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Conserved domains on  [gi|1258770614|gb|PEK90961|]
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PadR family transcriptional regulator [Bacillus mycoides]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 11447737)

PadR family transcriptional regulator similar to the phenolic acid decarboxylation repressor, which is a transcription factor that represses genes associated with the phenolic acid stress response in gram-positive bacteria

Gene Ontology:  GO:0003677|GO:0003700
PubMed:  10679470|10908318|10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
20-98 4.68e-25

DNA-binding transcriptional regulator, PadR family [Transcription];


:

Pssm-ID: 441301  Cd Length: 102  Bit Score: 90.38  E-value: 4.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1258770614  20 KQDRYGYELVRSI----SNQIEISEGSVYPLLRRLTKEEYFTTYLQESSEGPSRKYYTLTDKGRTYLYQLLEEWNEFSQG 95
Cdd:COG1695    20 EGPMYGYEIIKELeersGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEEWEKLAEA 99


                  ...
gi 1258770614  96 VNQ 98
Cdd:COG1695   100 LEA 102
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
20-98 4.68e-25

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 90.38  E-value: 4.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1258770614  20 KQDRYGYELVRSI----SNQIEISEGSVYPLLRRLTKEEYFTTYLQESSEGPSRKYYTLTDKGRTYLYQLLEEWNEFSQG 95
Cdd:COG1695    20 EGPMYGYEIIKELeersGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEEWEKLAEA 99


                  ...
gi 1258770614  96 VNQ 98
Cdd:COG1695   100 LEA 102
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 19-82 8.32e-18

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 71.12  E-value: 8.32e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1258770614  19 DKQDRYGYELVRSIS----NQIEISEGSVYPLLRRLTKEEYFTTYLQESSEGPSRKYYTLTDKGRTYL 82
Cdd:pfam03551   6 GEQPRYGYEIIKELEelsgGFWRPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRREL 73
lstR PRK09416
PadR family transcriptional regulator;
21-104 6.29e-04

PadR family transcriptional regulator;


Pssm-ID: 181836  Cd Length: 135  Bit Score: 36.69  E-value: 6.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1258770614  21 QDRYGYELVRSISNQIEIS----EGSVYPLLRRLTKEEYfttyLQESSEGPSRKYYTLTDKGRTYLYQLLEEWNEfsqgv 96
Cdd:PRK09416   54 NEKTGYELLQLLRQRGILTfegnEGSLYTLLHRLEQNRF----IQSSWDHEGAKYYQLTDKGNKMLRKAEKNATK----- 124


                  ....*...
gi 1258770614  97 NQLIKEGV 104
Cdd:PRK09416  125 ARFILKGL 132
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
20-98 4.68e-25

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 90.38  E-value: 4.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1258770614  20 KQDRYGYELVRSI----SNQIEISEGSVYPLLRRLTKEEYFTTYLQESSEGPSRKYYTLTDKGRTYLYQLLEEWNEFSQG 95
Cdd:COG1695    20 EGPMYGYEIIKELeersGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEEWEKLAEA 99


                  ...
gi 1258770614  96 VNQ 98
Cdd:COG1695   100 LEA 102
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 19-82 8.32e-18

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 71.12  E-value: 8.32e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1258770614  19 DKQDRYGYELVRSIS----NQIEISEGSVYPLLRRLTKEEYFTTYLQESSEGPSRKYYTLTDKGRTYL 82
Cdd:pfam03551   6 GEQPRYGYEIIKELEelsgGFWRPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRREL 73
lstR PRK09416
PadR family transcriptional regulator;
21-104 6.29e-04

PadR family transcriptional regulator;


Pssm-ID: 181836  Cd Length: 135  Bit Score: 36.69  E-value: 6.29e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1258770614  21 QDRYGYELVRSISNQIEIS----EGSVYPLLRRLTKEEYfttyLQESSEGPSRKYYTLTDKGRTYLYQLLEEWNEfsqgv 96
Cdd:PRK09416   54 NEKTGYELLQLLRQRGILTfegnEGSLYTLLHRLEQNRF----IQSSWDHEGAKYYQLTDKGNKMLRKAEKNATK----- 124


                  ....*...
gi 1258770614  97 NQLIKEGV 104
Cdd:PRK09416  125 ARFILKGL 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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