|
Name |
Accession |
Description |
Interval |
E-value |
| spore_lonB |
TIGR02902 |
ATP-dependent protease LonB; Members of this protein are LonB, a paralog of the ATP-dependent ... |
6-534 |
0e+00 |
|
ATP-dependent protease LonB; Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]
Pssm-ID: 131948 [Multi-domain] Cd Length: 531 Bit Score: 875.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 6 NIFLVVQLVFGVIVGLYFWHLLRNQRTQKVSIDRESKKELEQLRKMREISLTEPLAEKVRPTTFLDIVGQEDGIKSLKAA 85
Cdd:TIGR02902 1 GIFAIVQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 86 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQ 165
Cdd:TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 166 AGIPQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPTYIHDIFQKGLPADFRLVGAT 245
Cdd:TIGR02902 161 AGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 246 TRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIGENGIEMIGMYARNGREAINLVQISAGMAINEERSFI 325
Cdd:TIGR02902 241 TRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 326 KDEDIEWVVHSSQLTPKYEKRIYPIPRIGLVNGLAVYGPNTGALLEIEVTAIPAKDK-GSVNVTGIVEEESIGSQTKSIR 404
Cdd:TIGR02902 321 LAEDIEWVAENGNYHPKPEIKLSSEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLpGSINVTGIIEEEEIGGSGKSVR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 405 RKSMAKGSVDNVLTVLRS-LDVLPEGYDIHINFPGGIPIDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPI 483
Cdd:TIGR02902 401 RKSSARGSVENVLAVLRSvFGINPQNYDIHINFPGGIPVDGPSAGVAIAVAIYSAIFKCPIDNKVAMTGEISLNGLVKPV 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1262413797 484 GGVYAKIKAAKKAGAKKVIIPAENMQPFLYTIKGIEIIPVRKLKEVFELTF 534
Cdd:TIGR02902 481 GGVPSKIEAAKKAGAKKVIIPYENWQESFGSISGINVIPVKNIDEALNYAL 531
|
|
| spore_lon_C |
TIGR02903 |
ATP-dependent protease, Lon family; Members of this protein family resemble the widely ... |
31-534 |
6.97e-162 |
|
ATP-dependent protease, Lon family; Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]
Pssm-ID: 274344 [Multi-domain] Cd Length: 615 Bit Score: 474.69 E-value: 6.97e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 31 RTQKVSIDRESKKELEQLRKMREISLTEPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARL 110
Cdd:TIGR02903 115 KEEKGPENSSTLKKLERLEKLEKKKLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 111 VLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIYQGAGA-MGQAGIPQPKKGAVTDAHGGILFIDEI 189
Cdd:TIGR02903 195 ALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRdLAETGVPEPKTGLVTDAHGGVLFIDEI 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 190 GELHPIQMNKMLKVLEDRKVFLESAYYSEENTMIPTYIHDIFQKGLPADFRLVGATTRSPEEIPPAIRSRCLEVFFRELD 269
Cdd:TIGR02903 275 GELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLT 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 270 TEEIQKVAKNAAEKVEMQIGENGIEMIGMYARNGREAINLVQISAGMA--------INEERSFIKDEDIEWVVHSSQLTP 341
Cdd:TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNILADVYGYAlyraaeagKENDKVTITQDDVYEVIQISRLSP 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 342 kYEKRIY-PIPRIGLVNGLAVYGpNTGALLEIEVTAIPAKDKGSvnvtGIVE-EESIGsqtksirrkSMAKGSVDNVLTV 419
Cdd:TIGR02903 435 -YEKRKAsPTYEVGHVFGLGVSG-FVGSVLEIEAVAFEAKEPGK----GTVRfNDTAG---------SMAKDSVFNAASV 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 420 LRSL-DVLPEGYDIHINFPGGIPIDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGVYAKIKAAKKAGA 498
Cdd:TIGR02903 500 IRKItGKDLSNYDIHVNVIGGGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKQAGI 579
|
490 500 510
....*....|....*....|....*....|....*.
gi 1262413797 499 KKVIIPAENMQPFLYTIKGIEIIPVRKLKEVFELTF 534
Cdd:TIGR02903 580 KTVVIPEENLKDVPQGLPGIEVKFVSTIEELMRIVF 615
|
|
| lon |
TIGR00763 |
endopeptidase La; This protein, the ATP-dependent serine endopeptidase La, is induced by heat ... |
97-534 |
7.10e-29 |
|
endopeptidase La; This protein, the ATP-dependent serine endopeptidase La, is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 273258 [Multi-domain] Cd Length: 775 Bit Score: 121.64 E-value: 7.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 97 YGPPGVGKTAAARLVleeAKRNPKSPFRtnatfIELDATTARFDERGIADPLIGSVHDPIYQGagaMGQAGIPQPkkgav 176
Cdd:TIGR00763 353 VGPPGVGKTSLGKSI---AKALNRKFVR-----FSLGGVRDEAEIRGHRRTYVGAMPGRIIQG---LKKAKTKNP----- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 177 tdahggILFIDEIGEL----HPIQMNKMLKVL--EDRKVFLEsaYYSEEntmiptyihdifqkglPADFRLVG--ATTRS 248
Cdd:TIGR00763 417 ------LFLLDEIDKIgssfRGDPASALLEVLdpEQNNAFSD--HYLDV----------------PFDLSKVIfiATANS 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 249 PEEIPPAIRSRcLEVF----FRELDTEEI-------QKVAKNAAEKVEMQIGENGI-EMIGMYA-----RNGREAINLVQ 311
Cdd:TIGR00763 473 IDTIPRPLLDR-MEVIelsgYTEEEKLEIakkylipKALEDHGLKPDELKITDEALlLLIKYYTreagvRNLERQIEKIC 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 312 ISAGMAINEERSFIKDEDIEWVVHSSQLT-----PKYEK-RIYPIPRIGLVNGLAvYGPNTGALLEIEVTAIPAKdkGSV 385
Cdd:TIGR00763 552 RKAAVKLVEQGEKKKSEAESVVITPDNLKkylgkPVFTYeRAYEVTPPGVVMGLA-WTPMGGDTLFIETTKVAGK--GSL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 386 NVTGI---VEEESIGSQTKSIRRKSMAKGSVDNVLtvlrsldvlpEGYDIHINFP-GGIPIDGPSAGIAMATGVYSAVHR 461
Cdd:TIGR00763 629 ELTGQlgdVMKESAQIALTYVRSIAADLGISPNFF----------EKADIHLHVPeGATPKDGPSAGITMATALLSLATG 698
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1262413797 462 TYVNNEVAMTGEISIHGEVKPIGGVYAKIKAAKKAGAKKVIIPAENMQPF----LYTIKGIEIIPVRKLKEVFELTF 534
Cdd:TIGR00763 699 KPVRPDVAMTGEITLRGKVLPIGGLKEKTIAAKRAGIKTIILPEKNRRDLeelpENVKEGLEIHFVKHYDEVLKKAF 775
|
|
| Lon |
COG0466 |
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, ... |
341-537 |
7.47e-28 |
|
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440234 [Multi-domain] Cd Length: 785 Bit Score: 118.58 E-value: 7.47e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 341 PKYEKRIYP-IPRIGLVNGLAV--YGpntGALLEIEVTAIPAKdkGSVNVTGiveeeSIGsqtksirrKSMaKGSVDNVL 417
Cdd:COG0466 585 PRFRYEKAEeEDQVGVVTGLAWteVG---GDILFIEATLMPGK--GKLTLTG-----QLG--------DVM-KESAQAAL 645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 418 TVLRS----LDVLP---EGYDIHINFP-GGIPIDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGVyak 489
Cdd:COG0466 646 SYVRSraeeLGIDPdffEKYDIHIHVPeGATPKDGPSAGITMATALVSALTGRPVRSDVAMTGEITLRGRVLPIGGLkek 725
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 490 ikaakkagakkVIIPAENMQPFL----YTIKGIEIIPVRKLKEVFELTFMQE 537
Cdd:COG0466 726 llaahragiktVILPKENEKDLEeipeEVKKGLEFHPVEHIDEVLKIALEKE 777
|
|
| Lon_C |
pfam05362 |
Lon protease (S16) C-terminal proteolytic domain; The Lon serine proteases must hydrolyse ATP ... |
351-532 |
7.87e-28 |
|
Lon protease (S16) C-terminal proteolytic domain; The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Pssm-ID: 428442 [Multi-domain] Cd Length: 205 Bit Score: 110.79 E-value: 7.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 351 PRIGLVNGLAvYGPNTGALLEIEVTAIPAKdkGSVNVTGI---VEEESIGSQTKSIRRKSMAKGSVDNVLtvlrsldvlp 427
Cdd:pfam05362 25 DQVGVVTGLA-WTEVGGDLLTIEAVIMPGK--GKLTLTGQlgdVMKESAQAALSYVRSRAEELGIDPDFF---------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 428 EGYDIHINFP-GGIPIDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGVYAKIKAAKKAGAKKVIIPAE 506
Cdd:pfam05362 92 EKKDIHIHVPeGATPKDGPSAGVTMATALVSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLLAAHRAGIKTVIIPKE 171
|
170 180 190
....*....|....*....|....*....|
gi 1262413797 507 NMQPF----LYTIKGIEIIPVRKLKEVFEL 532
Cdd:pfam05362 172 NEKDLedipENVREGLEIIPVEHVDEVLKH 201
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
59-331 |
4.22e-26 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 110.56 E-value: 4.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 59 PLAEKVRPTTFLDIVGQEDGI---KSLKAALCGPNPQHVIIYGPPGVGKTAAARLVleeAKrnpkspfRTNATFIELDAT 135
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSMILWGPPGTGKTTLARII---AG-------ATDAPFEALSAV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 136 TArfderGIADpligsVHDpIYQGAGAMGQAGIpqpkkgavtdahGGILFIDEIgelHpiQMNK-----MLKVLEDRKVF 210
Cdd:PRK13342 71 TS-----GVKD-----LRE-VIEEARQRRSAGR------------RTILFIDEI---H--RFNKaqqdaLLPHVEDGTIT 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 211 lesayyseentmiptyihdifqkglpadfrLVGATTRSPE-EIPPAIRSRCLeVF-FRELDTEEIQKVAKNA---AEKVE 285
Cdd:PRK13342 123 ------------------------------LIGATTENPSfEVNPALLSRAQ-VFeLKPLSEEDIEQLLKRAledKERGL 171
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1262413797 286 MQIGENGIEMIGMYArNG--REAINLVQISAGMAINeersfIKDEDIE 331
Cdd:PRK13342 172 VELDDEALDALARLA-NGdaRRALNLLELAALGVDS-----ITLELLE 213
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
57-331 |
1.76e-22 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 100.13 E-value: 1.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 57 TEPLAEKVRPTTFLDIVGQEDGI---KSLKAALCGPNPQHVIIYGPPGVGKTAAARLVleeAKrnpkspfRTNATFIELD 133
Cdd:COG2256 12 NAPLAERMRPRTLDEVVGQEHLLgpgKPLRRAIEAGRLSSMILWGPPGTGKTTLARLI---AN-------ATDAEFVALS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 134 ATTArfderGIADpligsvhdpIYQgagAMGQAGIPQpkkgavtdAHGG--ILFIDEIgelHpiQMNK-----MLKVLED 206
Cdd:COG2256 82 AVTS-----GVKD---------IRE---VIEEARERR--------AYGRrtILFVDEI---H--RFNKaqqdaLLPHVED 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 207 RKVflesayyseentmiptyihdifqkglpadfRLVGATTRSPE-EIPPAIRSRCLeVF-FRELDTEEIQKVAKNAAEKV 284
Cdd:COG2256 132 GTI------------------------------TLIGATTENPSfEVNSALLSRCR-VFvLKPLSEEDLEQLLERALADD 180
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1262413797 285 E-------MQIGENGIEMIGMYArNG--REAINLVQISAGMAINEERSFIKDEDIE 331
Cdd:COG2256 181 ErglggykLELDDEALEALARLA-DGdaRRALNALELAVLSAPPDGVIEITLELVE 235
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
62-314 |
1.29e-21 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 96.21 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 62 EKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNPkspfrTNATFIELDAttARFDE 141
Cdd:PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNV--ADFFD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 142 RG----IADPLIGSvhdpIYQGAGAMGQAgipqpkkgavtdahggilFIDEIgelhpiqmNKMLKvledrkvflESAYYS 217
Cdd:PRK12402 80 QGkkylVEDPRFAH----FLGTDKRIRSS------------------KIDNF--------KHVLK---------EYASYR 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 218 ----EENTMIPTYIHDI---FQKGL-------PADFRLVGATTRSPEEIPPaIRSRCLEVFFRELDTEEIQKVAKNAAEK 283
Cdd:PRK12402 121 plsaDYKTILLDNAEALredAQQALrrimeqySRTCRFIIATRQPSKLIPP-IRSRCLPLFFRAPTDDELVDVLESIAEA 199
|
250 260 270
....*....|....*....|....*....|..
gi 1262413797 284 VEMQIGENGIEMIGMYAR-NGREAINLVQISA 314
Cdd:PRK12402 200 EGVDYDDDGLELIAYYAGgDLRKAILTLQTAA 231
|
|
| PRK10787 |
PRK10787 |
DNA-binding ATP-dependent protease La; Provisional |
352-534 |
2.26e-19 |
|
DNA-binding ATP-dependent protease La; Provisional
Pssm-ID: 182730 [Multi-domain] Cd Length: 784 Bit Score: 91.92 E-value: 2.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 352 RIGLVNGLAvYGPNTGALLEIEVTAIPAKdkGSVNVTGIVEEesigsqtksirrksMAKGSVDNVLTVLRS----LDVLP 427
Cdd:PRK10787 594 RVGQVTGLA-WTEVGGDLLTIETACVPGK--GKLTYTGSLGE--------------VMQESIQAALTVVRAraekLGINP 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 428 EGY---DIHINFP-GGIPIDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGVYAKIKAAKKAGAKKVII 503
Cdd:PRK10787 657 DFYekrDIHVHVPeGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLI 736
|
170 180 190
....*....|....*....|....*....|....*
gi 1262413797 504 PAENMQPF----LYTIKGIEIIPVRKLKEVFELTF 534
Cdd:PRK10787 737 PFENKRDLeeipDNVIADLDIHPVKRIEEVLTLAL 771
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
73-265 |
1.21e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.88 E-value: 1.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 73 VGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspfrtNATFIELDAttARFDERGIADPLIGSV 152
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNA--SDLLEGLVVAELFGHF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 153 HDpiyqgagamgqagipQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESayyseentmiptyihdifq 232
Cdd:cd00009 72 LV---------------RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID------------------- 117
|
170 180 190
....*....|....*....|....*....|....
gi 1262413797 233 kglPADFRLVGATTR-SPEEIPPAIRSRCLEVFF 265
Cdd:cd00009 118 ---RENVRVIGATNRpLLGDLDRALYDRLDIRIV 148
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
58-396 |
3.75e-14 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 75.48 E-value: 3.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQeDGI----KSLKAALCGPNPQHVIIYGPPGVGKTAAARLVleeaKRNpkspfrTNATFIELD 133
Cdd:PRK13341 16 APLADRLRPRTLEEFVGQ-DHIlgegRLLRRAIKADRVGSLILYGPPGVGKTTLARII----ANH------TRAHFSSLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 134 ATTArfderGIADplIGSVHDpiyqgagamgqAGIPQPKKgavtdaHG--GILFIDEIGELHPIQMNKMLKvledrkvfl 211
Cdd:PRK13341 85 AVLA-----GVKD--LRAEVD-----------RAKERLER------HGkrTILFIDEVHRFNKAQQDALLP--------- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 212 esayYSEENTMIptyihdifqkglpadfrLVGATTRSPE-EIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIGE 290
Cdd:PRK13341 132 ----WVENGTIT-----------------LIGATTENPYfEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGD 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 291 NGIEMIGmyarngrEAIN-LVQISAGMAineeRSfikdediewvvhssqltpkyekriypiprigLVNGlavygpntgal 369
Cdd:PRK13341 191 RKVDLEP-------EAEKhLVDVANGDA----RS-------------------------------LLNA----------- 217
|
330 340
....*....|....*....|....*..
gi 1262413797 370 LEIEVTAIPAKDKGSVNVTGIVEEESI 396
Cdd:PRK13341 218 LELAVESTPPDEDGLIDITLAIAEESI 244
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
72-267 |
4.08e-14 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 70.12 E-value: 4.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 72 IVGQEDGIKSLK--AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspfrtNATFIELDATtarfderGIADPLI 149
Cdd:pfam00158 1 IIGESPAMQEVLeqAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRA-------DGPFVAVNCA-------AIPEELL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 150 GSV---HDPiyqGA--GAMGQagipqpKKGAVTDAHGGILFIDEIGELhPIQMN-KMLKVLEDRKVF-LESayyseentm 222
Cdd:pfam00158 67 ESElfgHEK---GAftGADSD------RKGLFELADGGTLFLDEIGEL-PLELQaKLLRVLQEGEFErVGG--------- 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1262413797 223 iptyihdifQKGLPADFRLVGATTRSPEEippairsRCLEVFFRE 267
Cdd:pfam00158 128 ---------TKPIKVDVRIIAATNRDLEE-------AVAEGRFRE 156
|
|
| COG1750 |
COG1750 |
Predicted archaeal serine protease, S18 family [General function prediction only]; |
359-487 |
4.80e-14 |
|
Predicted archaeal serine protease, S18 family [General function prediction only];
Pssm-ID: 441356 [Multi-domain] Cd Length: 213 Bit Score: 71.16 E-value: 4.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 359 LAVYGPNTGALLEIEVT-AIPAKDKGSVNVTGIVEEESIGSqtksirrksmAKGSVdnvLTVLRSLDVLPEGYDIHINFP 437
Cdd:COG1750 35 PAVSGTGEGVVINITVTvTYPGSGRVYVSTSPLTGPDTQAS----------ARIAA---LVASLLAGVDLSSYDVYISIE 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1262413797 438 GGIP-IDGPSAGIAMATGVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGVY 487
Cdd:COG1750 102 SDSPiVGGPSAGGAMTVATYAALLGLPLNKSVTMTGMINPDGSIGPVGGVY 152
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
58-321 |
5.45e-14 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 72.98 E-value: 5.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKTAAArLVLeeAKRNPKSPFRTNatFIELDATta 137
Cdd:PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAA-LAL--ARELYGEDWREN--FLELNAS-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 138 rfDERGiadplIGSVHDPIyqgagamgqagipqpKKGAVTDAHGG----ILFIDEIGELHPIQMNKMLKVLEdrkvfles 213
Cdd:PRK00440 78 --DERG-----IDVIRNKI---------------KEFARTAPVGGapfkIIFLDEADNLTSDAQQALRRTME-------- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 214 aYYSeENTmiptyihdifqkglpadfRLVGATTRSPEEIPPaIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIGENGI 293
Cdd:PRK00440 128 -MYS-QNT------------------RFILSCNYSSKIIDP-IQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDAL 186
|
250 260 270
....*....|....*....|....*....|..
gi 1262413797 294 EMIgMYARNG--REAINLVQISA--GMAINEE 321
Cdd:PRK00440 187 EAI-YYVSEGdmRKAINALQAAAatGKEVTEE 217
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
82-311 |
2.65e-12 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 67.69 E-value: 2.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 82 LKAALCGPNPQHVIIYGPPGVGKTAAA----RLVLEEAKRNPKSPFRTNAT---------FIELDATTARfDERGIadpl 148
Cdd:COG0470 9 LAAAESGRLPHALLLHGPPGIGKTTLAlalaRDLLCENPEGGKACGQCHSRlmaagnhpdLLELNPEEKS-DQIGI---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 149 igsvhDPIYQGAGAMGQAGIPQPKKgavtdahggILFIDEIGELHPIQMNKMLKVLEDrkvflesayySEENTMIptyih 228
Cdd:COG0470 84 -----DQIRELGEFLSLTPLEGGRK---------VVIIDEADAMNEAAANALLKTLEE----------PPKNTPF----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 229 dIFqkglpadfrlvgaTTRSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKnaaekvEMQIGENGIEMIgmYARNG---RE 305
Cdd:COG0470 135 -IL-------------IANDPSRLLPTIRSRCQVIRFRPPSEEEALAWLR------EEGVDEDALEAI--LRLAGgdpRA 192
|
....*.
gi 1262413797 306 AINLVQ 311
Cdd:COG0470 193 AINLLQ 198
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
68-310 |
1.41e-11 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 65.40 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 68 TFLDIVGQEDGIKSLKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspfrtnatfieLDATTArfder 142
Cdd:TIGR00635 2 LLAEFIGQEKVKEQLQLFIEaakmrQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-------------LKITSG----- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 143 giadpligsvhdPIYQGAGAMGqagipqpkkGAVTD-AHGGILFIDEIGELHPIQMNKMLKVLEDRKVflesayyseent 221
Cdd:TIGR00635 64 ------------PALEKPGDLA---------AILTNlEEGDVLFIDEIHRLSPAVEELLYPAMEDFRL------------ 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 222 miptyihDI-FQKGLPAD--------FRLVGATTRSPEEIPPaIRSRCLEVFFRELDT-EEIQKVAKNAAEKVEMQIGEN 291
Cdd:TIGR00635 111 -------DIvIGKGPSARsvrldlppFTLVGATTRAGMLTSP-LRDRFGIILRLEFYTvEELAEIVSRSAGLLNVEIEPE 182
|
250 260
....*....|....*....|
gi 1262413797 292 GIEMIGMYARNG-REAINLV 310
Cdd:TIGR00635 183 AALEIARRSRGTpRIANRLL 202
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
66-326 |
1.87e-11 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 65.60 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 66 PTTFLDIVGQEDGIKSLKAALcgpNPQHV----IIYGPPGVGKTAAARLVleeAK----RNPKSPF-------------R 124
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNAL---ASGRLahayLFTGPRGVGKTTLARIL---AKalncENGPTGEpcgecescraiaaG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 125 TNATFIELDATTARfdeRGIAD--PLIGSVHDPIYQGagamgqagipqPKKgavtdahggILFIDEIGELHPIQMNKMLK 202
Cdd:COG2812 80 SHPDVIEIDAEASN---IGVDDirELIEKVSYAPVEG-----------RYK---------VYIIDEAHMLTTEAFNALLK 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 203 VLEdrkvflesayysE--ENTMIptyihdIFqkglpadfrlvgATTrSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNA 280
Cdd:COG2812 137 TLE------------EppPHVVF------IL------------ATT-EPQKLLPTILSRCQRFDFRRLPPEEIAEHLAKI 185
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1262413797 281 AEKVEMQIGENGIEMIGMYArNG--REAINLV-QISAGMAINEERSFIK 326
Cdd:COG2812 186 AEREGIEIEPEALALIARAA-DGsmRDALSLLdQAIAFGLLDRRELLLD 233
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
58-309 |
7.21e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 64.46 E-value: 7.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAK----RNPKSPFRTNA----- 127
Cdd:PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFaGPRGTGKTTIARIL---AKvlncLNPQEGEPCGKcencv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 128 -----TF---IELDATTarfdERGIADplIGSVHDPI-YqgagamgqagipQPKKGAVTdahggILFIDEIGELHPIQMN 198
Cdd:PRK14953 81 eidkgSFpdlIEIDAAS----NRGIDD--IRALRDAVsY------------TPIKGKYK-----VYIIDEAHMLTKEAFN 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 199 KMLKVLED---RKVFlesayyseentmiptyihdifqkglpadfrlVGATTRSpEEIPPAIRSRCLEVFFRELDTEEIQK 275
Cdd:PRK14953 138 ALLKTLEEpppRTIF-------------------------------ILCTTEY-DKIPPTILSRCQRFIFSKPTKEQIKE 185
|
250 260 270
....*....|....*....|....*....|....*
gi 1262413797 276 VAKNAAEKVEMQIGENGIEMIGMYARNG-REAINL 309
Cdd:PRK14953 186 YLKRICNEEKIEYEEKALDLLAQASEGGmRDAASL 220
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
61-251 |
7.29e-11 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 64.92 E-value: 7.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 61 AEKVRPTTFLDIVGQEDGIKSL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEakrnpkSPfRTNATFIELDAttar 138
Cdd:COG3284 312 AGAPAPAALAALAGGDPAMRRAlrRARRLADRDIPVLILGETGTGKELFARAIHAA------SP-RADGPFVAVNC---- 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 139 fdeRGIADPLIGSV---HDPiyqGA--GAmgqagIPQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVF-LE 212
Cdd:COG3284 381 ---AAIPEELIESElfgYEP---GAftGA-----RRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTpLG 449
|
170 180 190
....*....|....*....|....*....|....*....
gi 1262413797 213 SAyyseentmiptyihdifqKGLPADFRLVGATTRSPEE 251
Cdd:COG3284 450 GT------------------KPIPVDVRLIAATHRDLRE 470
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
94-268 |
1.73e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 58.76 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 94 VIIYGPPGVGKTAAARLVLEEAkrnpkspfrtNATFIELDATTARFDERGIADPLIgsvhdpiyqgAGAMGQAGIPQPKk 173
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELVSKYVGESEKRL----------RELFEAAKKLAPC- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 174 gavtdahggILFIDEIGELHPIQ-----------MNKMLKVLEDrkvflesayyseentmiptyihdifQKGLPADFRLV 242
Cdd:pfam00004 60 ---------VIFIDEIDALAGSRgsggdsesrrvVNQLLTELDG-------------------------FTSSNSKVIVI 105
|
170 180
....*....|....*....|....*.
gi 1262413797 243 GATTRsPEEIPPAIRSRCLEVFFREL 268
Cdd:pfam00004 106 AATNR-PDKLDPALLGRFDRIIEFPL 130
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
62-331 |
5.15e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 62.17 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 62 EKVRPTTFLDIVGQEDGIKSL-KAALCGPNPQHVIIYGPPGVGKTAAARLVleeAKR----NPK-----------SPFRT 125
Cdd:PRK05896 8 RKYRPHNFKQIIGQELIKKILvNAILNNKLTHAYIFSGPRGIGKTSIAKIF---AKAinclNPKdgdccnscsvcESINT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 NAT--FIELDATTarfdERGIADplIGSVHDPIYQgagamgqagIPQPKKGAVtdahggiLFIDEIGELHPIQMNKMLKV 203
Cdd:PRK05896 85 NQSvdIVELDAAS----NNGVDE--IRNIIDNINY---------LPTTFKYKV-------YIIDEAHMLSTSAWNALLKT 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 204 LEDRkvflesayyseentmiPTYIHDIFqkglpadfrlvgATTRSpEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEK 283
Cdd:PRK05896 143 LEEP----------------PKHVVFIF------------ATTEF-QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK 193
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1262413797 284 VEMQIGENGIEMIGMYAR-NGREAINLV-QISagmaiNEERSFIKDEDIE 331
Cdd:PRK05896 194 EKIKIEDNAIDKIADLADgSLRDGLSILdQLS-----TFKNSEIDIEDIN 238
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
58-321 |
7.70e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 61.32 E-value: 7.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLV---LEEAKRNPKSPFRT-------- 125
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFaGPRGTGKTTVARILaksLNCENRKGVEPCNEcracrsid 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 NATF---IELDATTarfdERGIadpligsvhDPIYQGAGAMGQagipQPKKGAVTdahggILFIDEIGELHPIQMNKMLK 202
Cdd:PRK14962 82 EGTFmdvIELDAAS----NRGI---------DEIRKIRDAVGY----RPMEGKYK-----VYIIDEVHMLTKEAFNALLK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 203 VLEDRkvflesayyseentmiptyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAE 282
Cdd:PRK14962 140 TLEEP----------------------------PSHVVFVLATT-NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1262413797 283 KVEMQIGENGIEMIGMYARNG-REAIN-LVQI--SAGMAINEE 321
Cdd:PRK14962 191 AEGIEIDREALSFIAKRASGGlRDALTmLEQVwkFSEGKITLE 233
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
65-310 |
9.63e-10 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 60.14 E-value: 9.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 65 RPTTFLDIVGQEDGIKSLKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspFRTnatfieldaTTArf 139
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEaakkrGEALDHVLLYGPPGLGKTTLANIIANEMGVN----IRI---------TSG-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 140 dergiadPLIgsvhdpiyQGAGAMgqAGIpqpkkgaVTD-AHGGILFIDEIGELHPIQMNKMLKVLEDRKVflesayyse 218
Cdd:PRK00080 85 -------PAL--------EKPGDL--AAI-------LTNlEEGDVLFIDEIHRLSPVVEEILYPAMEDFRL--------- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 219 entmiptyihDI-FQKG---------LPAdFRLVGATTRSpEEIPPAIRSRclevF-----FRELDTEEIQKVAKNAAEK 283
Cdd:PRK00080 132 ----------DImIGKGpaarsirldLPP-FTLIGATTRA-GLLTSPLRDR----FgivqrLEFYTVEELEKIVKRSARI 195
|
250 260
....*....|....*....|....*...
gi 1262413797 284 VEMQIGENGIEMIGMYARNG-REAINLV 310
Cdd:PRK00080 196 LGVEIDEEGALEIARRSRGTpRIANRLL 223
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
27-340 |
9.93e-10 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 60.70 E-value: 9.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 27 LRNQRTQKVSIDRESKKELEQLRKMREISLTEPLAEKVRPTTFLDIVGQEDGIKSLKAALCGP-------------NPQH 93
Cdd:COG0464 114 LERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAILDDLGGLEEVKEELRELVALPlkrpelreeyglpPPRG 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 94 VIIYGPPGVGKTAAARLVLEEAKRNpkspfrtnatFIELDATTarfdergIADPLIGS----VHDPIYQgagAMGQAgip 169
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELGLP----------LIEVDLSD-------LVSKYVGEteknLREVFDK---ARGLA--- 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 170 qpkkgavtdahGGILFIDEIGELHP-----------IQMNKMLKVLEDRKvflesayyseentmiptyiHDIFqkglpad 238
Cdd:COG0464 251 -----------PCVLFIDEADALAGkrgevgdgvgrRVVNTLLTEMEELR-------------------SDVV------- 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 239 frLVGATTRsPEEIPPAIRSRC-LEVFFRELDTEEIQKVAKNAAEKVEMQIGENgIEMIGMYAR--NGREAINLVQISAG 315
Cdd:COG0464 294 --VIAATNR-PDLLDPALLRRFdEIIFFPLPDAEERLEIFRIHLRKRPLDEDVD-LEELAEATEglSGADIRNVVRRAAL 369
|
330 340
....*....|....*....|....*
gi 1262413797 316 MAINEERSFIKDEDIEWVVHSSQLT 340
Cdd:COG0464 370 QALRLGREPVTTEDLLEALEREDIF 394
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
71-251 |
1.34e-09 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 60.36 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 71 DIVGQEDGIKSL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEeakrnpKSPfRTNATFIELDATtarfderGIADPL 148
Cdd:COG2204 132 GLIGRSPAMQEVrrLIEKVAPSDATVLITGESGTGKELVARAIHR------LSP-RADGPFVAVNCA-------AIPEEL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 149 IGSVHDPIYQGA--GAMGQagipqpKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESAyyseentmipty 226
Cdd:COG2204 198 LESELFGHEKGAftGAVAR------RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGG------------ 259
|
170 180
....*....|....*....|....*
gi 1262413797 227 ihdifQKGLPADFRLVGATTRSPEE 251
Cdd:COG2204 260 -----NKPIPVDVRVIAATNRDLEE 279
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
91-259 |
2.00e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.23 E-value: 2.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 91 PQHVIIYGPPGVGKTAAARLVLEEAKrnpkspfRTNATFIELDATTARfdERGIADPLIGSVHDPIYQGAGAMGQagipq 170
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELG-------PPGGGVIYIDGEDIL--EEVLDQLLLIIVGGKKASGSGELRL----- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 171 pkKGAVTDAHG---GILFIDEIGELHPIQMNKMLKVLEDRKVflesayyseentmiptyihdIFQKGLPADFRLVGATTR 247
Cdd:smart00382 68 --RLALALARKlkpDVLILDEITSLLDAEQEALLLLLEELRL--------------------LLLLKSEKNLTVILTTND 125
|
170
....*....|..
gi 1262413797 248 SPEEIPPAIRSR 259
Cdd:smart00382 126 EKDLGPALLRRR 137
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
69-249 |
4.33e-09 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 56.77 E-value: 4.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 69 FLDIVGQEDGIKSLKAALCGPNpqHVIIYGPPGVGKTA-AARL--VLeeakrnpksPFRTNATFIE---------LDATT 136
Cdd:pfam01078 2 LADVKGQEQAKRALEIAAAGGH--NLLMIGPPGSGKTMlAKRLpgIL---------PPLTEAEALEvtaihsvagLGGDG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 137 ARFDERGIADP--------LIGsvhdpiyqgagamgqaGIPQPKKGAVTDAHGGILFIDEIGELHPiqmnKMLKVL---- 204
Cdd:pfam01078 71 GLIRRRPFRAPhhsasaaaLVG----------------GGSIPRPGEISLAHNGVLFLDELPEFKR----RVLESLrqpl 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1262413797 205 EDRKVFLESAYYSEentmipTYihdifqkglPADFRLVGATTRSP 249
Cdd:pfam01078 131 EDGEITISRARAKV------TF---------PARFQLVAAMNPCP 160
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
429-534 |
1.31e-08 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 57.37 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 429 GYDIHINFPGGIPIDGPSA--GIAMAtgVYSAVHRTYVNNEVAMTGEISIHGEVKPIGGV-----------Yakikaakk 495
Cdd:COG1066 350 DQDVYVNVVGGLKITEPAAdlAVALA--IASSFRDRPLPPDTVFFGEVGLTGEIRPVSRIeqrlkeaaklgF-------- 419
|
90 100 110
....*....|....*....|....*....|....*....
gi 1262413797 496 agaKKVIIPAENMQPFlyTIKGIEIIPVRKLKEVFELTF 534
Cdd:COG1066 420 ---KRAIVPKGNKKKL--KPKGIEIIGVSTLEEALEALF 453
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
33-249 |
2.18e-08 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 56.91 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 33 QKVSIDRESKKELEQLRKMREISLTEPlaekvrpTTFLDIVGQEDGIKSLKAALCGPNpqHVIIYGPPGVGKTA-AARLV 111
Cdd:PRK09862 161 QAVCAFLEGKHALERPKPTDAVSRALQ-------HDLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMlASRIN 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 112 LEEAKRNPKSPFRTNATF--IELDATTARFDERGIADPligsvHDPIYQGAgAMGQAGIPQPkkGAVTDAHGGILFIDEI 189
Cdd:PRK09862 232 GLLPDLSNEEALESAAILslVNAESVQKQWRQRPFRSP-----HHSASLTA-MVGGGAIPGP--GEISLAHNGVLFLDEL 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 190 GELHPIQMNKMLKVLEDRKVFLesayySEENTMIpTYihdifqkglPADFRLVGATTRSP 249
Cdd:PRK09862 304 PEFERRTLDALREPIESGQIHL-----SRTRAKI-TY---------PARFQLVAAMNPSP 348
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
60-273 |
5.15e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 55.87 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHV-IIYGPPGVGKTAAARLVleeakrnPKSPFRTNATFIE------- 131
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAyLLTGTRGVGKTTIARIL-------AKSLNCENAQHGEpcgvcqs 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 132 ---LDAttARFDERGIADPLIGSVHDPIYQgagamgqagIPQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDrk 208
Cdd:PRK08691 79 ctqIDA--GRYVDLLEIDAASNTGIDNIRE---------VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-- 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1262413797 209 vflesayyseentmiPtyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEI 273
Cdd:PRK08691 146 ---------------P-----------PEHVKFILATT-DPHKVPVTVLSRCLQFVLRNMTAQQV 183
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
61-288 |
5.25e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 55.55 E-value: 5.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 61 AEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARL---VLEEAKR----------NPKSPFR-T 125
Cdd:PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFsGPRGVGKTSSARAfarCLNCVNGptpmpcgecsSCKSIDNdN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 NATFIELD--ATTARFDERGIADPLIGSVHDPIYQgagamgqagipqpkkgavtdahggILFIDEIGELHPIQMNKMLKV 203
Cdd:PRK06647 87 SLDVIEIDgaSNTSVQDVRQIKEEIMFPPASSRYR------------------------VYIIDEVHMLSNSAFNALLKT 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 204 LEDRkvflesayyseentmiPTYIHDIFqkglpadfrlvgATTRSpEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAek 283
Cdd:PRK06647 143 IEEP----------------PPYIVFIF------------ATTEV-HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC-- 191
|
....*
gi 1262413797 284 VEMQI 288
Cdd:PRK06647 192 LEDQI 196
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
60-282 |
5.53e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 55.62 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAAL-CGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKSP-----------FRTNA 127
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALrQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPkpcgecesclaVRRGA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 128 --TFIELDATTArfdergiadpliGSVHDpIYQGAGAMGQAGIPQPKKgavtdahggILFIDEIGELHPIQMNKMLKVLE 205
Cdd:PRK14963 84 hpDVLEIDAASN------------NSVED-VRDLREKVLLAPLRGGRK---------VYILDEAHMMSKSAFNALLKTLE 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1262413797 206 DRkvflesayyseentmiPTyiHDIFqkglpadfrlVGATTRsPEEIPPAIRSRCLEVFFRELDTEEI-QKVAKNAAE 282
Cdd:PRK14963 142 EP----------------PE--HVIF----------ILATTE-PEKMPPTILSRTQHFRFRRLTEEEIaGKLRRLLEA 190
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
93-260 |
8.51e-08 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 51.14 E-value: 8.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 93 HVIIYGPPGVGKTaaaRLVLEEAKRNPKSPFRTnatfIELDATTARFDERGI--ADPLIGSVHDpiyqgagamgqagipq 170
Cdd:pfam07728 1 GVLLVGPPGTGKT---ELAERLAAALSNRPVFY----VQLTRDTTEEDLFGRrnIDPGGASWVD---------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 171 pkkGAVTDA--HGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESayYSEEntmiptyihdifQKGLPADFRLVGATT-- 246
Cdd:pfam07728 58 ---GPLVRAarEGEIAVLDEINRANPDVLNSLLSLLDERRLLLPD--GGEL------------VKAAPDGFRLIATMNpl 120
|
170
....*....|....*
gi 1262413797 247 -RSPEEIPPAIRSRC 260
Cdd:pfam07728 121 dRGLNELSPALRSRF 135
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
43-251 |
8.95e-08 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 54.78 E-value: 8.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 43 KELEQLrkMREISLTEPLAEKVRPTTFLDIVGQEDGIKSLK--AALCGPNPQHVIIYGPPGVGKTAAARLVLEEakrnpk 120
Cdd:COG3829 113 TELKRL--ERKLREEELERGLSAKYTFDDIIGKSPAMKELLelAKRVAKSDSTVLILGESGTGKELFARAIHNA------ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 121 SPfRTNATFIELDATtarfderGIADPLI-----GSVhdpiyQGA--GAmgqagIPQPKKGAVTDAHGGILFIDEIGELh 193
Cdd:COG3829 185 SP-RRDGPFVAVNCA-------AIPENLLeselfGYE-----KGAftGA-----KKGGKPGLFELADGGTLFLDEIGEM- 245
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 194 PIQM-NKMLKVLEDRKVflesayysE---ENTMIptyihdifqkglPADFRLVGATTRSPEE 251
Cdd:COG3829 246 PLSLqAKLLRVLQEKEV--------RrvgGTKPI------------PVDVRIIAATNRDLEE 287
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
38-266 |
1.92e-07 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 53.50 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 38 DRESKKELEQLRKMREISLTEPLAEKVRpttfLDIVGQEDGIKSL--KAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 115
Cdd:PRK10365 111 DNLQATLEKALAHTHSIDAETPAVTASQ----FGMVGKSPAMQHLlsEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 116 KRNPKSPFRTNAtfieldattARFDERGIADPLIGsvHDpiyqgAGAMgqAGIPQPKKGAVTDAHGGILFIDEIGELHPI 195
Cdd:PRK10365 187 ARSEKPLVTLNC---------AALNESLLESELFG--HE-----KGAF--TGADKRREGRFVEADGGTLFLDEIGDISPM 248
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1262413797 196 QMNKMLKVLEDRKVFLESAyyseentmiptyihdifQKGLPADFRLVGATTRSPEEIPPAIRSRcLEVFFR 266
Cdd:PRK10365 249 MQVRLLRAIQEREVQRVGS-----------------NQTISVDVRLIAATHRDLAAEVNAGRFR-QDLYYR 301
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
59-108 |
2.05e-07 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 53.39 E-value: 2.05e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1262413797 59 PLAEKVRPTTFLDIVGQEDGIKSLK----AALCGPNPQHVIIYGPPGVGKTAAA 108
Cdd:PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLRewieSWLKGKPKKALLLYGPPGVGKTSLA 56
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
72-405 |
2.06e-07 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 53.02 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 72 IVGQEDGIKSLKAALC----GPNPQHVIIYGPPGVGKTAAARLV---LEEAKRNPKSPFRTnaTFIELDATTARFDE-RG 143
Cdd:TIGR02928 17 IVHRDEQIEELAKALRpilrGSRPSNVFIYGKTGTGKTAVTKYVmkeLEEAAEDRDVRVVT--VYVNCQILDTLYQVlVE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 144 IADPLIGSVHDPIYQgagamgqaGIPQPKK-GAVTD---AHGGILFI--DEIgelhpiqmNKMLKVLEDRKVFLESAYys 217
Cdd:TIGR02928 95 LANQLRGSGEEVPTT--------GLSTSEVfRRLYKelnERGDSLIIvlDEI--------DYLVGDDDDLLYQLSRAR-- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 218 EENTMIPTYIHDIfqkGLPADFRLVgattrspEEIPPAIRSRCL--EVFFRELDTEEIQKVAKNAAEKV--EMQIGENGI 293
Cdd:TIGR02928 157 SNGDLDNAKVGVI---GISNDLKFR-------ENLDPRVKSSLCeeEIIFPPYDAEELRDILENRAEKAfyDGVLDDGVI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 294 EMIGMYAR----NGREAINLVQISAGMAINEERSFIKDEDIEwvvhssQLTPKYEK-RIYPiprigLVNGLavygPNTGA 368
Cdd:TIGR02928 227 PLCAALAAqehgDARKAIDLLRVAGEIAEREGAERVTEDHVE------KAQEKIEKdRLLE-----LIRGL----PTHSK 291
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1262413797 369 LLEIEVTAIPAKDKGSVnVTGIVEE------ESIGSQTKSIRR 405
Cdd:TIGR02928 292 LVLLAIANLAANDEDPF-RTGEVYEvykevcEDIGVDPLTQRR 333
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
71-117 |
3.52e-07 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 52.54 E-value: 3.52e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1262413797 71 DIVGQEDGIKSLKAALC----GPNPQHVIIYGPPGVGKTAAARLVLEEAKR 117
Cdd:COG1474 27 RLPHREEEIEELASALRpalrGERPSNVLIYGPTGTGKTAVAKYVLEELEE 77
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
60-314 |
4.28e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 52.48 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAAL-CGPNPQHVIIYGPPGVGKTAAARLV---LEEAKRNPKSPFRT---------- 125
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFtLNKIPQSILLVGASGVGKTTCARIIslcLNCSNGPTSDPCGTchncisikns 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 -NATFIELDAT--TARFDERGIadpLIGSVHDPIyqgagamgqagipqpkkgavtDAHGGILFIDEIGELHPIQMNKMLK 202
Cdd:PRK14964 83 nHPDVIEIDAAsnTSVDDIKVI---LENSCYLPI---------------------SSKFKVYIIDEVHMLSNSAFNALLK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 203 VLEDrkvflesayyseentmiptyihdifqkglPADF-RLVGATTRSpEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAA 281
Cdd:PRK14964 139 TLEE-----------------------------PAPHvKFILATTEV-KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188
|
250 260 270
....*....|....*....|....*....|....
gi 1262413797 282 EKVEMQIGENGIEMIGMYARNG-REAINLVQISA 314
Cdd:PRK14964 189 KKENIEHDEESLKLIAENSSGSmRNALFLLEQAA 222
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
58-293 |
4.79e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 52.26 E-value: 4.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHV-IIYGPPGVGKTAAARLVleeAKR----NPKSPFRTNATFIEL 132
Cdd:PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAyIFFGPRGVGKTTIARIL---AKRlnceNPIGNEPCNECTSCL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 133 DATtarfdeRGIADPLIGsvhdpiYQGAGAMGQAGIPQPKKGAVTDAHGG---ILFIDEIGELHPIQMNKMLKVLEDrkv 209
Cdd:PRK14956 83 EIT------KGISSDVLE------IDAASNRGIENIRELRDNVKFAPMGGkykVYIIDEVHMLTDQSFNALLKTLEE--- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 210 flesayyseentmiPtyihdifqkglPADFRLVGATTRSpEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIG 289
Cdd:PRK14956 148 --------------P-----------PAHIVFILATTEF-HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD 201
|
....
gi 1262413797 290 ENGI 293
Cdd:PRK14956 202 QEGL 205
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
60-311 |
5.05e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 52.12 E-value: 5.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHV-IIYGPPGVGKTAAARLVleeAKR-NPKSPFRTNAT--------- 128
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKTTIARLL---AKSlNCQNGITSNPCrkciickei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 129 -------FIELDAT--TARFDERGIADPLIGSvhdpiyqgagamgqagipqPKKGAVTdahggILFIDEIGELHPIQMNK 199
Cdd:PRK14961 83 ekglcldLIEIDAAsrTKVEEMREILDNIYYS-------------------PSKSRFK-----VYLIDEVHMLSRHSFNA 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 200 MLKVLEDRkvflesayyseentmiptyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKN 279
Cdd:PRK14961 139 LLKTLEEP----------------------------PQHIKFILATT-DVEKIPKTILSRCLQFKLKIISEEKIFNFLKY 189
|
250 260 270
....*....|....*....|....*....|...
gi 1262413797 280 AAEKVEMQIGENGIEMIGMYARNG-REAINLVQ 311
Cdd:PRK14961 190 ILIKESIDTDEYALKLIAYHAHGSmRDALNLLE 222
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
61-309 |
7.42e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 52.09 E-value: 7.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 61 AEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAKR-NPKSP---------------F 123
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFcGPRGVGKTTCARIF---AKTiNCQNLtadgeacnecescvaF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 124 RTNATF--IELDATTArfdergiadpliGSVHDpIYQgagAMGQAGIPqPKKGAVTdahggILFIDEIGELHPIQMNKML 201
Cdd:PRK14971 85 NEQRSYniHELDAASN------------NSVDD-IRN---LIEQVRIP-PQIGKYK-----IYIIDEVHMLSQAAFNAFL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 202 KVLEDRkvflesayyseentmiPTYihdifqkglpADFRLvgATTRSpEEIPPAIRSRClEVF-FRELDTEEI----QKV 276
Cdd:PRK14971 143 KTLEEP----------------PSY----------AIFIL--ATTEK-HKILPTILSRC-QIFdFNRIQVADIvnhlQYV 192
|
250 260 270
....*....|....*....|....*....|....
gi 1262413797 277 AKNAAEKVEMQigenGIEMIGMYARNG-REAINL 309
Cdd:PRK14971 193 ASKEGITAEPE----ALNVIAQKADGGmRDALSI 222
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
59-144 |
9.85e-07 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 50.88 E-value: 9.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 59 PLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGKT----AAARLVLEEAKRNpkspfrtnaTFIELDA 134
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTtsilALAHELLGPNYKE---------AVLELNA 72
|
90
....*....|
gi 1262413797 135 TtarfDERGI 144
Cdd:PLN03025 73 S----DDRGI 78
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
72-206 |
1.39e-06 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 48.71 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 72 IVGQEDGIKSLKAALCGP-----NPQHVII----YGPPGVGKTAAARlVLEEAKrnpkspFRTNATFIELDATTarFDER 142
Cdd:cd19499 13 VVGQDEAVKAVSDAIRRAraglsDPNRPIGsflfLGPTGVGKTELAK-ALAELL------FGDEDNLIRIDMSE--YMEK 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1262413797 143 GIADPLIGSvhDPIYQGAGAMGQAgipqpkKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLED 206
Cdd:cd19499 84 HSVSRLIGA--PPGYVGYTEGGQL------TEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDD 139
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
63-331 |
1.50e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 50.97 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 63 KVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARL-----------VLEEAKRNPKSPFRTNATFI 130
Cdd:PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFsGPRGTGKTSVAKIfanalncshktDLLEPCQECIENVNNSLDII 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 131 ELDATTarfdERGIAD--PLIGSVhdpiyqgagamgqAGIPQPKKGAvtdahggILFIDEIGELHPIQMNKMLKVLEDRk 208
Cdd:PRK07133 91 EMDAAS----NNGVDEirELIENV-------------KNLPTQSKYK-------IYIIDEVHMLSKSAFNALLKTLEEP- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 209 vflesayyseentmiPTYIhdIFqkglpadfrlVGATTrSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQI 288
Cdd:PRK07133 146 ---------------PKHV--IF----------ILATT-EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY 197
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1262413797 289 GENGIEMIGMYARNG-REAINLV-QISagmaiNEERSFIKDEDIE 331
Cdd:PRK07133 198 EKNALKLIAKLSSGSlRDALSIAeQVS-----IFGNNKITLKNVE 237
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
59-319 |
1.58e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 50.63 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 59 PLAEKVRPTTFLDIVGQEDGIKSLK-AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAkrNPKSPFRTNATF-------- 129
Cdd:PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSyTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV--NCSALITENTTIktceqctn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 130 ------------IELDAT--TARFDERGIAD-----PLIGSVHdpiyqgagamgqagipqpkkgavtdahggILFIDEIG 190
Cdd:PRK06645 88 cisfnnhnhpdiIEIDAAskTSVDDIRRIIEsaeykPLQGKHK-----------------------------IFIIDEVH 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 191 ELHPIQMNKMLKVLEDRkvflesayyseentmiPTYIHDIFqkglpadfrlvgATTRSpEEIPPAIRSRCLEVFFRELDT 270
Cdd:PRK06645 139 MLSKGAFNALLKTLEEP----------------PPHIIFIF------------ATTEV-QKIPATIISRCQRYDLRRLSF 189
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1262413797 271 EEIQKVAKNAAEKVEMQIGENGIEMIGMYAR-NGREAINLVQISAGMAIN 319
Cdd:PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYKSEgSARDAVSILDQAASMSAK 239
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
61-309 |
2.25e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 49.87 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 61 AEKVRPTTFLDIVGQEDGIKSLKAALCGPN-PQHVIIYGPPGVGKTAAARLVLEEAKRNPKSPFRTNATF--IELDATTA 137
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENNHlAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFniFELDAASN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 138 RF--DERGIADpligsvhdpiyqgagamgQAGIPqPKKGAVTdahggILFIDEIGELHPIQMNKMLKVLEDRKVflesay 215
Cdd:PRK14970 88 NSvdDIRNLID------------------QVRIP-PQTGKYK-----IYIIDEVHMLSSAAFNAFLKTLEEPPA------ 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 216 yseentmiptyiHDIFqkglpadfrlVGATTRSpEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIGENGIEM 295
Cdd:PRK14970 138 ------------HAIF----------ILATTEK-HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHI 194
|
250
....*....|....*
gi 1262413797 296 IGMYARNG-REAINL 309
Cdd:PRK14970 195 IAQKADGAlRDALSI 209
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
64-248 |
2.43e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 47.49 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 64 VRPTTFLDIVGQEDGIKSL----KAALC-GPNPQHVIIYGPPGVGKTAAARLVLEEAKRNPKSpfrtnatfieldaTTAr 138
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKENLkifiEAAKQrGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI-------------TSG- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 139 fdergiadpligsvhdPIYQGAGAMgqAGI---PQPkkgavtdahGGILFIDEIGELHPIQMNKMLKVLEDRKVflesay 215
Cdd:pfam05496 67 ----------------PAIERPGDL--AAIltnLEP---------GDVLFIDEIHRLNRAVEEILYPAMEDFRL------ 113
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1262413797 216 yseentmiptyihDI-FQKG---------LPAdFRLVGATTRS 248
Cdd:pfam05496 114 -------------DIvIGKGpsarsirldLPP-FTLVGATTRA 142
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
71-209 |
2.69e-06 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 50.10 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 71 DIVGQEDGIKSLKA--ALCGPNPQHVIIYGPPGVGKTAAAR-LVLEEAKRNPKSPFRTNATFIELDATtarfderGIADP 147
Cdd:PRK15424 220 DLLGQSPQMEQVRQtiLLYARSSAAVLIQGETGTGKELAAQaIHREYFARHDARQGKKSHPFVAVNCG-------AIAES 292
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1262413797 148 LIGS----VHDPIYQGAGAMGQAGIpqpkkgaVTDAHGGILFIDEIGELH-PIQmNKMLKVLEDRKV 209
Cdd:PRK15424 293 LLEAelfgYEEGAFTGSRRGGRAGL-------FEIAHGGTLFLDEIGEMPlPLQ-TRLLRVLEEKEV 351
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
26-267 |
2.79e-06 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 50.49 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 26 LLRNQRTQKVS------IDRESKKELEQLRKMREISLTEPLAEKVRP----TTFLDIVGQEDG----IKSLKAA-LCGPN 90
Cdd:COG1221 50 LVKEGKLIKINgrpvlfLDKEAFEEQFGTKLKSEYSFVELLAEKENNeeeeDPFDNLIGANGSlknaIEQAKAAiLYPPK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 91 PQHVIIYGPPGVGKTAAARLVLEEAKRN----PKSPFRT-N----ATFIELdattarfdergIADPLIGSVhdpiyQGA- 160
Cdd:COG1221 130 GLHTLILGPTGVGKSFFAELMYEYAIEIgvlpEDAPFVVfNcadyANNPQL-----------LMSQLFGYV-----KGAf 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 161 -GAMgqagipQPKKGAVTDAHGGILFIDEIGELHPiQMNKMLKVLEDRKVFL---ESAyyseentmiptyihdifqKGLP 236
Cdd:COG1221 194 tGAD------KDKEGLIEKADGGILFLDEVHRLPP-EGQEMLFTFMDKGIYRrlgETE------------------KTRK 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 237 ADFRLVGATTRSPEE---------IP-----PAIRSRCLE-------VFFRE 267
Cdd:COG1221 249 ANVRIIFATTEDPESsllktflrrIPmviklPSLEERSLEerlelikHFFKE 300
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
65-301 |
2.89e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 49.31 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 65 RPTTFLDIVGQEDGIKSLKAALC-----GPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspFRTnatfieldaTTArf 139
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEaakkrGEALDHVLLYGPPGLGKTTLAHIIANEMGVN----IRI---------TSG-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 140 dergiadpligsvhdPIYQGAGAMgqAGIpqpkkgaVTD-AHGGILFIDEIgelHpiQMNKMLK-----VLEDRKVfles 213
Cdd:COG2255 88 ---------------PAIEKPGDL--AAI-------LTNlEEGDVLFIDEI---H--RLSRVVEeilypAMEDFRL---- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 214 ayyseentmiptyihDI-FQKG---------LPAdFRLVGATTR-----SPeeippaIRSRclevF---FReLD---TEE 272
Cdd:COG2255 135 ---------------DIvIGKGpaarsirldLPP-FTLVGATTRaglltSP------LRDR----FgivLR-LEfytVEE 187
|
250 260
....*....|....*....|....*....
gi 1262413797 273 IQKVAKNAAEKVEMQIGENGIEMIGMYAR 301
Cdd:COG2255 188 LAEIVKRSARILGVEIDEEGALEIARRSR 216
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
60-111 |
3.09e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 50.13 E-value: 3.09e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLV 111
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFtGARGVGKTSTARIL 58
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
58-310 |
3.90e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 49.69 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLV-----------LEEAKRNPKSPFRT 125
Cdd:PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFtGTRGVGKTTLGRLLakclncktgvtAEPCNKCENCVAIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 NATF---IELDATTarfdERGIADplIGSVHDPIYQgagamgqagipQPKKGAVTdahggILFIDEIGELHPIQMNKMLK 202
Cdd:PRK14957 84 NNSFidlIEIDAAS----RTGVEE--TKEILDNIQY-----------MPSQGRYK-----VYLIDEVHMLSKQSFNALLK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 203 VLEDRkvflesayyseentmiPTYIhdifqkglpadfRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAE 282
Cdd:PRK14957 142 TLEEP----------------PEYV------------KFILATT-DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA 192
|
250 260
....*....|....*....|....*....
gi 1262413797 283 KVEMQIGENGIEMIGMYARNG-REAINLV 310
Cdd:PRK14957 193 KENINSDEQSLEYIAYHAKGSlRDALSLL 221
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
60-262 |
7.15e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.08 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARL-----------------VLEEAKRNPKS 121
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFtGTRGVGKTTLSRIfakalncetgvtsqpcgVCRACREIDEG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 122 PFrtnATFIELDATTAR-FDErgIADPLIGSVHDPIyqgagamgqagipqpkkgavtDAHGGILFIDEIGELHPIQMNKM 200
Cdd:PRK07003 86 RF---VDYVEMDAASNRgVDE--MAALLERAVYAPV---------------------DARFKVYMIDEVHMLTNHAFNAM 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 201 LKVLEDrkvflesayyseentmiPtyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLE 262
Cdd:PRK07003 140 LKTLEE-----------------P-----------PPHVKFILATT-DPQKIPVTVLSRCLQ 172
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
60-285 |
1.01e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 48.17 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAK----RNPKSPFRTNAT------ 128
Cdd:PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFtGTRGVGKTTVSRIL---AKslncQGPDGQGGITATpcgvcq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 129 ------------FIELDATTAR-FDErgIADPLIGSVHDPIyqgagamgqagipqpkkgavtDAHGGILFIDEIGELHPI 195
Cdd:PRK14951 83 acrdidsgrfvdYTELDAASNRgVDE--VQQLLEQAVYKPV---------------------QGRFKVFMIDEVHMLTNT 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 196 QMNKMLKVLEDRkvflesayyseentmiPTYIhdifqkglpadfRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEI-- 273
Cdd:PRK14951 140 AFNAMLKTLEEP----------------PEYL------------KFVLATT-DPQKVPVTVLSRCLQFNLRPMAPETVle 190
|
250
....*....|....
gi 1262413797 274 --QKVAknAAEKVE 285
Cdd:PRK14951 191 hlTQVL--AAENVP 202
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
60-320 |
1.77e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARlVLEEAKRNPKSPFRTNAT---------- 128
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFtGTRGVGKTTLSR-ILAKSLNCTGADGEGGITaqpcgqcrac 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 129 ----------FIELDATTAR-FDErgIADPLIGSVHDPiyqGAGAMgqagipqpkkgavtdahgGILFIDEIGELHPIQM 197
Cdd:PRK12323 85 teidagrfvdYIEMDAASNRgVDE--MAQLLDKAVYAP---TAGRF------------------KVYMIDEVHMLTNHAF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 198 NKMLKVLEDrkvflesayyseentmiPtyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEI---- 273
Cdd:PRK12323 142 NAMLKTLEE-----------------P-----------PEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPGHIvshl 192
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 274 QKVAknAAEKVEMQIgeNGIEMIGMYARNG-REAINL----VQISAGMAINE 320
Cdd:PRK12323 193 DAIL--GEEGIAHEV--NALRLLAQAAQGSmRDALSLtdqaIAYSAGNVSEE 240
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
81-117 |
2.72e-05 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 46.76 E-value: 2.72e-05
10 20 30
....*....|....*....|....*....|....*..
gi 1262413797 81 SLKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKR 117
Cdd:PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
94-298 |
3.33e-05 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 46.38 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 94 VIIYGPPGVGKTAAARLVLEEAKRnpkspfrTNATFIELDAttARFDERGIADPLIGsvHDpiyQGA--GAMGQagipqp 171
Cdd:PRK11361 169 VLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNC--AALPESLLESELFG--HE---KGAftGAQTL------ 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 172 KKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKvfLESAYYSEEntmiptyihdifqkgLPADFRLVGATTRSPEE 251
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQERE--FERIGGHQT---------------IKVDIRIIAATNRDLQA 291
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1262413797 252 IPPAIRSRcLEVFFR----ELDT-------EEIQKVAKNAAEKVEmqiGENGIEMIGM 298
Cdd:PRK11361 292 MVKEGTFR-EDLFYRlnviHLILpplrdrrEDISLLANHFLQKFS---SENQRDIIDI 345
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
56-104 |
3.34e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 46.76 E-value: 3.34e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1262413797 56 LTEPLAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIYGPPGVGK 104
Cdd:PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
60-273 |
6.26e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 45.89 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARLVleeAKR---------NP---------- 119
Cdd:PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFtGTRGVGKTTLARIL---AKSlncetgvtaTPcgvcsaclei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 120 -KSPFrtnATFIELD-ATTARFDE-RGIADpligsvhDPIYqgagamgqagipqpkkgAVTDAHGGILFIDEIGELHPIQ 196
Cdd:PRK14969 83 dSGRF---VDLIEVDaASNTQVDAmRELLD-------NAQY-----------------APTRGRFKVYIIDEVHMLSKSA 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1262413797 197 MNKMLKVLEDrkvflesayyseentmiPtyihdifqkglPADFRLVGATTrSPEEIPPAIRSRCLEVFFRELDTEEI 273
Cdd:PRK14969 136 FNAMLKTLEE-----------------P-----------PEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPPLI 183
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
6-331 |
7.26e-05 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 45.00 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 6 NIFLVVQLVFGVIVGLYFWHLLRNQRTQKVSIDRESKKELEQLRKMREISLTEPL----AEKVRPTTFLDIVGQEDGIKS 81
Cdd:COG1222 10 NIKALLALIDALQERLGVELALLLQPVKALELLEEAPALLLNDANLTQKRLGTPRgtavPAESPDVTFDDIGGLDEQIEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 82 LKAALCGP-------------NPQHVIIYGPPGVGKTAAARLVLEEakrnpkspfrTNATFIELdattaRFDErgIADPL 148
Cdd:COG1222 90 IREAVELPlknpelfrkygiePPKGVLLYGPPGTGKTLLAKAVAGE----------LGAPFIRV-----RGSE--LVSKY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 149 IG----SVHDpIYQGAGAMGQAgipqpkkgavtdahggILFIDEI----------GELHPIQ--MNKMLKVLEDrkvfle 212
Cdd:COG1222 153 IGegarNVRE-VFELAREKAPS----------------IIFIDEIdaiaarrtddGTSGEVQrtVNQLLAELDG------ 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 213 sayYSEENTMIptyihdifqkglpadfrLVGATTRsPEEIPPAIRsRC----LEVFFRELDTEEIQKVAKNAAEKV---- 284
Cdd:COG1222 210 ---FESRGDVL-----------------IIAATNR-PDLLDPALL-RPgrfdRVIEVPLPDEEAREEILKIHLRDMplad 267
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1262413797 285 EMQIGENGIEMIGMyarNGREAINLVQiSAGM-AINEERSFIKDEDIE 331
Cdd:COG1222 268 DVDLDKLAKLTEGF---SGADLKAIVT-EAGMfAIREGRDTVTMEDLE 311
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
73-118 |
8.68e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 43.26 E-value: 8.68e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1262413797 73 VGQEDGIKSLKAAL---CGPNPQHVIIYGPPGVGKTAAARLVLEEAKRN 118
Cdd:pfam13191 3 VGREEELEQLLDALdrvRSGRPPSVLLTGEAGTGKTTLLRELLRALERD 51
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
159-209 |
1.28e-04 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 44.80 E-value: 1.28e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1262413797 159 GAGAMGQAgiPQPKKGAVTDAHGGILFIDEIGELHPiQM-NKMLKVLED---RKV 209
Cdd:COG3283 279 APGAFGNA--REGKKGLFEQANGGTVFLDEIGEMSP-QLqAKLLRFLQDgtfRRV 330
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
249-325 |
1.28e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.83 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 249 PEEIPPAIRSRCLEVFFRELDTEEIQKVAKNAAEKVEMQIGENGIEMIgMYARNG--REAINLVQISAGMA--INEERSF 324
Cdd:PRK04132 670 SSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI-LYIAEGdmRRAINILQAAAALDdkITDENVF 748
|
.
gi 1262413797 325 I 325
Cdd:PRK04132 749 L 749
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
98-206 |
1.42e-04 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 42.57 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 98 GPPGVGKTAAARLVLEEAkrnpkspFRTNATFIELDATTarFDERGIADPLIGSvhDPIYQGAGAMGQAgipqpkKGAVT 177
Cdd:pfam07724 10 GPTGVGKTELAKALAELL-------FGDERALIRIDMSE--YMEEHSVSRLIGA--PPGYVGYEEGGQL------TEAVR 72
|
90 100
....*....|....*....|....*....
gi 1262413797 178 DAHGGILFIDEIGELHPIQMNKMLKVLED 206
Cdd:pfam07724 73 RKPYSIVLIDEIEKAHPGVQNDLLQILEG 101
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
60-110 |
1.44e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 44.80 E-value: 1.44e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARL 110
Cdd:PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFtGPRGVGKTSTARI 57
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
268-334 |
3.12e-04 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 39.54 E-value: 3.12e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1262413797 268 LDTEEIQKVAKNAAE------KVEMQIGENGIEMIGMYAR-NGREAINLVQISAGMAINEERSFIKDEDIEWVV 334
Cdd:cd18139 1 LSEEDLEKLLKRALEdkerggDRKVTIDDEALELLAEAADgDARSALNLLELAVLSAEEDGGIVITLEDLEEVL 74
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
41-206 |
4.15e-04 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 43.12 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 41 SKKELEQLRKMREIsltepLAEKvrpttfldIVGQEDGI----KSLKAALCG-PNPQHVI----IYGPPGVGKTaaarlv 111
Cdd:CHL00095 493 TKSESEKLLHMEET-----LHKR--------IIGQDEAVvavsKAIRRARVGlKNPNRPIasflFSGPTGVGKT------ 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 112 lEEAKRNPKSPFRTNATFIELDATtaRFDERGIADPLIGSvhDPIYQGAGAMGQagipqpkkgaVTDA-----HGGILFi 186
Cdd:CHL00095 554 -ELTKALASYFFGSEDAMIRLDMS--EYMEKHTVSKLIGS--PPGYVGYNEGGQ----------LTEAvrkkpYTVVLF- 617
|
170 180
....*....|....*....|
gi 1262413797 187 DEIGELHPIQMNKMLKVLED 206
Cdd:CHL00095 618 DEIEKAHPDIFNLLLQILDD 637
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
60-110 |
7.56e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 42.20 E-value: 7.56e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAAL-CGPNPQHVIIYGPPGVGKTAAARL 110
Cdd:PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFeTGRIAQAFMLTGVRGVGKTTTARI 65
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
60-206 |
1.17e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 41.56 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAAR-----LVLEEAkrnPKS-PFRT------- 125
Cdd:PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFsGLRGSGKTSSARifaraLVCEQG---PSStPCDTciqcqsa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 126 ----NATFIELDATTarfdERGIADpligsVHDPIYQgagamgqagipqpKKGAVTDAHGGILFIDEIGELHPIQMNKML 201
Cdd:PRK08451 81 lenrHIDIIEMDAAS----NRGIDD-----IRELIEQ-------------TKYKPSMARFKIFIIDEVHMLTKEAFNALL 138
|
....*
gi 1262413797 202 KVLED 206
Cdd:PRK08451 139 KTLEE 143
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
60-110 |
1.42e-03 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 41.40 E-value: 1.42e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAALCGPNPQHVIIY-GPPGVGKTAAARL 110
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFsGPRGCGKTSSARI 54
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
62-130 |
1.53e-03 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 41.30 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 62 EKVRPTTFLDIVGQEDGIKSLKAA----LCGPN---------PQHVIIYGPPGVGKTAAARLVLEEakrnpkspfrTNAT 128
Cdd:PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAvelpLTHPElyddigikpPKGVILYGPPGTGKTLLAKAVANE----------TSAT 244
|
..
gi 1262413797 129 FI 130
Cdd:PTZ00361 245 FL 246
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
68-130 |
1.63e-03 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 39.63 E-value: 1.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1262413797 68 TFLDIVGQEDGIKSLKAALCGP-------------NPQHVIIYGPPGVGKTAAARLVLEeakrnpkspfRTNATFI 130
Cdd:cd19502 1 TYEDIGGLDEQIREIREVVELPlkhpelfeelgiePPKGVLLYGPPGTGKTLLAKAVAN----------HTDATFI 66
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
72-192 |
2.01e-03 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 39.26 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 72 IVGQEDGIKSLKAALCGPN------------PQHVIIYGPPGVGKTAAARLVLEEakrnpkspfrTNATFIELDATTARF 139
Cdd:cd19509 1 IAGLDDAKEALKEAVILPSlrpdlfpglrgpPRGILLYGPPGTGKTLLARAVASE----------SGSTFFSISASSLVS 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1262413797 140 DERGIADPLIGSVHDpiyqgagamgQAGIPQPkkgavtdahgGILFIDEIGEL 192
Cdd:cd19509 71 KWVGESEKIVRALFA----------LARELQP----------SIIFIDEIDSL 103
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
94-209 |
2.13e-03 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 40.59 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 94 VIIYGPPGVGKTaaarlVLEEAKRNpKSPfRTNATFIELDAttARFDERGIADPLIGSVhdpiyQGA--GAMGQagipqp 171
Cdd:PRK15115 160 VLINGQSGTGKE-----ILAQAIHN-ASP-RASKPFIAINC--GALPEQLLESELFGHA-----RGAftGAVSN------ 219
|
90 100 110
....*....|....*....|....*....|....*...
gi 1262413797 172 KKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKV 209
Cdd:PRK15115 220 REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKV 257
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
67-116 |
2.20e-03 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 39.14 E-value: 2.20e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1262413797 67 TTFLDIVGQEDGIKSLK------------AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 116
Cdd:cd19501 1 VTFKDVAGCEEAKEELKevveflknpekfTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 62
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
58-109 |
2.76e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 40.33 E-value: 2.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1262413797 58 EPLAEKVRPTTFLDIVGQEDGIKSLKAAL-----------CGPNpqhviiygppGVGKTAAAR 109
Cdd:PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALisnriapaylfTGPR----------GTGKTSSAR 56
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
43-116 |
3.64e-03 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 38.43 E-value: 3.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1262413797 43 KELEQLRKMREISLTEPLaekvrpttfldiVGQEDGIKSlkaalcgpnPQHVIIYGPPGVGKTAAARLVLEEAK 116
Cdd:cd19503 7 EQIASLKELIELPLKYPE------------LFRALGLKP---------PRGVLLHGPPGTGKTLLARAVANEAG 59
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
72-109 |
5.31e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 39.00 E-value: 5.31e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1262413797 72 IVGQEDGIKSLKAAL-CGpnpQHVIIYGPPGVGKTAAAR 109
Cdd:COG0714 14 YVGQEELIELVLIALlAG---GHLLLEGVPGVGKTTLAK 49
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
25-117 |
5.85e-03 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 39.08 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 25 HLLRNQRTQKVSIDRESKKELEQLRKMrEIS--LTEPLAEKVRPTtfldiVGQEDGIKSLKAALCG---------PNPQH 93
Cdd:COG1419 92 EQLSGLAGESARLPPELAELLERLLEA-GVSpeLARELLEKLPED-----LSAEEAWRALLEALARrlpvaedplLDEGG 165
|
90 100 110
....*....|....*....|....*....|
gi 1262413797 94 VII-YGPPGVGKT---A--AARLVLEEAKR 117
Cdd:COG1419 166 VIAlVGPTGVGKTttiAklAARFVLRGKKK 195
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
42-115 |
8.20e-03 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 37.42 E-value: 8.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1262413797 42 KKELEQLRKMREISLTEP-LAEKVrpttfldivgqedGIKSlkaalcgpnPQHVIIYGPPGVGKTAAARLVLEEA 115
Cdd:cd19519 6 RKQLAQIREMVELPLRHPeLFKAI-------------GIKP---------PRGILLYGPPGTGKTLIARAVANET 58
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
60-207 |
9.01e-03 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 38.58 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1262413797 60 LAEKVRPTTFLDIVGQEDGIKSLKAAL--CGPNPQHVIIYGPPGVGKTAAARLVLEEAKRNpkspfrtNATFIELDAttA 137
Cdd:TIGR02915 129 LQSALGGTALRGLITSSPGMQKICRTIekIAPSDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINC--A 199
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1262413797 138 RFDERGIADPLIGsvHDpiyQGA--GAMGQAgipqpkKGAVTDAHGGILFIDEIGELhPIQMN-KMLKVLEDR 207
Cdd:TIGR02915 200 AIPENLLESELFG--YE---KGAftGAVKQT------LGKIEYAHGGTLFLDEIGDL-PLNLQaKLLRFLQER 260
|
|
| |
