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Conserved domains on  [gi|1251821308|gb|PDH58598|]
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NADH-quinone oxidoreductase subunit A [Rhodobacteraceae bacterium MED-G07]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10012780)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  1.6.5.9
Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 6.09e-53

NADH:ubiquinone oxidoreductase subunit A; Validated


:

Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 161.96  E-value: 6.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   1 MDEMLSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1251821308  81 FPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 6.09e-53

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 161.96  E-value: 6.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   1 MDEMLSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1251821308  81 FPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-120 8.71e-43

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 136.40  E-value: 8.71e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   4 MLSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPW 83
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1251821308  84 AVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEW 120
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
35-119 1.50e-42

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 134.86  E-value: 1.50e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWK 114
Cdd:pfam00507  10 KRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAWK 89


                  ....*
gi 1251821308 115 KGALE 119
Cdd:pfam00507  90 KGALE 94
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 6.09e-53

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 161.96  E-value: 6.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   1 MDEMLSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1251821308  81 FPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-120 8.71e-43

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 136.40  E-value: 8.71e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   4 MLSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPW 83
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1251821308  84 AVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEW 120
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
35-119 1.50e-42

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 134.86  E-value: 1.50e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWK 114
Cdd:pfam00507  10 KRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAWK 89


                  ....*
gi 1251821308 115 KGALE 119
Cdd:pfam00507  90 KGALE 94
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 35-121 5.58e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 114.04  E-value: 5.58e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWK 114
Cdd:MTH00055   32 KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLIILTIGLIYEWV 111


                  ....*..
gi 1251821308 115 KGALEWE 121
Cdd:MTH00055  112 KGGLEWE 118
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 35-121 5.07e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 109.00  E-value: 5.07e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWK 114
Cdd:MTH00018   27 KQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVGFLFILTLGLIYEWI 106


                  ....*..
gi 1251821308 115 KGALEWE 121
Cdd:MTH00018  107 KGGLEWE 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 36-120 2.75e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 99.30  E-value: 2.75e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  36 NPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLF--PWAVAFKDLSMAGFWSMMVfLFILTIGFAYEW 113
Cdd:MTH00069   27 NPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTPTNTLFWSTLI-LILLTLGLIYEW 105


                  ....*..
gi 1251821308 114 KKGALEW 120
Cdd:MTH00069  106 IQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 36-120 6.29e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 96.14  E-value: 6.29e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  36 NPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFL--FPWAVAFKDLSMAGFWSMMVfLFILTIGFAYEW 113
Cdd:MTH00136   29 TPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQLPSPLLTFFWATAV-LILLTLGLIYEW 107


                  ....*..
gi 1251821308 114 KKGALEW 120
Cdd:MTH00136  108 LQGGLEW 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 36-120 9.86e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 95.33  E-value: 9.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  36 NPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFP--WAVAFKDLSMAGFWSMMVFLfILTIGFAYEW 113
Cdd:MTH00113   28 KPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTPTTTLTWATIILT-LLTLGLIYEW 106


                  ....*..
gi 1251821308 114 KKGALEW 120
Cdd:MTH00113  107 LQGGLEW 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 37-121 4.25e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 94.23  E-value: 4.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  37 PDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKG 116
Cdd:MTH00030   39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKG 118


                  ....*
gi 1251821308 117 ALEWE 121
Cdd:MTH00030  119 GLEWD 123
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 35-120 3.86e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 91.58  E-value: 3.86e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFP--WAVAFKDLSMAGFWSmMVFLFILTIGFAYE 112
Cdd:MTH00042   28 RSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPlpPATLITNPSTLLPIS-LIFLIILTIGLVYE 106


                  ....*...
gi 1251821308 113 WKKGALEW 120
Cdd:MTH00042  107 WVNGGLEW 114
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
35-121 9.14e-24

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 88.57  E-value: 9.14e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  35 RNPDSEKVSAYECGFNAFDDARmKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWK 114
Cdd:PRK08489   41 KNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWK 119


                  ....*..
gi 1251821308 115 KGALEWE 121
Cdd:PRK08489  120 KGALEWQ 126
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
37-120 6.97e-23

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 85.95  E-value: 6.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  37 PDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKG 116
Cdd:PRK07756   38 PSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKK 117


                  ....
gi 1251821308 117 ALEW 120
Cdd:PRK07756  118 VLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 5-121 9.89e-23

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 85.49  E-value: 9.89e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308   5 LSEYLPILIFLAIAVALGLLLLLSAALIAVRNPDSEKVSAYECGFNAFDDAR--MKFDVRFYLVSILFIIFDLEIAFLFP 82
Cdd:PRK07928    1 MNVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYP 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1251821308  83 WAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEWE 121
Cdd:PRK07928   81 WAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ndhC CHL00022
NADH dehydrogenase subunit 3
 40-120 1.37e-21

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 82.73  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  40 EKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALE 119
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALE 118


                  .
gi 1251821308 120 W 120
Cdd:CHL00022  119 W 119
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 36-120 9.14e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 80.37  E-value: 9.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  36 NPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLF--PWAVAFKDLSMAGFWSMMvFLFILTIGFAYEW 113
Cdd:MTH00106   28 NIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTMLTMALL-LISLLALSLAYEW 106


                  ....*..
gi 1251821308 114 KKGALEW 120
Cdd:MTH00106  107 TQKGLEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 38-121 1.05e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 80.29  E-value: 1.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  38 DSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSM-MVFLFILTIGFAYEWKKG 116
Cdd:MTH00148   32 DREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSlFIFLLILILGLFHEWNEG 111


                  ....*
gi 1251821308 117 ALEWE 121
Cdd:MTH00148  112 SLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 38-120 1.29e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 79.82  E-value: 1.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  38 DSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGF-WSMMVFLFILTIGFAYEWKKG 116
Cdd:MTH00161   30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWlITSSFFILILLLGLYYEWNQG 109


                  ....
gi 1251821308 117 ALEW 120
Cdd:MTH00161  110 ALEW 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 36-120 2.78e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 79.17  E-value: 2.78e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  36 NPDSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWsMMVFLFILTIGFAYEWKK 115
Cdd:MTH00203   29 NPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLL-AFLFLILLTLGLIYEWLQ 107


                  ....*
gi 1251821308 116 GALEW 120
Cdd:MTH00203  108 GGLEW 112
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 38-120 3.62e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 68.48  E-value: 3.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  38 DSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWA-VAFKDLSMAGFWSMMVFLFILTIGFAYEWKKG 116
Cdd:MTH00202   32 DREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPlVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEG 111


                  ....
gi 1251821308 117 ALEW 120
Cdd:MTH00202  112 SLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 38-120 1.64e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 67.19  E-value: 1.64e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  38 DSEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPW-AVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKG 116
Cdd:MTH00012   32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSKTVVYTSILFLLILVIGLIHEWREG 111


                  ....
gi 1251821308 117 ALEW 120
Cdd:MTH00012  112 SLDW 115
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 61-120 1.39e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 47.11  E-value: 1.39e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  61 VRFYLVSILFIIFDLEIAFLFPWAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEW 120
Cdd:PRK06432   83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 42-120 5.33e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.50  E-value: 5.33e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1251821308  42 VSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFpwAVAFKDLSMAGFWSMMVFLFILTIGFAYEWKKGALEW 120
Cdd:MTH00060   38 VSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLL--NMPFQGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 41-120 3.22e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.48  E-value: 3.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251821308  41 KVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEIAFLFPWAVAFKdLSMAGFWSMMVFLFiltIGFAYEWKKGALEW 120
Cdd:MTH00092   34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDF-SSLISFFMLMIFIF---FGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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