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Conserved domains on  [gi|1242436546|gb|PBH67530|]
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hypothetical protein BGU94_00690 [Clostridioides difficile]

Protein Classification

DUF1294 domain-containing protein( domain architecture ID 10007224)

DUF1294 domain-containing protein similar to Bacillus subtilis protein YsdA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
1-69 1.40e-14

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


:

Pssm-ID: 442555  Cd Length: 90  Bit Score: 61.71  E-value: 1.40e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242436546  1 MYIDKKRAIRNEWRIKEATLMSIAVIGGSIGSIIGMYSFRHKTKHIKFTFGIPFILFLQFLLVYFYILK 69
Cdd:COG3326   22 YGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAWLLSF 90
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
1-69 1.40e-14

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 61.71  E-value: 1.40e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242436546  1 MYIDKKRAIRNEWRIKEATLMSIAVIGGSIGSIIGMYSFRHKTKHIKFTFGIPFILFLQFLLVYFYILK 69
Cdd:COG3326   22 YGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAWLLSF 90
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
 1-48 2.42e-11

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 52.74  E-value: 2.42e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1242436546  1 MYIDKKRAIRNEWRIKEATLMSIAVIGGSIGSIIGMYSFRHKTKHIKF 48
Cdd:pfam06961  8 YGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
1-69 1.40e-14

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 61.71  E-value: 1.40e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1242436546  1 MYIDKKRAIRNEWRIKEATLMSIAVIGGSIGSIIGMYSFRHKTKHIKFTFGIPFILFLQFLLVYFYILK 69
Cdd:COG3326   22 YGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNLALLAWLLSF 90
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
 1-48 2.42e-11

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 52.74  E-value: 2.42e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1242436546  1 MYIDKKRAIRNEWRIKEATLMSIAVIGGSIGSIIGMYSFRHKTKHIKF 48
Cdd:pfam06961  8 YGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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