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Conserved domains on  [gi|1251600685|gb|PDG70823|]
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flagellin [Listeria monocytogenes]

Protein Classification

PRK12805 family protein( domain architecture ID 11486202)

PRK12805 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12805 PRK12805
FliC/FljB family flagellin;
1-287 1.49e-146

FliC/FljB family flagellin;


:

Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 412.73  E-value: 1.49e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAIGAATQVSIQASDKANDLIN 160
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:PRK12805  161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
Cdd:PRK12805  241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
 
Name Accession Description Interval E-value
PRK12805 PRK12805
FliC/FljB family flagellin;
1-287 1.49e-146

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 412.73  E-value: 1.49e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAIGAATQVSIQASDKANDLIN 160
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:PRK12805  161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
Cdd:PRK12805  241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-278 4.04e-52

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 170.82  E-value: 4.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtaigaatqvsiqasdkandlin 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA----------------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 idlfnakglsagtitlGSGSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:COG1344   138 ----------------GTATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTA 201

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTP 278
Cdd:COG1344   202 ALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS 239
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.58e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 127.07  E-value: 1.58e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQT 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 3-277 5.19e-24

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 98.57  E-value: 5.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAI----------------GAATQ 146
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTdtppfsedeggevtynGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 147 VSIQASDKANDLINI---DLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQAT-----EAIDELINNISNGRALLG 218
Cdd:TIGR02550 162 RKVQVASNRSMPIGHpgdKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAAlsaslNDLDKALDNVLSARAEVG 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1251600685 219 AGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQT 277
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
 
Name Accession Description Interval E-value
PRK12805 PRK12805
FliC/FljB family flagellin;
1-287 1.49e-146

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 412.73  E-value: 1.49e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAIGAATQVSIQASDKANDLIN 160
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:PRK12805  161 IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
Cdd:PRK12805  241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLINS 287
PRK12807 PRK12807
flagellin; Provisional
 1-285 4.49e-69

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 215.84  E-value: 4.49e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLL-------DQTAIGAATQVSIQASD 153
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLagtgavtIGSTSISGAEISIETLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 154 --KANDLINIDLFNAKGLSAGTITLGSGStvagysalSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNV 231
Cdd:PRK12807  161 ssATNQQITIKLANTTAEKLGIDATTSNI--------SISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENL 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1251600685 232 NNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK12807  233 NNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 286
PRK08869 PRK08869
polar flagellin E;
3-279 3.33e-54

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 180.13  E-value: 3.33e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAIGAATQV--------------- 147
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIgansgeavsldlksm 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 148 -------------------------------------------SIQASDKANDLI----------------------NID 162
Cdd:PRK08869  164 rsdakimggvsydaeggadkdwtvgagntdlnvsfddkggetqAITINAKAGDDIeelatyingqtdgvgasvsedgKLQ 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 163 LFNAKGLSAGTIT----LGSGSTVAGYSALSVADAD-----SSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNN 233
Cdd:PRK08869  244 LFAAGQKVSGGVSfsggLAAELGLGNATAVTVDDLDistvgGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQN 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1251600685 234 QSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQ 279
Cdd:PRK08869  324 ISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQ 369
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-278 4.04e-52

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 170.82  E-value: 4.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtaigaatqvsiqasdkandlin 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA----------------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 idlfnakglsagtitlGSGSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:COG1344   138 ----------------GTATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTA 201

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTP 278
Cdd:COG1344   202 ALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLS 239
PRK12802 PRK12802
flagellin; Provisional
 1-285 2.84e-50

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 167.36  E-value: 2.84e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12802    3 LTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGAL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtaiGAATQVSIQASDKANDLIN 160
Cdd:PRK12802   83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLD----GSAGTMTFQVGANTGQSNQ 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 161 IDLFNAKGLSAGTITLGSGSTVAGysALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKA 240
Cdd:PRK12802  159 ITFGLSASFDATGLGVGSGTLITG--ADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASA 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1251600685 241 SASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK12802  237 ARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
PRK12804 PRK12804
flagellin; Provisional
 1-285 9.28e-48

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 161.32  E-value: 9.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSN-GSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAIGAAT---------QVSIQ 150
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPaagtksltfQIGAN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 151 ASDKANdlINIDLFNAKGLSAgTITLGSGSTVAGYSALSVADADSSQQATEA--------IDELINNISNGRALLGAGMS 222
Cdd:PRK12804  161 AAQQLS--VNIEAMSADALGV-KDTDGTLVTGKSVSDIDVTKFANAAAAADGgfddqlkiVDGAIKQVSDQRSKLGAVQN 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1251600685 223 RLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK12804  238 RLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLL 300
PRK12808 PRK12808
flagellin; Provisional
 1-285 2.01e-40

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 146.25  E-value: 2.01e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12808    1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtaigAATQVSIQA--SDKANDL 158
Cdd:PRK12808   81 NSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLN-----SNSSINIQTldSSDGDKQ 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 159 INIDLFNA-------KGLSAGTITLGSGSTVA----------------------------------------GYSALSVA 191
Cdd:PRK12808  156 IGIDLKSAtlealgiNDLSIGANTDIEAVSTKiaaldkntiakatveakaafdkakddtkaedsnildaaadGFKDGKAD 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 192 DA------------------------------------------------------------------------------ 193
Cdd:PRK12808  236 DAakdveaiktalsaftgaatleeaeaaktafevaqkdlvdtytkkaaltkdavadldtakttstrskaakdlvaaydka 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 194 --------------------------------------------------------------------DSSQQATEAIDE 205
Cdd:PRK12808  316 ksgakpndvakayleakmayekdnnaidgkskleaaddalekdaiktdaskvlvpkleaakkattnskADSLDAVKAIDE 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 206 LINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK12808  396 ALKTVADNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 475
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.58e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 127.07  E-value: 1.58e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQT 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK06819 PRK06819
FliC/FljB family flagellin;
3-286 1.89e-36

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 133.36  E-value: 1.89e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:PRK06819    5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQtaigaATQVSIQASDKANDLINID 162
Cdd:PRK06819   85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAE-----DTTMSIQVGANDGETIDIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 163 L------------FNAKGLS----------------------AGTITLGSGSTVAGYSALS------------------- 189
Cdd:PRK06819  160 LqkidskslglgsFSVSGVSgaltsltftdtaldtsvtgvttTTALDFSDISTFAKGATVHgigdvgtdgayadgyvirt 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 190 ---------------------VADADSSQQAT-------------------EAIDELINNISNGRALLGAGMSRLSYNVS 229
Cdd:PRK06819  240 tdgkqykgevdatngkvtfadDANGDPITDATkleaaaqfspagkatasplETLDDALKQVDGLRSSLGAVQNRFESTVT 319

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685 230 NVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLIN 286
Cdd:PRK06819  320 NLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
PRK12803 PRK12803
flagellin; Provisional
 1-285 1.02e-28

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 112.21  E-value: 1.02e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK12803    1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTA-------------------- 140
Cdd:PRK12803   81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSaaqnvrtaeelgmqpakint 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 141 ----------------IGA----ATQVSIQASDKANDLINIDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQAT 200
Cdd:PRK12803  161 paslsgsqaswtlrvhVGAnqdeAIAVNIYAANVANLFSGEGAQQAAPVQEGAQQEGAQAAPAPAAAPAQGGVNSPVNVT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 201 EAID---------ELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISML 271
Cdd:PRK12803  241 TTVDanmslakieNAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMI 320

                         330
                  ....*....|....
gi 1251600685 272 SQANQTPQMLTQLI 285
Cdd:PRK12803  321 AQANQVPQYVLSLL 334
PRK12806 PRK12806
flagellin; Provisional
 3-243 1.68e-26

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 107.85  E-value: 1.68e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqtaiGAATQVSIQASDKANDLINID 162
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILD----GSFSGASFQVGANSNQTINFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 163 LFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQATE-AIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKAS 241
Cdd:PRK12806  161 IGSIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSiNSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTS 240


                  ..
gi 1251600685 242 AS 243
Cdd:PRK12806  241 GT 242
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 3-277 5.19e-24

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 98.57  E-value: 5.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAI----------------GAATQ 146
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTdtppfsedeggevtynGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 147 VSIQASDKANDLINI---DLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQQAT-----EAIDELINNISNGRALLG 218
Cdd:TIGR02550 162 RKVQVASNRSMPIGHpgdKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAAlsaslNDLDKALDNVLSARAEVG 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1251600685 219 AGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQT 277
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQL 300
PRK08026 PRK08026
FliC/FljB family flagellin;
3-138 1.98e-22

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 96.74  E-value: 1.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1251600685  83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQ 138
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAK 140
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 200-285 5.90e-22

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 87.39  E-value: 5.90e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 200 TEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQ 279
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1251600685 280 MLTQLI 285
Cdd:pfam00700  81 SLLNLL 86
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-251 6.33e-22

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 92.75  E-value: 6.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK07701    1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADtTNYN----------NIKLLDQTA-----IGAAT 145
Cdd:PRK07701   81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIAN-TQYNgryifngtktDTPPVTDDGdnienSTDSG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 146 QVSIQASDKANDLINIDlfnakGLSAGTITLGSGSTV-----AGYSALSVADADSSQQATEAIDELINNISNGRALLGAG 220
Cdd:PRK07701  160 DIEFEIAKGNTINVNVP-----GDKAFGGQSGGGSNLfemldNLENALDSGDTQGVSNLLSDIDQHIDNVLAVRAELGAR 234

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1251600685 221 MSRLSYNVSNVNNQSIATKASASSIEDADMA 251
Cdd:PRK07701  235 SNRLELIENRLSDQEVNATKLLSDNEDVDLA 265
PRK12584 PRK12584
flagellin A; Reviewed
 2-152 3.37e-16

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 78.41  E-value: 3.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81
Cdd:PRK12584    4 QVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMD 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD------QTAIGAATQVSIQAS 152
Cdd:PRK12584   84 EQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSgqftnkEFQVGAYSNQSIKAS 160
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-129 5.12e-16

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 77.42  E-value: 5.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK06663    2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTN 129
Cdd:PRK06663   82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARG 130
PRK13588 PRK13588
flagellin B; Provisional
 2-152 1.72e-15

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 76.06  E-value: 1.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81
Cdd:PRK13588    4 RINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMD 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQT------AIGAATQVSIQAS 152
Cdd:PRK13588   84 EQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSfsnkefQIGAYSNTTVKAS 160
PRK13589 PRK13589
flagellin A;
2-152 6.83e-15

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 74.29  E-value: 6.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81
Cdd:PRK13589    4 RINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMD 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD------QTAIGAATQVSIQAS 152
Cdd:PRK13589   84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSgnftnqEFQIGASSNQTIKAT 160
PRK08411 PRK08411
flagellin; Reviewed
 2-152 9.64e-14

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 71.17  E-value: 9.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81
Cdd:PRK08411    4 RINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD------QTAIGAATQVSIQAS 152
Cdd:PRK08411   84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSgnftnqEFQIGASSNQTVKAT 160
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-276 6.25e-12

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 64.65  E-value: 6.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK07192    1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTN-------------------------YNNIKL 135
Cdd:PRK07192   81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDsegnylfsgtasntqpitfdaaggtYTYNGN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 136 LDQTAIGAATQVSIQASDKANDLIN---IDLFNAkgLSAGTITLGSGSTVAGYSALSVADADssqqATEAIDELINNISN 212
Cdd:PRK07192  161 SDQRQVQVGEGVQMPVNVTGQSVFQgggLDVFNT--LDKLIDLLETPALPAADAALTAAVDE----ALGAIDDALDNVLT 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1251600685 213 GRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQ 276
Cdd:PRK07192  235 VRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINS 298
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 16-129 1.54e-11

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 64.16  E-value: 1.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  16 LRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAV 95
Cdd:PRK08870   16 MLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVV 95

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1251600685  96 QSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTN 129
Cdd:PRK08870   96 QAGNGSLSDSDRQAIATELQGLRDQLLNLANSKD 129
flgL PRK12717
flagellar hook-associated protein 3;
18-121 7.30e-11

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 62.45  E-value: 7.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  18 KNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQS 97
Cdd:PRK12717   18 RNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSA 97

                          90       100
                  ....*....|....*....|....
gi 1251600685  98 SNGSFSDEDRKQYTAEFGSLIKEL 121
Cdd:PRK12717   98 GNGGLTDADRKAIASELKQIEAQL 121
PRK08026 PRK08026
FliC/FljB family flagellin;
191-279 4.81e-09

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 56.67  E-value: 4.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 191 ADADSSQQATE----AIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQT 266
Cdd:PRK08026  429 TLAEAAATTTEnplaALDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQA 508

                          90
                  ....*....|...
gi 1251600685 267 SISMLSQANQTPQ 279
Cdd:PRK08026  509 GNSVLAKANQVPQ 521
PRK12687 PRK12687
flagellin; Reviewed
 5-284 9.41e-08

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 52.36  E-value: 9.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   5 TNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSM- 83
Cdd:PRK12687    6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTSVv 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  84 ---SSILQRMRQLAVQSSNGSFsdeDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD-----------QTAIGAATQVSI 149
Cdd:PRK12687   86 gdsKSGLTALKAKLVAAREPGI---DRTKIQSEITAIQNDLKNTAGLAVFNGENWLSvdsspssynatKSVVSSFTRVGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 150 QASDKANDlINID---LFNAKGLSAGTI---TLGSGSTVAGYSALSV-ADADSSQQATE------AIDELINNISNGRAL 216
Cdd:PRK12687  163 TVAIKTID-VNIAklaLYDTNGSSTTGIldkTVTVGTATASVSSIDIhLLTDSATDLTKldgyigIVDQALGSVTQASAD 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1251600685 217 LGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQL 284
Cdd:PRK12687  242 LGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSL 309
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-131 2.36e-05

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 45.57  E-value: 2.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDD--AAGLAV-VTRMNVKSTGLDAASKNSSMGidlLQTAD 77
Cdd:PRK12718    1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDplAAALAVnVSQTSSMNSNYDANRKQAEQA---LGAQT 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1251600685  78 SALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYN 131
Cdd:PRK12718   78 NTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGN 131
PRK12584 PRK12584
flagellin A; Reviewed
 169-286 2.46e-05

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 45.28  E-value: 2.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 169 LSAGTITLGSGSTVAGYSALSVADADSSQQATEAIdelinnisngRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDA 248
Cdd:PRK12584  403 IASGNQSLGSGVTTLRGAMVVMDIAESAMKMLDKV----------RSDLGSVQNQMISTVNNISITQVNVKAAESQIRDV 472

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1251600685 249 DMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLIN 286
Cdd:PRK12584  473 DFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLLT 510
PRK13589 PRK13589
flagellin A;
207-285 2.96e-05

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 45.02  E-value: 2.96e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1251600685 207 INNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK13589  497 ITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLL 575
flgL PRK08073
flagellar hook-associated protein 3;
1-277 3.98e-05

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 44.20  E-value: 3.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80
Cdd:PRK08073    1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNY-------NNIKLLDQTAIGAATQVSIQASD 153
Cdd:PRK08073   81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEQgryvfggDSAEKKPFTEDGTYQGGTEDVNW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 154 KANDLINIDLF-NAKGLSAGTITlgsgSTVAGYSALSVADADSSQQATEAIDELINNISNGRALLGAGMSRLSYNVSNVN 232
Cdd:PRK08073  161 RLNDGYEVKAFrNGEALLTPVIN----TLKKMVDAMQTGDQKALQPLLEENKKNLDIIINRTTEVGGTMNTVETFKTILS 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1251600685 233 NQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQT 277
Cdd:PRK08073  237 EQNLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSKT 281
PRK13588 PRK13588
flagellin B; Provisional
 164-285 2.17e-04

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 42.55  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 164 FNAKGLSAGTITLGSGSTVAGYS-ALSVAD-ADSSQQATEAIdelinnisngRALLGAGMSRLSYNVSNVNNQSIATKAS 241
Cdd:PRK13588  400 ANANGAQAETNSQGIGAGVTSLKgAMIVMDmAESARTQLDKI----------RSDMGSVQMQLVSTINNISVTQVNVKAA 469

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1251600685 242 ASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK13588  470 ESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLL 513
PRK08411 PRK08411
flagellin; Reviewed
 53-285 4.13e-04

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 41.51  E-value: 4.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  53 NVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMrqlavqSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNn 132
Cdd:PRK08411  371 QIDANVADAMGFNSYKGGVMIQGFSSVSAFMSSEGSGF------SQGSGYSVGSGKNYSVGLSSGIQISSASAMSTVYV- 443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685 133 iklldqtaIGAATQVSIQASDKANDLINIDLFNAKGLSAGTITLGSgstvagysALSVADAdssqqateaIDELINNISN 212
Cdd:PRK08411  444 --------VSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTLKG--------AMAVMDI---------AETAITNLDQ 498

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1251600685 213 GRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
Cdd:PRK08411  499 IRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLL 571
flgL PRK08027
flagellar hook-filament junction protein FlgL;
10-131 1.86e-03

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 39.35  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251600685  10 LKTQEYLRKNNEGMTQAQ-------ERLASGKRINSSLDD--AAGLAVVTRmnvkstglDAASKNS------SMGIDLLQ 74
Cdd:PRK08027    3 LSTQMMYQQNMRGITNSQaewmkygEQMSTGKRVVNPSDDpiAASQAVVLS--------QAQAQNSqytlarTFATQKVS 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1251600685  75 TADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYN 131
Cdd:PRK08027   75 LEESVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGN 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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