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Conserved domains on  [gi|1259354568|gb|PEQ12527|]
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hypothetical protein B2G71_11730 [Novosphingobium sp. PC22D]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5676 pfam18926
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 3-79 3.32e-16

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


:

Pssm-ID: 436837  Cd Length: 82  Bit Score: 66.97  E-value: 3.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1259354568  3 NTKLVAWSLGIWTTITFLVCVIYGLVTPQSLRM---SGFLEMMLPAFKW--LTWWGFLLGLVEAFLYGVYAGLVFCPIYN 77
Cdd:pfam18926  1 NTKKFGLALAITTAIVWLLCSILVALAPDALMAffnAMMHGLDLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYN 80


                 ..
gi 1259354568 78 FL 79
Cdd:pfam18926 81 AL 82
 
Name Accession Description Interval E-value
DUF5676 pfam18926
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 3-79 3.32e-16

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


Pssm-ID: 436837  Cd Length: 82  Bit Score: 66.97  E-value: 3.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1259354568  3 NTKLVAWSLGIWTTITFLVCVIYGLVTPQSLRM---SGFLEMMLPAFKW--LTWWGFLLGLVEAFLYGVYAGLVFCPIYN 77
Cdd:pfam18926  1 NTKKFGLALAITTAIVWLLCSILVALAPDALMAffnAMMHGLDLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYN 80


                 ..
gi 1259354568 78 FL 79
Cdd:pfam18926 81 AL 82
 
Name Accession Description Interval E-value
DUF5676 pfam18926
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 3-79 3.32e-16

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


Pssm-ID: 436837  Cd Length: 82  Bit Score: 66.97  E-value: 3.32e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1259354568  3 NTKLVAWSLGIWTTITFLVCVIYGLVTPQSLRM---SGFLEMMLPAFKW--LTWWGFLLGLVEAFLYGVYAGLVFCPIYN 77
Cdd:pfam18926  1 NTKKFGLALAITTAIVWLLCSILVALAPDALMAffnAMMHGLDLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYN 80


                 ..
gi 1259354568 78 FL 79
Cdd:pfam18926 81 AL 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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