|
Name |
Accession |
Description |
Interval |
E-value |
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
5-462 |
5.02e-180 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 512.51 E-value: 5.02e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 5 LFKIVFFIVIITVIALGVTYLMDNEktilGEVFVNIGTTEFILSPIQTVIFLGLIALSAILGLklfslllAILSFINGDE 84
Cdd:COG3898 1 MIRILLFLALVAALALGAAWLADRP----GTVSITWLGYEIETSLLVAAIALLVLAAAVWLLW-------RLLRFLLGSP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 85 TAISRYFSKNRERKGFGALSEGLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKTYKSLIQNPQ 164
Cdd:COG3898 70 TALSRYFRRRRRRKGYQALSRGLIAVAAGDGRLARRKAAKAERLLDRPPLTLLLEAQAAQLAGDREAARRAFEAMLEDPE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 165 TRFVGLRGILKQKLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGSIPKDIHRRRDAV 244
Cdd:COG3898 150 TRFLGLRGLMVEALRRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKAGLLDKDVARRRRAV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 245 LALAEAKDLLnEEASIEQQEAAIEANRLSPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQPHPDLKIVFYEIFAAES 324
Cdd:COG3898 230 LLTARARELE-EGDPDEARELAIEALKLAPDLVPAAVLAARLLIAQGKLRKAAKVLEKAWRAQPHPDLAAAYAELRPGDS 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 325 DEEKLKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTEDQDTRVLTLMAVTERGKGGDDETIRNLLNLAI 404
Cdd:COG3898 309 ALDRLKRAETLAALNPDHPESRLALAEAALAAGDFGEARRALGPLLEERPTARVCLLMAEIERGEHGDDGRVREWLARAL 388
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1251822011 405 TAKRGPQWICKKCNTVNTDWEPICANCSAMDSLEWKVPPIEPTNFTVSDDLLPFLAGE 462
Cdd:COG3898 389 RAPRDPAWVCDACGTVSDDWAPVSPVCGRLDAFEWKTPPERLAAPPAEAEMLPLIVGL 446
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
99-383 |
5.30e-20 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 90.74 E-value: 5.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 99 GFGALSEGLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGD-------LNKATKtyksliQNPQTRFVglR 171
Cdd:COG3071 16 LLAALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDyerrdeyLAQALE------LAPEAELA--V 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 172 GIL--KQKLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGSIPKDIHRRRDAVLALAE 249
Cdd:COG3071 88 LLTraELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 250 AKDLLNEEASIEQQEAAI-EANRLSPDLvpaAVLAARAYIQRGNARNAIRIINKAWQSQPHPDLkIVFYEIFAAESDEEK 328
Cdd:COG3071 168 LRQAARDAEALKALWKALpRAERRDPEL---AAAYARALIALGDHDEAERLLREALKRQWDPRL-VRLYGRLQGGDPAKQ 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1251822011 329 LKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTEDQDTRVLTLMA 383
Cdd:COG3071 244 LKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELA 298
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
99-394 |
8.66e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.46 E-value: 8.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 99 GFGALSEGLLALASGEGPLALAKANKAEKylKRPELTNLLI--AQAAELSGDLNKATKTYKSLIQNPQTRFVGLRGILKQ 176
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALE--LDPETVEAHLalGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 177 KLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGsiPKDIHRRRDAVLALAEAKDLlne 256
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELAELYLEQGDY--- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 257 EASIEQQEAAIEANrlsPDLVPAAVLAARAYIQRGNARNAIRIinkawqsqphpdlkivfyeifaaesdeeklkrLQKLC 336
Cdd:COG2956 161 DEAIEALEKALKLD---PDCARALLLLAELYLEQGDYEEAIAA--------------------------------LERAL 205
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1251822011 337 RLNPDHLESKISLSELYLKQENFPMAHRVLKKILTEDQDTRVLTLMAVTERGKGGDDE 394
Cdd:COG2956 206 EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEA 263
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
89-370 |
8.10e-15 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 75.79 E-value: 8.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 89 RYFSKNRERKGFGALSEGLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGD-------LNKATKtyksLIQ 161
Cdd:TIGR00540 55 AWRSRRKQRRAQQATREGLIALFEGRYSQAEKKATKAAEHSENPLLAYLLAARAAQQMGDeerrdryLAEAAE----LAP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 162 NPQTRFVGLRGilKQKLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGSI-PKDIHRR 240
Cdd:TIGR00540 131 NSELAVLLTRA--ELLLDQRDYEAALAALDSLQAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALsPEEAARL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 241 R----DAVLALAEAKDllnEEASIEQQEAAIEANRLSPDLvpaAVLAARAYIQRGNARNAIRIINKAWQSQPHPDLKIVF 316
Cdd:TIGR00540 209 EqqayIGLLDEAREED---ADALKTWWKQLPRAERQEPEL---AVAAAEALIQLGDHDEAEKLIEEALKKEWDPELLRLY 282
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1251822011 317 YEIfAAESDEEKLKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKIL 370
Cdd:TIGR00540 283 GRL-QPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLEASL 335
|
|
| HemY_N |
pfam07219 |
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of ... |
38-147 |
1.09e-14 |
|
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Pssm-ID: 429353 [Multi-domain] Cd Length: 104 Bit Score: 69.85 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 38 VNIGTTEFILSPIQTVIFLGLIALSAILGLklfslllAILSFINGDETAISRYFSKNRERKGFGALSEGLLALASGEGPL 117
Cdd:pfam07219 2 IVWGGYRIETSLWVAVLLLVLLFVLLYLLL-------RLLRLLLRLPGRVRRWRRRRRRRKARKALSEGLIALAEGDWAQ 74
|
90 100 110
....*....|....*....|....*....|
gi 1251822011 118 ALAKANKAEKYLKRPELTNLLIAQAAELSG 147
Cdd:pfam07219 75 AEKLAAKAAKLLDAPLLNYLLAARAAQLQG 104
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
106-373 |
1.08e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 106 GLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKTYKSLIQNPQTRFVGLRGILKQKLAEGQTEI 185
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 186 AIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLgakfktgsipkdihrrrdavlalaeakdllneeasieqqEA 265
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL---------------------------------------EK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 266 AIEANrlsPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVFYEIFAAESDEEK-LKRLQKLCRLNPDHL 343
Cdd:COG2956 170 ALKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQDPdYLPALPRLAELYEKLGDPEEaLELLRKALELDPSDD 246
|
250 260 270
....*....|....*....|....*....|
gi 1251822011 344 EsKISLSELYLKQENFPMAHRVLKKILTED 373
Cdd:COG2956 247 L-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
260-373 |
8.14e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 8.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 260 IEQQEAAIEANrlsPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVFYEIFAAESDEEK-LKRLQKLCR 337
Cdd:COG4235 3 IARLRQALAAN---PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEaEELLERALA 79
|
90 100 110
....*....|....*....|....*....|....*.
gi 1251822011 338 LNPDHLESKISLSELYLKQENFPMAHRVLKKILTED 373
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
239-375 |
1.66e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.19 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 239 RRRDAVLALAEAKDLLNE-EASIEQQEAAIEANrlsPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVF 316
Cdd:COG4783 2 ACAEALYALAQALLLAGDyDEAEALLEKALELD---PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPdEPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 317 YEIFAAESDEEK-LKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTEDQD 375
Cdd:COG4783 79 GLALLKAGDYDEaLALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
105-401 |
6.43e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 105 EGLLALAS-----GEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKTYKSLI-QNPQtRFVGLRGILKQKL 178
Cdd:TIGR02917 568 EPALALAQyylgkGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLaLQPD-SALALLLLADAYA 646
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 179 AEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLgakfktgsipKDIHRRR--DAVLALAEAkdllNE 256
Cdd:TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA----------KSLQKQHpkAALGFELEG----DL 712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 257 EASIEQQEAAIEANRLSPDLVP---AAVLAARAYIQRGNARNAIRIINkAWQSQPHPDLKIVFY--EIFAAESDEEK-LK 330
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPssqNAIKLHRALLASGNTAEAVKTLE-AWLKTHPNDAVLRTAlaELYLAQKDYDKaIK 791
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1251822011 331 RLQKLCRLNPDHLESKISLSELYLKQENfPMAHRVLKKILT-EDQDTRVLTLMAVTERGKGGDDETIRNLLN 401
Cdd:TIGR02917 792 HYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKlAPNIPAILDTLGWLLVEKGEADRALPLLRK 862
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
177-383 |
1.06e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.16 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 177 KLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGakfKTGSI-PKD-IHRRRDAVLALAEAKdll 254
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA---KATELdPENaAARTQLGISKLSQGD--- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 255 nEEASIEQQEAAIeanRLSPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVFYEIFAAESDEEKLKR-L 332
Cdd:TIGR02917 413 -PSEAIADLETAA---QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPdNASLHNLLGAIYLGKGDLAKAREaF 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1251822011 333 QKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTED-QDTRVLTLMA 383
Cdd:TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpKNLRAILALA 540
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
238-373 |
1.32e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 238 HRRRDAVLALAEAKDLLNEEASIEQQEAAIEANRLSPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVF 316
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1251822011 317 YEIFAAESDEEK-LKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTED 373
Cdd:COG5010 95 ALLYSRSGDKDEaKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
277-399 |
1.34e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 277 VPAAVLAARAYIQRGNARNAIRIINKAWQSQP-HPDLKIVFYEIFAAESDEEK-LKRLQKLCRLNPDHLESKISLSELYL 354
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPdNPEAFALLGEILLQLGDLDEaIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1251822011 355 KQENFPMAHRVLKKILTED-QDTRVLTLMAVTERGKGGDDETIRNL 399
Cdd:COG4783 84 KAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAAL 129
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
286-377 |
4.27e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 286 AYIQRGNARNAIRIINKAWQSQP-HPDLKIVFYEIFAAESDEEKLKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHR 364
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|...
gi 1251822011 365 VLKKILTEDQDTR 377
Cdd:COG3063 81 YLERALELDPSAL 93
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
102-354 |
6.37e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 6.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 102 ALSEGLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKTYKSLIQNPQTRFVGLRGILKQKLAEG 181
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 182 QTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGA----RKTLGAKfktgsiPKDIhrrrDAVLALAEA-KDLLNE 256
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAlaalRRALALN------PDFA----EAYLNLGEAlRRLGRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 257 EASIEQQEAAIEanrLSPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQPHpDLKIVFYEIFAAES--DEEKLKRLQK 334
Cdd:COG3914 163 EEAIAALRRALE---LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD-NADAHSNLLFALRQacDWEVYDRFEE 238
|
250 260
....*....|....*....|
gi 1251822011 335 LCRLNPDHLESKISLSELYL 354
Cdd:COG3914 239 LLAALARGPSELSPFALLYL 258
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
106-399 |
1.15e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.69 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 106 GLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKT---YKSLIQNPQTRFVGLRGIlkQKLAEGQ 182
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDElpgKTLLDDEGAAELLALRGL--AYLGLGQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 183 TEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKtLGAKFKTGSIPKdihrrRDAVLALAeakDLLNEEASIEQ 262
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA-LIDEVLTADPGN-----VDALLLKG---DLLLSLGNIEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 263 QEAAI-EANRLSPDLVpaAVLAARAYIqrgnarnAIRIiNKAWQSQPHPD--LKIVFYEIFAAESD----------EEKL 329
Cdd:TIGR02917 212 ALAAYrKAIALRPNNI--AVLLALATI-------LIEA-GEFEEAEKHADalLKKAPNSPLAHYLKalvdfqkknyEDAR 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1251822011 330 KRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTEDQDTR-VLTLMAVTERGKGGDDETIRNL 399
Cdd:TIGR02917 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHqARRLLASIQLRLGRVDEAIATL 352
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
175-308 |
2.66e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 175 KQKLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGsiPKDIHRRRDAVLALAEAKDLl 254
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--PDEPEARLNLGLALLKAGDY- 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1251822011 255 neEASIEQQEAAIEANrlsPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP 308
Cdd:COG4783 89 --DEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
106-403 |
5.06e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 106 GLLALASGEGPLALAKANKAEKYLKRPELTNLLIAQAAELSGDLNKATKTYKSLIQNPQTRFVGLRGILKQKLAEGQTEI 185
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 186 AIKIAKEAFSIKPTHSETQDILLQLQAELGDWRGARKTLGAKFKTGSipkdihrRRDAVLALAEAKDLLNEEASIEQQEA 265
Cdd:TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-------SSQNAIKLHRALLASGNTAEAVKTLE 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 266 AIEANRlsPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQP-----HPDLKIVFYEIFAAESDEEKLKRLqKLCRLNP 340
Cdd:TIGR02917 761 AWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPdnavvLNNLAWLYLELKDPRALEYAERAL-KLAPNIP 837
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1251822011 341 DHLEskiSLSELYLKQENFPMAHRVLKKILT---EDQDTRVltLMAVTERGKGGDDETIRNLLNLA 403
Cdd:TIGR02917 838 AILD---TLGWLLVEKGEADRALPLLRKAVNiapEAAAIRY--HLALALLATGRKAEARKELDKLL 898
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
137-275 |
1.02e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.40 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 137 LLIAQAAELSGDLNKATKTYKSLIQNPQTRFVGLRGILKQKLAEGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGD 216
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1251822011 217 WRGARKTLGAKFKTGsiPKDIhrrrDAVLALAEAKDLLNEEAsiEQQEAAIEANRLSPD 275
Cdd:COG4783 88 YDEALALLEKALKLD--PEHP----EAYLRLARAYRALGRPD--EAIAALEKALELDPD 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
242-399 |
4.86e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 38.83 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 242 DAVLALAEAKDLLNE-EASIEQQEAAIEanrLSPDLVPAAVLAARAYIQRGNARNAIRIINKAWQSQPhpDLKIVFYEI- 319
Cdd:COG0457 9 EAYNNLGLAYRRLGRyEEAIEDYEKALE---LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEALNNLg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 320 ---FAAESDEEKLKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTED-QDTRVLTLMAVTERGKGGDDET 395
Cdd:COG0457 84 lalQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEA 163
|
....
gi 1251822011 396 IRNL 399
Cdd:COG0457 164 LELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
139-344 |
6.36e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 38.45 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 139 IAQAAELSGDLNKATKTY-KSLIQNPQTRFV-GLRGILKQKLaeGQTEIAIKIAKEAFSIKPTHSETQDILLQLQAELGD 216
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYeKALELDPDDAEAlYNLGLAYLRL--GRYEEALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1251822011 217 WRGARKTLGAKFKTGsiPKDIhrrrDAVLALAEAKDLLNE-EASIEQQEAAIEanrLSPDLVPAAVLAARAYIQRGNARN 295
Cdd:COG0457 92 YEEALEDYDKALELD--PDDA----EALYNLGLALLELGRyDEAIEAYERALE---LDPDDADALYNLGIALEKLGRYEE 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1251822011 296 AIRIINKAWQSQPHPDLKIVFYEIFAAESDEEKLKRLQKLCRLNPDHLE 344
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
327-399 |
7.43e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 7.43e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1251822011 327 EKLKRLQKLCRLNPDHLESKISLSELYLKQENFPMAHRVLKKILTED-QDTRVLTLMAVTERGKGGDDETIRNL 399
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELL 74
|
|
| |
