 382

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    429 PGYEGRPTAPLVGGTqeFAGEHLAMLCGFSPALLAKMLFYLERCDGGVIVGRQEMDVFRYVADSGQTDVpCNLCTFETRH 508
Cdd:PHA03367  383 PKFSGVPGKDLDGSS--YTLHHLAYAASFSPQLLARYCYYLQFCQHQKSSLNQSYEIPNYVGTAANSPL-CELCGGKCPA 459

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    509 ACAHTTLMRLRARHPKFASAARGAIGVFgTMNS-AYSDCDVLGNYAAFSAlKRADGSENTRTiMQETYRAATERVMAELE 587
Cdd:PHA03367  460 VCINTLFYRLRDRFPPVLKTQRRDPYVV-TGVSgFYNDLDILGNFGRFRD-KEDDGNQREET-PSYTYWQLNQNILEYLS 536

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    588 ALQYVDqavptALGRLETIIGNREALHTVVNNIKQLVDREVEQLMRNLIEgRNFKFRDGLAEANHAMSLSLDPYTCGPCP 667
Cdd:PHA03367  537 KMGLID-----VTGEDTKLITGIRDFVKVFKDIDAIVDAEVSKFINEMVK-NNINFRESIKSCHHVLQYDCNPYAQAPCP 610

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    668 LLQLLARRSNLAVYQDLALSQC---------HGVFAG-------QSVEGrNFRNQFqpvlrrrvmdlFNNGFLSAKTLTV 731
Cdd:PHA03367  611 VFLNLYYRSILTIIQDIALPICmsyevdnplTGNSPSewlkqhyQTLWT-NFKSSC-----------IDKGVLTGKEVKV 678

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    732 ALSE--------GAAIcapsltAGQTAPAesSFEGDVARVTLGFPKELRVKSRVLFAGASanaseaakarvASLQSAYQK 803
Cdd:PHA03367  679 VHNEdfcdlfdlDAAL------NGTYAPV--KMQVRLSRASMLCPKNIKIKNRIIFSNSK-----------EALQNGFFK 739

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    804 PDKRVD--ILLGPLGFLLKQFHAVIFPNGKPPgsnqpnPQWFW-TALQRNQLP-ARLLSREDI-ETIAFIKRFSLDYGAI 878
Cdd:PHA03367  740 STHKRDnyIVAGPYMKFLNSYHKRLFPNTKIS------CLYLWhKFSSNKQPPvLPGGSAEELnEFAKFVETNSRAHEEI 813

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    879 NFINLAPNNVSELAMYYMANQILRYCDHSTYFINTLTAVIAGSRRPPSVQAAAAWAPQGGAGLEAGARALMDsLDAhPGA 958
Cdd:PHA03367  814 NVLDVVPDCLLTYAKQRLNNAILRACGQTQFYATTLHGLTPKLQTVPAEEYPHVLGTQPFSSVAEYLLHVKN-LTA-TTV 891

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740    959 WTSMFAScnlLRPVMAARPMVVLGLSISKYYGMAGNDRVFQAGNWASLLG---GKNACPLLIFDRT-------RKFVLAC 1028
Cdd:PHA03367  892 QSPLRES---VATVFKSRPIVTVPLVVNKYTGVNGNNQIFQFGNLGYFMGrgvDRNLLPNSPFKKQqdssfmrKRHVFAT 968

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2829740   1029 PRAGFVCAASSLGGGAHEhslCEQLRG----IIAEGGA-AVASSVFVATVKSLGPRTQQLQIEDWLALLeDEY--LSEEM 1101
Cdd:PHA03367  969 PLVDVLVKRSRREAVTFE---IETIRRrvqaILEDKDNeNVVDPVVLELVKILGDRCASLTSDDVLFYL-GGYeiLADSV 1044

                        1130      1140      1150      1160
                  ....*....|....*....|....*....|....*....|....*....
gi 2829740   1102 MEFTTRALERGhGEWSTDAALEVAHEAEAlvsqlGAAGEVFNFGDFGDE 1150
Cdd:PHA03367 1045 MEKLQTLADSG-VDWSLENARSVLEAVAD-----APGGDELEFVAVEEP 1087
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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