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Conserved domains on  [gi|614114437|sp|P9WH17|]
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RecName: Full=Ribosome maturation factor RimP

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10011230)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Gene Symbol:  rimP
Gene Ontology:  GO:0000028|GO:0042274|GO:0006412
PubMed:  19150615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-157 5.02e-44

ribosome maturation protein RimP; Reviewed


:

Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 143.02  E-value: 5.02e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437   3 TGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGldgANKIRGRYLLE 82
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV---EDPIPGAYTLE 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 614114437  83 VSSPGVERPLTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRAGTVALVIREdrGWAVREIPLAEIVKAVVQVEF 157
Cdd:PRK00092  78 VSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLAVDGETVTLEVEG--KEKEVEIPLDNIAKARLVVEF 154
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-157 5.02e-44

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 143.02  E-value: 5.02e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437   3 TGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGldgANKIRGRYLLE 82
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV---EDPIPGAYTLE 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 614114437  83 VSSPGVERPLTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRAGTVALVIREdrGWAVREIPLAEIVKAVVQVEF 157
Cdd:PRK00092  78 VSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLAVDGETVTLEVEG--KEKEVEIPLDNIAKARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
10-157 1.58e-35

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 121.38  E-value: 1.58e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGankIRGRYLLEVSSPGVE 89
Cdd:COG0779    7 RLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDP---IPGAYTLEVSSPGLD 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 614114437  90 RPLTSEKHFRRARGRKVELVLSD----GSRLTGRVGEMRAGTVALVIREdrgwAVREIPLAEIVKAVVQVEF 157
Cdd:COG0779   84 RPLKKPRDFERFIGRLVKVKLREpidgRKKFTGRLLGVDDDGVTLEVDG----KEVEIPLDDIAKARLVIEF 151
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 87-157 4.42e-13

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 61.31  E-value: 4.42e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 614114437  87 GVERPLTSEKHFRRARGRKVELVLSD----GSRLTGRVGEMRAGTVALVIREDRgwaVREIPLAEIVKAVVQVEF 157
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGELLGVDDDTVTLEVDDGK---EVEIPFDNIAKARLVPEF 72
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 23-89 1.38e-09

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 52.22  E-value: 1.38e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 614114437   23 GYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVE 89
Cdd:pfam02576  10 GFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVED---PISGEYTLEVSSPGLD 73
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-157 5.02e-44

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 143.02  E-value: 5.02e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437   3 TGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGldgANKIRGRYLLE 82
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV---EDPIPGAYTLE 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 614114437  83 VSSPGVERPLTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRAGTVALVIREdrGWAVREIPLAEIVKAVVQVEF 157
Cdd:PRK00092  78 VSSPGLDRPLKKARDFRRFIGREVKVKLYepidGRKKFQGILLAVDGETVTLEVEG--KEKEVEIPLDNIAKARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
10-157 1.58e-35

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 121.38  E-value: 1.58e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGankIRGRYLLEVSSPGVE 89
Cdd:COG0779    7 RLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDP---IPGAYTLEVSSPGLD 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 614114437  90 RPLTSEKHFRRARGRKVELVLSD----GSRLTGRVGEMRAGTVALVIREdrgwAVREIPLAEIVKAVVQVEF 157
Cdd:COG0779   84 RPLKKPRDFERFIGRLVKVKLREpidgRKKFTGRLLGVDDDGVTLEVDG----KEVEIPLDDIAKARLVIEF 151
PRK14645 PRK14645
ribosome maturation factor RimP;
23-147 1.20e-14

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 67.49  E-value: 1.20e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  23 GYEIEDVVIDARARPPRIAVIAD--GDAPLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVERPLTSEKHFRR 100
Cdd:PRK14645  23 GYEVLEVQVQRSGGKRIVLVRIDrkDEQPVTVEDLERASRALEAELDRLD---PIEGEYRLEVESPGPKRPLFTARHFER 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 614114437 101 ARGRKVElVLSDGSRLTGRVGEMRAGTVA-LVIREDRGWAVREIP--LAE 147
Cdd:PRK14645 100 FAGLKAK-VRGPGENFTGRIKAVSGDQVTfDVGGEDRTLRIGTFQanLAE 148
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 87-157 4.42e-13

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 61.31  E-value: 4.42e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 614114437  87 GVERPLTSEKHFRRARGRKVELVLSD----GSRLTGRVGEMRAGTVALVIREDRgwaVREIPLAEIVKAVVQVEF 157
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEpidgRKKFTGELLGVDDDTVTLEVDDGK---EVEIPFDNIAKARLVPEF 72
PRK14647 PRK14647
ribosome maturation factor RimP;
10-157 6.27e-13

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 63.23  E-value: 6.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVE 89
Cdd:PRK14647   9 RVTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVED---FIPERYTLEVSSPGLD 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 614114437  90 RPLTSEKHFRRARGRKVEL----VLSD--GSR---LTGRVGEMRAGTVALVIREdrGWAVReIPLAEIVKAVVQVEF 157
Cdd:PRK14647  86 RPLKKEADYERYAGRLVKVrtfeLLADeaGNKrktFLGELEGLADGVVTIALKE--GQQAR-IPLDKIAKANLEFEF 159
PRK14639 PRK14639
ribosome maturation factor RimP;
39-157 1.50e-11

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 59.06  E-value: 1.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  39 RIAVIADGDapLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTG 118
Cdd:PRK14639  29 RVYITKEGG--VNLDDCERLSELLSPIFDVEP---PVSGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFEG 103

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 614114437 119 RVGEMRAGTVALVIREDRGwaVREIPLAEIVKAVVQVEF 157
Cdd:PRK14639 104 KIVSVDDENITLENLENKE--KTTINFNDIKKAKTYVEW 140
PRK14638 PRK14638
ribosome maturation factor RimP;
23-157 1.68e-11

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 59.11  E-value: 1.68e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  23 GYEIEDVVIDARARPPRIAVIADGdaPLDLDTIAALSRRASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRAR 102
Cdd:PRK14638  22 GLEIFDVQYRRESRGWVLRIIIDN--PVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDYVRFT 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 614114437 103 GRKVELVLSDGSRLTGRVGEMRAGTVALvireDRGWAVREIPLAEIVKAVVQVEF 157
Cdd:PRK14638 100 GKLAKIVTKDGKTFIGRIESFVDGTITI----SDEKEKYEINIDDVKRANLEVEF 150
PRK14640 PRK14640
hypothetical protein; Provisional
 8-110 9.88e-10

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 54.63  E-value: 9.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437   8 QRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPG 87
Cdd:PRK14640   5 EQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVED---PITEEYYLEVSSPG 81

                         90       100
                 ....*....|....*....|...
gi 614114437  88 VERPLTSEKHFRRARGRKVELVL 110
Cdd:PRK14640  82 LDRPLFKVAQFEKYVGQEAAVTL 104
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 23-89 1.38e-09

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 52.22  E-value: 1.38e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 614114437   23 GYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVE 89
Cdd:pfam02576  10 GFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDVED---PISGEYTLEVSSPGLD 73
PRK14636 PRK14636
ribosome maturation protein RimP;
50-151 7.80e-09

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 52.48  E-value: 7.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  50 LDLDTIAALSRRASallDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGR--KVELV--LSDGSRLTGRVGEMRA 125
Cdd:PRK14636  48 LVIEDCAALSRRLS---DVFDELDPIEDAYRLEVSSPGIDRPLTRPKDFADWAGHeaRIALSepLDGRKQFRGELKGIDG 124

                         90       100
                 ....*....|....*....|....*.
gi 614114437 126 GTVALVIREDrgwAVREIPLAEIVKA 151
Cdd:PRK14636 125 DTVTIADNKA---GEVILPFAAIESA 147
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 92-157 3.74e-07

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 45.31  E-value: 3.74e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437   92 LTSEKHFRRARGRKVELVLS----DGSRLTGRVGEMRAGTVALvirEDRGWAVREIPLAEIVKAVVQVEF 157
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKlpidGRKKFQGKIVAVDGETITL---EVDGKTEVTIPFDDIDKARLVPEF 67
PRK02001 PRK02001
ribosome assembly cofactor RimP;
39-153 3.12e-06

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 44.97  E-value: 3.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  39 RIAVIADGDAPLDLDTIAALSRrasALLDGLDganKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTG 118
Cdd:PRK02001  32 KIVVEIDGDEGVWIEDCVELSR---AIEHNLD---REEEDFELEVGSAGLTSPLKVPRQYKKNIGRELEVLTKNGKKIEG 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 614114437 119 RVGEMRAG--TVALVIREDRGWAVR--------EIPLAEIVKAVV 153
Cdd:PRK02001 106 ELKSADENdiTLEVKAREPKEGGKGkvtvekeeTITYDDIKEAKV 150
PRK14642 PRK14642
ribosome maturation factor RimP;
69-140 1.36e-04

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 41.00  E-value: 1.36e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 614114437  69 LDGANKIRgrylLEVSSPGVERPLTSEKHFRRARGRKVELVLSD--GSRLTGRVGEMRA---GTVALVirEDRGWAV 140
Cdd:PRK14642  70 VDGVDYKR----LEVSSPGIDRPLRHEQDFERFAGEVIDITLKApiGAAAGGQVSANRKkfrGTLERA--ESGGWQI 140
PRK14646 PRK14646
ribosome maturation factor RimP;
24-150 1.71e-04

ribosome maturation factor RimP;


Pssm-ID: 173109 [Multi-domain]  Cd Length: 155  Bit Score: 39.93  E-value: 1.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  24 YEIEDVVIDARARPPRIAVI---ADGDaPLDLDTIAALSRRASallDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRR 100
Cdd:PRK14646  22 LKICSLNIQTNQNPIVIKIIikkTNGD-DISLDDCALFNTPAS---EEIENSNLLNCSYVLEISSQGVSDELTSERDFKT 97

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 614114437 101 ARGRKVELVLSDGSR----LTGRVGEMRAGTVALVIREdrgwAVREIPLAEIVK 150
Cdd:PRK14646  98 FKGFPVNVELNQKNSkikfLNGLLYEKSKDYLAINIKG----KIKKIPFNEVLK 147
PRK14632 PRK14632
ribosome maturation factor RimP;
47-111 4.70e-04

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 38.89  E-value: 4.70e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 614114437  47 DAP--LDLDTIAALSRRASALLDGLDganKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLS 111
Cdd:PRK14632  43 DGPegVTIDQCAEVSRHVGLALEVED---VISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLI 106
PRK14643 PRK14643
ribosome maturation factor RimP;
43-101 6.50e-04

ribosome maturation factor RimP;


Pssm-ID: 173106 [Multi-domain]  Cd Length: 164  Bit Score: 38.72  E-value: 6.50e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 614114437  43 IADGDAPLDLDTIAALSRRASALLDGLDGANKirgRYLLEVSSPGVERPLTSEKHFRRA 101
Cdd:PRK14643  47 ILQANKPLDFDILIKANDLVSNKIDQFIKTSE---KYLLEISSSGIEKQIRSQEELVKA 102
PRK14634 PRK14634
ribosome maturation factor RimP;
23-160 1.20e-03

ribosome maturation factor RimP;


Pssm-ID: 173097 [Multi-domain]  Cd Length: 155  Bit Score: 37.85  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  23 GYEIEDVVIDARARPPRIAVI---ADGDaPLDLDTIAALSrraSALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFR 99
Cdd:PRK14634  21 GFELCGIQVLTHLQPMTLQVQirrSSGS-DVSLDDCAGFS---GPMGEALEASQLLTEAYVLEISSPGIGDQLSSDRDFQ 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 614114437 100 RARGRKVELVLSDGS----RLTGRVGEMRAGTVALVIREdrgwAVREIPLaeivKAVVQVEFSPP 160
Cdd:PRK14634  97 TFRGFPVEVSHRDDDgseqRLEGLLLERNEDHLQINIRG----RIKRIPR----DSVISVRLTNP 153
PRK14631 PRK14631
ribosome maturation factor RimP;
56-110 2.89e-03

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 36.79  E-value: 2.89e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 614114437  56 AALSRRASALLDGLDganKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVL 110
Cdd:PRK14631  73 VRVTQQVGAMLDVHD---PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRL 124
PRK14641 PRK14641
ribosome maturation factor RimP;
28-112 4.22e-03

ribosome maturation factor RimP;


Pssm-ID: 173104 [Multi-domain]  Cd Length: 173  Bit Score: 36.29  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 614114437  28 DVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGR-YLLEVSSPGVERPLTSEKHFRRARGRKV 106
Cdd:PRK14641  28 SMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLVGEdFDLMVSSPGLGEPIILPRQYGRHVGRLL 107


                 ....*.
gi 614114437 107 ELVLSD 112
Cdd:PRK14641 108 RVTYRD 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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