|
Name |
Accession |
Description |
Interval |
E-value |
| ARO8 |
COG1167 |
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ... |
2-450 |
9.51e-152 |
|
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 440781 [Multi-domain] Cd Length: 471 Bit Score: 439.65 E-value: 9.51e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 2 KPGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNPDLLLPAT-PAPA 80
Cdd:COG1167 11 GPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARLPAPAPaPRAA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 81 DHTTGTLPASLISQRERAGFLRPGIPSLDSFPYKKWLLLAGQATRSMRPEEMLNPPVLGWYPLRQAIARYLNiSRGLSCT 160
Cdd:COG1167 91 AAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPELREAIARYLA-RRGVPAS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 161 AEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYL--LHHHRDARFAIVTP 238
Cdd:COG1167 170 PDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLDALeaALRRHRPRAVYVTP 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 239 SHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRHDRVIFMGTFSKTIMPSLRMGYIVMPA 318
Cdd:COG1167 250 SHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGSFSKTLAPGLRLGYLVAPG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 319 STVEAFTDCADIVASGQPVLTQKILTTFLNEGHFFRHLKKMRALYQTRREWMIAALREVYGDLFFTEQNDGGMHIVAFLA 398
Cdd:COG1167 330 RLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPDGLRVTGPPGGLHLWLELP 409
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1238454442 399 KGSNDREVACCWQAQQLQVNALSEWYRGSGKRYGLVMGYNNVRS--YQEAVDLL 450
Cdd:COG1167 410 EGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEeeLEEALRRL 463
|
|
| AAT_like |
cd00609 |
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
104-407 |
2.27e-54 |
|
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.
Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 185.24 E-value: 2.27e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 104 GIPSLDSFPYKKWLLLAGQAtrsmRPEEMLNPPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLAS 183
Cdd:cd00609 6 GEPDFPPPPEVLEALAAAAL----RAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 184 RSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYL----LHHHRDARFAIVTPsHQSPLAVTLSLPRKQQLLDW 259
Cdd:cd00609 82 PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLelleAAKTPKTKLLYLNN-PNNPTGAVLSEEELEELAEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 260 ASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRHDRVIFMGTFSKTI-MPSLRMGYIVMPASTV-EAFTDCADIVASGQPV 337
Cdd:cd00609 161 AKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFgLPGLRIGYLIAPPEELlERLKKLLPYTTSGPST 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 338 LTQKILTTFLNEGHffRHLKKMRALYQTRREWMIAALREVYGDLFFTEQndGGMHIVAFLAKGSNDREVA 407
Cdd:cd00609 241 LSQAAAAAALDDGE--EHLEELRERYRRRRDALLEALKELGPLVVVKPS--GGFFLWLDLPEGDDEEFLE 306
|
|
| PRK15481 |
PRK15481 |
transcriptional regulatory protein PtsJ; Provisional |
7-375 |
6.58e-24 |
|
transcriptional regulatory protein PtsJ; Provisional
Pssm-ID: 185378 [Multi-domain] Cd Length: 431 Bit Score: 103.59 E-value: 6.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 7 DIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTrvnpdlLLPATPAPadhttGT 86
Cdd:PRK15481 9 EIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGT------VIRGSPSP-----VA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 87 LPASLisqreragflrPGIPSLD---SFPYKKWL--LLAGQATRSMRP----EEMLNPPvlgwypLRQAIARYLnisrGL 157
Cdd:PRK15481 78 LEGGD-----------PGTPLHDlagGNPDPQRLpdLSRYFARLSRTPrlygDAPVSPE------LHAWAARWL----RD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 158 SCTAE-QVLITSGYSGSL-RLILDTLASrSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYLLHHHRD-ARFA 234
Cdd:PRK15481 137 DCPVAfEIDLTSGAIDAIeRLLCAHLLP-GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQgARAV 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 235 IVTPSHQSPLAVTLSLPRK---QQLLdwASQNGAWIIEDDydgefHYtrkvlpSLKSLDRHDRVIFMGT--------FSK 303
Cdd:PRK15481 216 ILTPRAHNPTGCSLSARRAaalRNLL--ARYPQVLVIIDD-----HF------ALLSSSPYHSVIPQTTqrwalirsVSK 282
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238454442 304 TIMPSLRMGYIVMPASTVEAFTDCadiVASG-QPV--LTQKILTTFLNEGHFFRHLKKMRALYQTRREWMIAALR 375
Cdd:PRK15481 283 ALGPDLRLAFVASDSATSARLRLR---LNSGtQWVshLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQ 354
|
|
| Aminotran_1_2 |
pfam00155 |
Aminotransferase class I and II; |
143-376 |
2.73e-18 |
|
Aminotransferase class I and II;
Pssm-ID: 395103 [Multi-domain] Cd Length: 351 Bit Score: 85.82 E-value: 2.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 143 LRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTL-ASRSDKVVFEDPGYFMGQQLLK--RIVPRL-HTVPVDRCG 218
Cdd:pfam00155 44 LREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLlANPGDAILVPAPTYASYIRIARlaGGEVVRyPLYDSNDFH 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 219 IDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKS-LDRHDRVIF 297
Cdd:pfam00155 124 LDFDALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRAlLAEGPNLLV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 298 MGTFSKTI-MPSLRMGYIVmpasTVEAFTDCADIVASGQ--PVLTQKILTTFLNEGHFFR-HLKKMRALYQTRREWMIAA 373
Cdd:pfam00155 204 VGSFSKAFgLAGWRVGYIL----GNAAVISQLRKLARPFysSTHLQAAAAAALSDPLLVAsELEEMRQRIKERRDYLRDG 279
|
...
gi 1238454442 374 LRE 376
Cdd:pfam00155 280 LQA 282
|
|
| HTH_GNTR |
smart00345 |
helix_turn_helix gluconate operon transcriptional repressor; |
8-67 |
1.31e-11 |
|
helix_turn_helix gluconate operon transcriptional repressor;
Pssm-ID: 197669 [Multi-domain] Cd Length: 60 Bit Score: 59.51 E-value: 1.31e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 8 IYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRV 67
Cdd:smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
|
|
| tyr_nico_aTase |
TIGR01265 |
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ... |
136-316 |
5.87e-06 |
|
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Pssm-ID: 188123 Cd Length: 403 Bit Score: 48.49 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 136 PVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLK--RIVPRLHTV- 212
Cdd:TIGR01265 71 PSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAfsGLEVRLYDLl 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 213 PVDRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRH 292
Cdd:TIGR01265 151 PEKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASI 230
|
170 180
....*....|....*....|....*
gi 1238454442 293 DRVIFMGTFSKT-IMPSLRMGYIVM 316
Cdd:TIGR01265 231 VPVLSLGGISKRwVVPGWRLGWIII 255
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ARO8 |
COG1167 |
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ... |
2-450 |
9.51e-152 |
|
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 440781 [Multi-domain] Cd Length: 471 Bit Score: 439.65 E-value: 9.51e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 2 KPGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNPDLLLPAT-PAPA 80
Cdd:COG1167 11 GPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARLPAPAPaPRAA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 81 DHTTGTLPASLISQRERAGFLRPGIPSLDSFPYKKWLLLAGQATRSMRPEEMLNPPVLGWYPLRQAIARYLNiSRGLSCT 160
Cdd:COG1167 91 AAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPELREAIARYLA-RRGVPAS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 161 AEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYL--LHHHRDARFAIVTP 238
Cdd:COG1167 170 PDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLDALeaALRRHRPRAVYVTP 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 239 SHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRHDRVIFMGTFSKTIMPSLRMGYIVMPA 318
Cdd:COG1167 250 SHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGSFSKTLAPGLRLGYLVAPG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 319 STVEAFTDCADIVASGQPVLTQKILTTFLNEGHFFRHLKKMRALYQTRREWMIAALREVYGDLFFTEQNDGGMHIVAFLA 398
Cdd:COG1167 330 RLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPDGLRVTGPPGGLHLWLELP 409
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1238454442 399 KGSNDREVACCWQAQQLQVNALSEWYRGSGKRYGLVMGYNNVRS--YQEAVDLL 450
Cdd:COG1167 410 EGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEeeLEEALRRL 463
|
|
| AAT_like |
cd00609 |
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
104-407 |
2.27e-54 |
|
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.
Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 185.24 E-value: 2.27e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 104 GIPSLDSFPYKKWLLLAGQAtrsmRPEEMLNPPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLAS 183
Cdd:cd00609 6 GEPDFPPPPEVLEALAAAAL----RAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 184 RSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYL----LHHHRDARFAIVTPsHQSPLAVTLSLPRKQQLLDW 259
Cdd:cd00609 82 PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLelleAAKTPKTKLLYLNN-PNNPTGAVLSEEELEELAEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 260 ASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRHDRVIFMGTFSKTI-MPSLRMGYIVMPASTV-EAFTDCADIVASGQPV 337
Cdd:cd00609 161 AKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFgLPGLRIGYLIAPPEELlERLKKLLPYTTSGPST 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 338 LTQKILTTFLNEGHffRHLKKMRALYQTRREWMIAALREVYGDLFFTEQndGGMHIVAFLAKGSNDREVA 407
Cdd:cd00609 241 LSQAAAAAALDDGE--EHLEELRERYRRRRDALLEALKELGPLVVVKPS--GGFFLWLDLPEGDDEEFLE 306
|
|
| AspB |
COG0436 |
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
135-376 |
2.92e-27 |
|
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis
Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 112.53 E-value: 2.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 135 PPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYF--MGQQLLKRIVPrlhtV 212
Cdd:COG0436 64 TPSAGIPELREAIAAYYKRRYGVDLDPDEILVTNGAKEALALALLALLNPGDEVLVPDPGYPsyRAAVRLAGGKP----V 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 213 PVDrCGIDTEYLL-------HHHRDARfAIV--TPShqSPLAVTLSLPRKQQLLDWASQNGAWIIEDD-YDgEFHYTRKV 282
Cdd:COG0436 140 PVP-LDEENGFLPdpealeaAITPRTK-AIVlnSPN--NPTGAVYSREELEALAELAREHDLLVISDEiYE-ELVYDGAE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 283 LPSLKSLDR-HDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGHffRHLKKMR 360
Cdd:COG0436 215 HVSILSLPGlKDRTIVINSFSKSYaMTGWRIGYAVGPPELIAALLKLQSNLTSCAPTPAQYAAAAALEGPQ--DYVEEMR 292
|
250
....*....|....*.
gi 1238454442 361 ALYQTRREWMIAALRE 376
Cdd:COG0436 293 AEYRRRRDLLVEGLNE 308
|
|
| PRK15481 |
PRK15481 |
transcriptional regulatory protein PtsJ; Provisional |
7-375 |
6.58e-24 |
|
transcriptional regulatory protein PtsJ; Provisional
Pssm-ID: 185378 [Multi-domain] Cd Length: 431 Bit Score: 103.59 E-value: 6.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 7 DIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTrvnpdlLLPATPAPadhttGT 86
Cdd:PRK15481 9 EIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGT------VIRGSPSP-----VA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 87 LPASLisqreragflrPGIPSLD---SFPYKKWL--LLAGQATRSMRP----EEMLNPPvlgwypLRQAIARYLnisrGL 157
Cdd:PRK15481 78 LEGGD-----------PGTPLHDlagGNPDPQRLpdLSRYFARLSRTPrlygDAPVSPE------LHAWAARWL----RD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 158 SCTAE-QVLITSGYSGSL-RLILDTLASrSDKVVFEDPGYFMGQQLLKRIVPRLHTVPVDRCGIDTEYLLHHHRD-ARFA 234
Cdd:PRK15481 137 DCPVAfEIDLTSGAIDAIeRLLCAHLLP-GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQgARAV 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 235 IVTPSHQSPLAVTLSLPRK---QQLLdwASQNGAWIIEDDydgefHYtrkvlpSLKSLDRHDRVIFMGT--------FSK 303
Cdd:PRK15481 216 ILTPRAHNPTGCSLSARRAaalRNLL--ARYPQVLVIIDD-----HF------ALLSSSPYHSVIPQTTqrwalirsVSK 282
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238454442 304 TIMPSLRMGYIVMPASTVEAFTDCadiVASG-QPV--LTQKILTTFLNEGHFFRHLKKMRALYQTRREWMIAALR 375
Cdd:PRK15481 283 ALGPDLRLAFVASDSATSARLRLR---LNSGtQWVshLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQ 354
|
|
| PRK05764 |
PRK05764 |
aspartate aminotransferase; Provisional |
135-379 |
7.66e-20 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 235596 Cd Length: 393 Bit Score: 90.95 E-value: 7.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 135 PPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGY--------FMGQqllkriV 206
Cdd:PRK05764 65 TPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWvsypemvkLAGG------V 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 207 PrlhtVPVDrCGIDTEYLLH-----HHRDAR---FAIVTPShqSPLAVTLSLPRKQQLLDWASQNGAWIIEDD------Y 272
Cdd:PRK05764 139 P----VFVP-TGEENGFKLTveqleAAITPKtkaLILNSPS--NPTGAVYSPEELEAIADVAVEHDIWVLSDEiyeklvY 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 273 DGEFHYTrkvLPSLkSLDRHDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGh 351
Cdd:PRK05764 212 DGAEFTS---IASL-SPELRDRTITVNGFSKAYaMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP- 286
|
250 260
....*....|....*....|....*...
gi 1238454442 352 fFRHLKKMRALYQTRREWMIAALREVYG 379
Cdd:PRK05764 287 -QDEVEEMRQAFEERRDLMVDGLNEIPG 313
|
|
| Aminotran_1_2 |
pfam00155 |
Aminotransferase class I and II; |
143-376 |
2.73e-18 |
|
Aminotransferase class I and II;
Pssm-ID: 395103 [Multi-domain] Cd Length: 351 Bit Score: 85.82 E-value: 2.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 143 LRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTL-ASRSDKVVFEDPGYFMGQQLLK--RIVPRL-HTVPVDRCG 218
Cdd:pfam00155 44 LREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLlANPGDAILVPAPTYASYIRIARlaGGEVVRyPLYDSNDFH 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 219 IDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKS-LDRHDRVIF 297
Cdd:pfam00155 124 LDFDALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRAlLAEGPNLLV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 298 MGTFSKTI-MPSLRMGYIVmpasTVEAFTDCADIVASGQ--PVLTQKILTTFLNEGHFFR-HLKKMRALYQTRREWMIAA 373
Cdd:pfam00155 204 VGSFSKAFgLAGWRVGYIL----GNAAVISQLRKLARPFysSTHLQAAAAAALSDPLLVAsELEEMRQRIKERRDYLRDG 279
|
...
gi 1238454442 374 LRE 376
Cdd:pfam00155 280 LQA 282
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
3-68 |
1.31e-16 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 74.02 E-value: 1.31e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238454442 3 PGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVN 68
Cdd:cd07377 1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66
|
|
| PRK06108 |
PRK06108 |
pyridoxal phosphate-dependent aminotransferase; |
86-360 |
1.00e-15 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180404 Cd Length: 382 Bit Score: 78.45 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 86 TLPASLISQRERAGFLRPG-IPsldsfpykkwlLLAGQ------------ATRSMRPEEMLNPPVLGWYPLRQAIARYLN 152
Cdd:PRK06108 7 ALPESGIREVANAGRGREGvLP-----------LWFGEsdlptpdfirdaAAAALADGETFYTHNLGIPELREALARYVS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 153 ISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGY--FMGQQLLKRIVPRlhTVPVDRCG----IDTEYLLh 226
Cdd:PRK06108 76 RLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWpnLVAAPKILGARVV--CVPLDFGGggwtLDLDRLL- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 227 hhrdarfAIVTP--------SHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHY-TRKVLPS-LKSLDRHDRVI 296
Cdd:PRK06108 153 -------AAITPrtralfinSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYaPGGRAPSfLDIAEPDDRII 225
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 297 FMGTFSKT-IMPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEG-----HFFRHLKKMR 360
Cdd:PRK06108 226 FVNSFSKNwAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGedfvaELVARLRRSR 295
|
|
| YhcF |
COG1725 |
DNA-binding transcriptional regulator YhcF, GntR family [Transcription]; |
2-70 |
3.76e-15 |
|
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
Pssm-ID: 441331 [Multi-domain] Cd Length: 114 Bit Score: 71.36 E-value: 3.76e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238454442 2 KPGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNPD 70
Cdd:COG1725 9 VPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAED 77
|
|
| HisC |
COG0079 |
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid ... |
138-376 |
9.75e-14 |
|
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid transport and metabolism]; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 439849 [Multi-domain] Cd Length: 341 Bit Score: 72.09 E-value: 9.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 138 LGWYP------LRQAIARYLNISrglsctAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLKRIVPRLHT 211
Cdd:COG0079 42 LNRYPdpdataLREALAEYYGVP------PEQVLVGNGSDELIQLLARAFLGPGDEVLVPEPTFSEYPIAARAAGAEVVE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 212 VPVDR-CGIDTE-YLLHHHRDARFAIVTpshqSPLAVTLSLPRKQQLLDWASQN--GAWIIEDdydgE--FHYTRKVLPS 285
Cdd:COG0079 116 VPLDEdFSLDLDaLLAAITERTDLVFLC----NPNNPTGTLLPREELEALLEALpaDGLVVVD----EayAEFVPEEDSA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 286 LKSLDRHDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCAdivasgQP----VLTQKILTTFLNEGHFFRhlkKMR 360
Cdd:COG0079 188 LPLLARYPNLVVLRTFSKAYgLAGLRLGYAIASPELIAALRRVR------GPwnvnSLAQAAALAALEDRAYLE---ETR 258
|
250
....*....|....*.
gi 1238454442 361 ALYQTRREWMIAALRE 376
Cdd:COG0079 259 ARLRAERERLAAALRA 274
|
|
| PRK08960 |
PRK08960 |
pyridoxal phosphate-dependent aminotransferase; |
120-376 |
1.15e-11 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181595 Cd Length: 387 Bit Score: 66.23 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 120 AGQAtrSMRPEEMLNPPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQ 199
Cdd:PRK08960 53 AGQA--ALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNR 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 200 QLLKRIVPRLHTVPVdrcGIDTEYLL-------HHHRDARFAIV-TPShqSPLAVTLSLPRKQQLLDW-ASQNGAWIIED 270
Cdd:PRK08960 131 HFLRLVEGAAQLVPV---GPDSRYQLtpalverHWNADTVGALVaSPA--NPTGTLLSRDELAALSQAlRARGGHLVVDE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 271 DYDGeFHYTRKVlPSLKSLDrhDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQK-ILTTFLN 348
Cdd:PRK08960 206 IYHG-LTYGVDA-ASVLEVD--DDAFVLNSFSKYFgMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHaALACFEP 281
|
250 260
....*....|....*....|....*...
gi 1238454442 349 EGhfFRHLKKMRALYQTRREWMIAALRE 376
Cdd:PRK08960 282 ET--LAILEARRAEFARRRDFLLPALRE 307
|
|
| HTH_GNTR |
smart00345 |
helix_turn_helix gluconate operon transcriptional repressor; |
8-67 |
1.31e-11 |
|
helix_turn_helix gluconate operon transcriptional repressor;
Pssm-ID: 197669 [Multi-domain] Cd Length: 60 Bit Score: 59.51 E-value: 1.31e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 8 IYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRV 67
Cdd:smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
|
|
| GntR |
pfam00392 |
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ... |
5-67 |
4.56e-11 |
|
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.
Pssm-ID: 306822 [Multi-domain] Cd Length: 64 Bit Score: 58.01 E-value: 4.56e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1238454442 5 YHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRV 67
Cdd:pfam00392 2 YEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
3-69 |
2.25e-10 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 60.65 E-value: 2.25e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1238454442 3 PGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNP 69
Cdd:COG2188 5 PLYLQIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFVAE 71
|
|
| PRK08361 |
PRK08361 |
aspartate aminotransferase; Provisional |
136-377 |
2.59e-09 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 236248 [Multi-domain] Cd Length: 391 Bit Score: 58.74 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 136 PVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPG---YFMGQQLLKRIVPRLHTV 212
Cdd:PRK08361 68 PNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAfvcYVEDAKIAEAKPIRIPLR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 213 PVDRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDD------YDGEFHYtrkvlPSL 286
Cdd:PRK08361 148 EENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEpyehflYEGAKHY-----PMI 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 287 KSLDrhDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGHFFRHLKKMRALYQT 365
Cdd:PRK08361 223 KYAP--DNTILANSFSKTFaMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNE 300
|
250
....*....|..
gi 1238454442 366 RREWMIAALREV 377
Cdd:PRK08361 301 RRKLVLKRLKEM 312
|
|
| PRK08363 |
PRK08363 |
alanine aminotransferase; Validated |
143-314 |
4.44e-09 |
|
alanine aminotransferase; Validated
Pssm-ID: 181402 Cd Length: 398 Bit Score: 58.28 E-value: 4.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 143 LRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGY--FMGQQLLKRIVPRLH-TVPVDRCGI 219
Cdd:PRK08363 75 LREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYppYTGLVKFYGGVPVEYrTIEEEGWQP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 220 DTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDD------YDGEFhytrkvlPSLKSLDRHD 293
Cdd:PRK08363 155 DIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEiydlmtYEGKH-------VSPGSLTKDV 227
|
170 180
....*....|....*....|..
gi 1238454442 294 RVIFMGTFSKT-IMPSLRMGYI 314
Cdd:PRK08363 228 PVIVMNGLSKVyFATGWRLGYI 249
|
|
| PRK07337 |
PRK07337 |
pyridoxal phosphate-dependent aminotransferase; |
123-374 |
8.19e-09 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180937 Cd Length: 388 Bit Score: 57.38 E-value: 8.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 123 ATRSMRPEEMLNPPVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGY------- 195
Cdd:PRK07337 52 AARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYpcnrhfv 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 196 --FMGQqllKRIVPrlhTVPVDRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDD-- 271
Cdd:PRK07337 132 aaAEGR---PVLVP---SGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEiy 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 272 ----YDGEFHytrkvlpSLKSLDrhDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCAD---IVASGqpVLTQKIL 343
Cdd:PRK07337 206 qglsYDAAPV-------SALSLG--DDVITINSFSKYFnMTGWRLGWLVVPEALVGTFEKLAQnlfICASA--LAQHAAL 274
|
250 260 270
....*....|....*....|....*....|.
gi 1238454442 344 TTFlnEGHFFRHLKKMRALYQTRREWMIAAL 374
Cdd:PRK07337 275 ACF--EPDTLAIYERRRAEFKRRRDFIVPAL 303
|
|
| PRK09764 |
PRK09764 |
GntR family transcriptional regulator; |
2-71 |
6.77e-08 |
|
GntR family transcriptional regulator;
Pssm-ID: 182065 [Multi-domain] Cd Length: 240 Bit Score: 53.29 E-value: 6.77e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238454442 2 KPGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGT-----RVNPDL 71
Cdd:PRK09764 4 KPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTyvkeeRVNYDI 78
|
|
| PRK06225 |
PRK06225 |
pyridoxal phosphate-dependent aminotransferase; |
135-340 |
2.38e-07 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235749 [Multi-domain] Cd Length: 380 Bit Score: 52.83 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 135 PPVLGWYPLRQAIARYLNISRGlsctaeQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLKRIVPRLHTVPV 214
Cdd:PRK06225 63 PPPEGFPELRELILKDLGLDDD------EALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 215 --DRCGID-TEYLLHHHRDARFAI---VTPShqSPLAVTLSLPRKQQLLDWASQNGAWIIED----DYDGEFHYTRKVLP 284
Cdd:PRK06225 137 ysEECNYKlTPELVKENMDENTRLiylIDPL--NPLGSSYTEEEIKEFAEIARDNDAFLLHDctyrDFAREHTLAAEYAP 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1238454442 285 slksldrhDRVIFMGTFSKTI-MPSLRMGYIVmpaSTVEAFTDCADIVAS--GQPVLTQ 340
Cdd:PRK06225 215 --------EHTVTSYSFSKIFgMAGLRIGAVV---ATPDLIEVVKSIVINdlGTNVIAQ 262
|
|
| PRK07309 |
PRK07309 |
pyridoxal phosphate-dependent aminotransferase; |
143-395 |
7.35e-07 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235985 Cd Length: 391 Bit Score: 51.26 E-value: 7.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 143 LRQAIARYLNISRGLSCTAE-QVLITSGYSGSLRLILDTLASRSDKVVFEDPGYfmgqQLLKRIVPRLHTVPVDrcgIDT 221
Cdd:PRK07309 72 LRQAAADFVKEKYNLDYAPEnEILVTIGATEALSASLTAILEPGDKVLLPAPAY----PGYEPIVNLVGAEIVE---IDT 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 222 ------------EYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSL 289
Cdd:PRK07309 145 tendfvltpemlEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 290 DRhDRVIFMGTFSKT-IMPSLRMGYIVMPAStveaFTdcADIVASGQPVLT------QKILTTFLNEGhfFRHLKKMRAL 362
Cdd:PRK07309 225 LP-DQTILINGLSKShAMTGWRIGLIFAPAE----FT--AQLIKSHQYLVTaattmaQFAAVEALTNG--KDDALPMKKE 295
|
250 260 270
....*....|....*....|....*....|...
gi 1238454442 363 YQTRREWMIAALREVYgdlFFTEQNDGGMHIVA 395
Cdd:PRK07309 296 YIKRRDYIIEKMTDLG---FKIIKPDGAFYIFA 325
|
|
| PRK07550 |
PRK07550 |
aminotransferase; |
136-340 |
9.45e-07 |
|
aminotransferase;
Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 50.73 E-value: 9.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 136 PVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMgqqllkrivprlHTVPVD 215
Cdd:PRK07550 65 PVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFN------------HKMWLD 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 216 RCGIDTEYL--------LHHHRDARFAI---------VTPShqSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHy 278
Cdd:PRK07550 133 MLGIRPVYLpcdegpglLPDPAAAEALItprtraialVTPN--NPTGVVYPPELLHELYDLARRHGIALILDETYRDFD- 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238454442 279 TRKVLPS--LKSLDRHDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQ 340
Cdd:PRK07550 210 SGGGAPHdlFADPDWDDTLVHLYSFSKSYaLTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQ 274
|
|
| FadR |
COG2186 |
DNA-binding transcriptional regulator, FadR family [Transcription]; |
5-69 |
9.89e-07 |
|
DNA-binding transcriptional regulator, FadR family [Transcription];
Pssm-ID: 441789 [Multi-domain] Cd Length: 232 Bit Score: 49.55 E-value: 9.89e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1238454442 5 YHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNP 69
Cdd:COG2186 9 AEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFVRE 73
|
|
| PRK11402 |
PRK11402 |
transcriptional regulator PhoB; |
2-67 |
5.27e-06 |
|
transcriptional regulator PhoB;
Pssm-ID: 183118 [Multi-domain] Cd Length: 241 Bit Score: 47.52 E-value: 5.27e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1238454442 2 KPGYHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRV 67
Cdd:PRK11402 8 QLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFV 73
|
|
| tyr_nico_aTase |
TIGR01265 |
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ... |
136-316 |
5.87e-06 |
|
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Pssm-ID: 188123 Cd Length: 403 Bit Score: 48.49 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 136 PVLGWYPLRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLK--RIVPRLHTV- 212
Cdd:TIGR01265 71 PSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAfsGLEVRLYDLl 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 213 PVDRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRH 292
Cdd:TIGR01265 151 PEKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASI 230
|
170 180
....*....|....*....|....*
gi 1238454442 293 DRVIFMGTFSKT-IMPSLRMGYIVM 316
Cdd:TIGR01265 231 VPVLSLGGISKRwVVPGWRLGWIII 255
|
|
| PRK10421 |
PRK10421 |
DNA-binding transcriptional repressor LldR; Provisional |
11-69 |
7.59e-06 |
|
DNA-binding transcriptional repressor LldR; Provisional
Pssm-ID: 236690 [Multi-domain] Cd Length: 253 Bit Score: 47.07 E-value: 7.59e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1238454442 11 RYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNP 69
Cdd:PRK10421 10 RVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGTFIRW 68
|
|
| PRK07682 |
PRK07682 |
aminotransferase; |
139-377 |
1.88e-05 |
|
aminotransferase;
Pssm-ID: 181082 [Multi-domain] Cd Length: 378 Bit Score: 46.65 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 139 GWYPLRQAIARYLNISRGLS-CTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQL--LKRIVP-RLHTVPV 214
Cdd:PRK07682 58 GLLELRQEIAKYLKKRFAVSyDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLvtLAGGVPvPVATTLE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 215 DRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDD------YDGEfHYTRKVLPSLKs 288
Cdd:PRK07682 138 NEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEiyaeltYDEA-YTSFASIKGMR- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 289 ldrhDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTD-------CAdivasgqPVLTQKILTTFLNEGHffRHLKKMR 360
Cdd:PRK07682 216 ----ERTILISGFSKGFaMTGWRLGFIAAPVYFSEAMLKihqysmmCA-------PTMAQFAALEALRAGN--DDVIRMR 282
|
250
....*....|....*..
gi 1238454442 361 ALYQTRREWMIAALREV 377
Cdd:PRK07682 283 DSYRKRRNFFVTSFNEI 299
|
|
| tyr_amTase_E |
TIGR01264 |
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found ... |
136-315 |
4.50e-05 |
|
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. [Energy metabolism, Amino acids and amines]
Pssm-ID: 273529 [Multi-domain] Cd Length: 401 Bit Score: 45.54 E-value: 4.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 136 PVLGWYPLRQAIARYLNISRGlSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLKR--IVPRLHTV- 212
Cdd:TIGR01264 71 PTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESmgIEVKLYNLl 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 213 PVDRCGIDTEYLLHHHRDARFAIVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSLKSLDRH 292
Cdd:TIGR01264 150 PDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSST 229
|
170 180
....*....|....*....|....
gi 1238454442 293 DRVIFMGTFSKTIM-PSLRMGYIV 315
Cdd:TIGR01264 230 VPILSCGGLAKRWLvPGWRLGWII 253
|
|
| PRK06207 |
PRK06207 |
pyridoxal phosphate-dependent aminotransferase; |
161-379 |
4.63e-05 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235742 Cd Length: 405 Bit Score: 45.53 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 161 AEQVLITSGYSGSLRLILDTLASRSDKVVFEDPGYFMGQQLLK----RIVP-RLHTVPVD-RCGIDTEYLLHHHRDARFA 234
Cdd:PRK06207 102 ADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEffegEMVPvQLDYLSADkRAGLDLDQLEEAFKAGVRV 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 235 IVTPSHQSPLAVTLSLPRKQQLLDWASQNGAWIIEDD------YDGEFHYTRKVLPslksLDRHDRVIFMGTfSKT-IMP 307
Cdd:PRK06207 182 FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQlysrllYDGTSYTHLRALP----IDPENVITIMGP-SKTeSLS 256
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1238454442 308 SLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGHFFrhLKKMRALYQTRREWMIAALREVYG 379
Cdd:PRK06207 257 GYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGW--MKDRIARHQAIRDDLLRVLRGVEG 326
|
|
| PRK07681 |
PRK07681 |
LL-diaminopimelate aminotransferase; |
144-400 |
5.31e-05 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181081 Cd Length: 399 Bit Score: 45.18 E-value: 5.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 144 RQAIARYLNISRGLSCTAE-QVLITSGYSGSLRLILDTLASRSDKVVFEDPGY---------------FMGQQLLKRIVP 207
Cdd:PRK07681 75 HEAVTEYYNNTHNVILNADkEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYtayetgiqmagatsyYMPLKKENDFLP 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 208 RLHTVPVDRCgidteyllhhhRDARFAIVT-PSHqsPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPSL 286
Cdd:PRK07681 155 DLELIPEEIA-----------DKAKMMILNfPGN--PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISF 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 287 KSLDR-HDRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGHFFrhLKKMRALYQ 364
Cdd:PRK07681 222 LSVPGaKEVGVEINSLSKSYsLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAF--CEKNRGIYQ 299
|
250 260 270
....*....|....*....|....*....|....*.
gi 1238454442 365 TRREWMIAALREVYGDLfftEQNDGGMHIVAFLAKG 400
Cdd:PRK07681 300 ERRDTLVDGFRTFGWNV---DKPAGSMFVWAEIPKG 332
|
|
| GntR |
COG1802 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
8-69 |
5.34e-05 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441407 [Multi-domain] Cd Length: 222 Bit Score: 44.53 E-value: 5.34e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1238454442 8 IYTRYRDNITRGVLKPGDKVPaIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRVNP 69
Cdd:COG1802 16 VYEALREAILSGELPPGERLS-EAELAERLGVSRTPVREALRRLEAEGLVEIRPNRGARVAP 76
|
|
| PRK06836 |
PRK06836 |
pyridoxal phosphate-dependent aminotransferase; |
141-197 |
4.00e-04 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180720 Cd Length: 394 Bit Score: 42.49 E-value: 4.00e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1238454442 141 YP-LRQAIARYLNISRGLSCTAEQVLITSGYSGSLRLILDTLASRSDKVVFEDPgYFM 197
Cdd:PRK06836 75 YPeVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAP-YFV 131
|
|
| PRK11523 |
PRK11523 |
transcriptional regulator ExuR; |
5-67 |
1.30e-03 |
|
transcriptional regulator ExuR;
Pssm-ID: 183176 [Multi-domain] Cd Length: 253 Bit Score: 40.60 E-value: 1.30e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1238454442 5 YHDIYTRYRDNITRGVLKPGDKVPAIRVLAEELKVARKTVETAYAILIGEGYLVSQGARGTRV 67
Cdd:PRK11523 10 YQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
|
|
| PRK09148 |
PRK09148 |
LL-diaminopimelate aminotransferase; |
220-374 |
1.64e-03 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181674 [Multi-domain] Cd Length: 405 Bit Score: 40.82 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 220 DTEYLLHHHRDARFAIVTPSH------QSPLAVTLSLPRKQQLLDWASQNGAWIIEDDYDGEFHYTRKVLPS-LKSLDRH 292
Cdd:PRK09148 148 DEEFFPALERAVRHSIPKPIAlivnypSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSvLQVPGAK 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238454442 293 DRVIFMGTFSKTI-MPSLRMGYIVMPASTVEAFTDCADIVASGQPVLTQKILTTFLNEGHffRHLKKMRALYQTRREWMI 371
Cdd:PRK09148 228 DVTVEFTSMSKTFsMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQ--DCIAEMRELYKKRRDVLV 305
|
...
gi 1238454442 372 AAL 374
Cdd:PRK09148 306 ESF 308
|
|
| |
