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Conserved domains on  [gi|1263439876|gb|PGA06359|]
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spermidine/putrescine ABC transporter permease [Bacillus mycoides]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-254 1.62e-105

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 306.65  E-value: 1.62e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   2 KKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINA-EWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFA 80
Cdd:COG1177     6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  81 IALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:COG1177    86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:COG1177   166 RDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSL 245

                         250
                  ....*....|....
gi 1263439876 241 GLMVLSEIFRNKGA 254
Cdd:COG1177   246 LLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-254 1.62e-105

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 306.65  E-value: 1.62e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   2 KKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINA-EWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFA 80
Cdd:COG1177     6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  81 IALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:COG1177    86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:COG1177   166 RDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSL 245

                         250
                  ....*....|....
gi 1263439876 241 GLMVLSEIFRNKGA 254
Cdd:COG1177   246 LLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-252 3.07e-89

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 264.92  E-value: 3.07e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   1 MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFA 80
Cdd:PRK09500    2 GRLLRGGFMTLVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  81 IALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:PRK09500   82 VALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:PRK09500  162 KDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL 241

                         250
                  ....*....|..
gi 1263439876 241 GLMVLSEIFRNK 252
Cdd:PRK09500  242 VLVILSQLLARD 253
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 3-252 5.43e-24

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 97.42  E-value: 5.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   3 KFLVSYSWLILLFLYF-PMMVLMVYSFNDSrinaeWEGFtLHWYTDlfqkQDVIDAFVNSMTIAVITTIVTTVLGVIFAI 81
Cdd:TIGR00969  16 KLSLGIALLYVFLILIlPVAALFVQAFSKG-----LGQF-WQNATD----PIAVSAYNLTLLMALIAVPLNGVFGLLIAW 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  82 ALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLG------------MELGKTTIIIAHITFSISFVVVILAARL 149
Cdd:TIGR00969  86 VLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGwlgswlasfgiqIIFTWPGMALAMIFVSLPFVVREVQPVL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 150 SGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSG--PGST-TLPLYIYSMVKRGVSP 226
Cdd:TIGR00969 166 EELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGniPGKTlTLPLLIEERLEQYDYP 245

                         250       260
                  ....*....|....*....|....*.
gi 1263439876 227 EINALSTILIVVIVGLMVLSEIFRNK 252
Cdd:TIGR00969 246 GAYVIAAVLLLVSLVTLFLINALQAR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 58-240 4.75e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.02  E-value: 4.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  58 FVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGK----TTIIIAH 133
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglgLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 134 ITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLP 213
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*..
gi 1263439876 214 LYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 73-249 1.55e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  73 TVLGVIFAIALHRykyRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGM 152
Cdd:pfam00528   2 IPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 153 GRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFV-ISFFVSGPGSTTLPLYIYSMvkrGVSPEINAL 231
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVlLEFLGSWPGLGLLLIEAILG---YDYPEIQGP 155

                         170
                  ....*....|....*...
gi 1263439876 232 STILIVVIVGLMVLSEIF 249
Cdd:pfam00528 156 VLAAALILLLLNLLVDIL 173
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 61-171 1.19e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 38.68  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  61 SMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQ------LGMELGKTTIIIAHI 134
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1263439876 135 TFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTF 171
Cdd:NF038017   81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-254 1.62e-105

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 306.65  E-value: 1.62e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   2 KKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINA-EWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFA 80
Cdd:COG1177     6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  81 IALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:COG1177    86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:COG1177   166 RDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSL 245

                         250
                  ....*....|....
gi 1263439876 241 GLMVLSEIFRNKGA 254
Cdd:COG1177   246 LLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-252 3.07e-89

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 264.92  E-value: 3.07e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   1 MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFA 80
Cdd:PRK09500    2 GRLLRGGFMTLVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  81 IALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:PRK09500   82 VALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:PRK09500  162 KDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL 241

                         250
                  ....*....|..
gi 1263439876 241 GLMVLSEIFRNK 252
Cdd:PRK09500  242 VLVILSQLLARD 253
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 15-243 7.74e-65

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 203.93  E-value: 7.74e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  15 FLYFPMMVLMVYSFNDSRINAEWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKyRFEGAi 94
Cdd:PRK10592   22 FLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFG-RFRGS- 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  95 NGLVYL---PILIPDILMGLSLLILFSQLG------MELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGA 165
Cdd:PRK10592  100 NGFAFMitaPLVMPDVITGLSLLLLFVALAhaigwpADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGA 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 166 TPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVV--IVGLM 243
Cdd:PRK10592  180 TPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGVvgIVGFI 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
4-249 3.74e-43

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 153.78  E-value: 3.74e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   4 FLVSYSWLILLFLYFPMMVLMVYSFNDsrinAEWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIAL 83
Cdd:COG1178   290 ALALCLLLVLLGLLLPLLALLLWSLTK----ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLV 365

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  84 HRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTT---IIIAHITFSISFVVVILAARLSGMGRDLEEAA 160
Cdd:COG1178   366 RRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTlaiLVLAYVVRFLPFALRSLEAALAQIDPSLEEAA 445

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 161 NDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:COG1178   446 RSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSL 525


                  ....*....
gi 1263439876 241 GLMVLSEIF 249
Cdd:COG1178   526 LPVLLLERL 534
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 10-245 1.96e-38

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 135.66  E-value: 1.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  10 WLILLFLYfPMMVLMVYSFND-SRINAEWEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKY 88
Cdd:COG1176    21 WLLLFFVL-PLLLLLVYSFTTrDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPP 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  89 RFEGAINGLVYLPILIPDILMGLSLLILFSQLG------MELG-----------KTTIIIAHITFSISFVVVILAARLSG 151
Cdd:COG1176   100 RWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGllnsllLALGlideplrllytEFAVVIGLVYVYLPFMVLPLYAALEK 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 152 MGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVS-PEINA 230
Cdd:COG1176   180 IDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNwPLAAA 259

                         250
                  ....*....|....*
gi 1263439876 231 LSTILIVVIVGLMVL 245
Cdd:COG1176   260 LAVVLLLIVLLVLLL 274
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 4-253 3.96e-35

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 126.79  E-value: 3.96e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   4 FLVSYSWLILLFLYfPMMVLMVYSFNDSrinaeWEGFTlhwytDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIAL 83
Cdd:COG0555    13 LGLTLLYLSLIVLL-PLAALVLKAAGLG-----WAEFW-----AVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  84 HRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLG------MELG------KTTIIIAHITFSISFVVVILAARLSG 151
Cdd:COG0555    82 VRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGwlgqllAPLGikvaftPLGIVLAQTFVSLPFVVRTVQPVLEE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 152 MGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSG--PGST-TLPLYIYSMVKRGVSPEI 228
Cdd:COG0555   162 LDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGnlPMKTeILPLLIYLKLEEGDYAGA 241

                         250       260
                  ....*....|....*....|....*
gi 1263439876 229 NALSTILIVVIVGLMVLSEIFRNKG 253
Cdd:COG0555   242 TAIALVLLLISFLLLLLINLLQRRS 266
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-252 3.12e-34

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 129.13  E-value: 3.12e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   9 SWLILLFLYFPMMVLMVYSFNDSrinaewegftLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKY 88
Cdd:COG1178    17 ALLLALLVLLPLLALLLRAFTDG----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  89 RFEGAINGLVYLPILIPDILMGLSLLILFSQ-------LGMELGKTT--------IIIAHITFSISFVVVILAARLSGMG 153
Cdd:COG1178    87 PGRRLLRWLLLLPLALPPYVVALAWIALFGPngllntlLRALFGLEPpdiyglggIILVLVLFNYPYVYLLLRAALRSID 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 154 RDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDF-VISFFvsGPGSTTLPLYIYSMVK-RGVSPEINAL 231
Cdd:COG1178   167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFgTPLVL--GGGYTTLTTAIYQAWLgDFDLGAAAAL 244

                         250       260
                  ....*....|....*....|.
gi 1263439876 232 STILIVVIVGLMVLSEIFRNK 252
Cdd:COG1178   245 ALVLLLLVLLLLLLERRLRRR 265
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 10-245 1.22e-29

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 112.50  E-value: 1.22e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  10 WLILLFLYFPMMVLMVYSFNDS----RINAEW--EGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIAL 83
Cdd:COG0395    22 ILLALLFLFPLYWMVVTSFKPPaeifSGPPSLlpSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYAL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  84 HRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDL 163
Cdd:COG0395   102 ARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARID 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 164 GATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISF-FVSGPGSTTLPLYIYSMVkRGVSPEINALSTILIVVIVGL 242
Cdd:COG0395   182 GASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLiLLTSPDLRTLPVGLASFQ-GQYGTDWGLLMAAAVIATLPV 260


                  ...
gi 1263439876 243 MVL 245
Cdd:COG0395   261 LIL 263
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
11-245 4.51e-28

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 108.68  E-value: 4.51e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  11 LILLFLYFPMMVLMVYSFNDSRINAEWEGFT-LHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRyKYR 89
Cdd:COG1175    30 LLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLR 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  90 FEGAINGLVYLPILIPDILMGLSLLILFS-----------QLGME---------LGKTTIIIAHITFSISFVVVILAARL 149
Cdd:COG1175   109 GRGFFRTLFFLPWVISPVVVALIWKWLFNpdygllnallgALGLEpinwlgdpsLALPAVIIVTVWKGTGFNMLIFLAGL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 150 SGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVS--GPG--STTLPLYIYSMVKR--- 222
Cdd:COG1175   189 QSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTggGPGnsTTTLVLYIYQTAFQqfd 268

                         250       260
                  ....*....|....*....|....
gi 1263439876 223 -GVSpeiNALSTILIVVIVGLMVL 245
Cdd:COG1175   269 fGYA---SAIAVVLFLIILVLTLL 289
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 3-252 5.43e-24

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 97.42  E-value: 5.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   3 KFLVSYSWLILLFLYF-PMMVLMVYSFNDSrinaeWEGFtLHWYTDlfqkQDVIDAFVNSMTIAVITTIVTTVLGVIFAI 81
Cdd:TIGR00969  16 KLSLGIALLYVFLILIlPVAALFVQAFSKG-----LGQF-WQNATD----PIAVSAYNLTLLMALIAVPLNGVFGLLIAW 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  82 ALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLG------------MELGKTTIIIAHITFSISFVVVILAARL 149
Cdd:TIGR00969  86 VLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGwlgswlasfgiqIIFTWPGMALAMIFVSLPFVVREVQPVL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 150 SGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSG--PGST-TLPLYIYSMVKRGVSP 226
Cdd:TIGR00969 166 EELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGniPGKTlTLPLLIEERLEQYDYP 245

                         250       260
                  ....*....|....*....|....*.
gi 1263439876 227 EINALSTILIVVIVGLMVLSEIFRNK 252
Cdd:TIGR00969 246 GAYVIAAVLLLVSLVTLFLINALQAR 271
modB PRK09421
molybdate ABC transporter permease subunit;
55-254 1.96e-22

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 92.29  E-value: 1.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  55 IDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMeLGKTTIIIAHI 134
Cdd:PRK09421    8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGF-IGQWLYEWFGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 135 TFS------------ISFVVVILAARLS--GMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDF-- 198
Cdd:PRK09421   87 SFAfswrgaalaaavMAFPLMVRAIRLSleAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFga 166

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1263439876 199 VISFFVSGPGST-TLPLYIYSMVKrgvSP--EINALSTILIVVIVGL--MVLSEIFRNKGA 254
Cdd:PRK09421  167 TITFVSNIPGETqTIPSAMYTLIQ---TPggESAAARLCIISIAIALasLLLSEWLARRSR 224
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 4-206 3.92e-22

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 95.13  E-value: 3.92e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   4 FLVSYSWLILLFLYFPMMVLMVYSFNDSriNAEWEGftLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIAL 83
Cdd:TIGR03262   6 LLAGMILALLLFLLLPLLALLTKSVYDS--DGDFIG--LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  84 HRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGME---------LGKTTIIIAHITFSISFVVVILAARLSGMGR 154
Cdd:TIGR03262  82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLkgllggfsiYGFWGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1263439876 155 DLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSG 206
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG 213
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 58-240 4.75e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.02  E-value: 4.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  58 FVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGK----TTIIIAH 133
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglgLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 134 ITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLP 213
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*..
gi 1263439876 214 LYIYSMVKRGVSPEINALSTILIVVIV 240
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLL 187
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
41-206 2.62e-17

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 79.41  E-value: 2.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  41 TLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFS-- 118
Cdd:PRK10971   43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSvn 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 119 --------QLGMELGKT--TIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAAL 188
Cdd:PRK10971  123 gwygewlaKFDIKVTYTwlGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVA 202

                         170
                  ....*....|....*...
gi 1263439876 189 LTFTLSIDDFVISFFVSG 206
Cdd:PRK10971  203 LSFTRSLGEFGAVIFIAG 220
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 11-254 3.19e-17

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 79.08  E-value: 3.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  11 LILLFLYFPMMVLMVYSFNDsrinaEWEGFTLHWYTDLFQKQdVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYK-YR 89
Cdd:COG4132    24 FVLLFLLLPTVWVVIGAFQD-----DDGGFTLANYAELTSPF-YLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGpGW 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  90 FEGAINGL---------VYLPI-LIpdILMGLSLLI--LFSQLGMEL-------GKTTIIIAHITFSISFVVVILAARLS 150
Cdd:COG4132    98 LRRAVLAFsgvasnfagVPLAFaFI--ATLGRNGLVtlLLKQLGIDLydgfnlySFWGLILVYLYFQIPLMVLLLYPALD 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 151 GMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEIN- 229
Cdd:COG4132   176 GLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGGNYNLVPIRIGALISGDVLLDPNl 255

                         250       260
                  ....*....|....*....|....*..
gi 1263439876 230 --ALSTILIVVIVGLMVLSEIFRNKGA 254
Cdd:COG4132   256 gaALALGMIVIMALVMALYQWLQRRSR 282
cysT CHL00187
sulfate transport protein; Provisional
 4-198 5.28e-17

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 77.75  E-value: 5.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   4 FLVSYSWLILLFLyFPMMVLMVYSFNDSrinaewegftlhWYTDLFQKQD--VIDAFVNSMTIAVITTIVTTVLGVIFAI 81
Cdd:CHL00187   14 YIISLSYIIFLLV-LPILALLIKASQQP------------WSDFLQKATEpiALSAYSLTLSMALIAALINGFFGLLIAW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  82 ALHRYKYRFEGAINGLVYLPILIPDILMGLSLLI----------LFSQLGMEL--GKTTIIIAHITFSISFVVVILAARL 149
Cdd:CHL00187   81 VLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATvygdngwighLLSHLGIQIvfTKLGVLLAMIFVSFPFVVRTIQPVL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1263439876 150 SGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDF 198
Cdd:CHL00187  161 QEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 54-238 1.98e-16

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 76.59  E-value: 1.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  54 VIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQ----------LGME 123
Cdd:TIGR02139  48 VLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPngwigsflapLGIK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 124 LGKTT--IIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVIS 201
Cdd:TIGR02139 128 IAFTPlgIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSV 207

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1263439876 202 FFVSG--PGST-TLPLYIYSMVKRGVSPEINALSTILIVV 238
Cdd:TIGR02139 208 IFIAGnlPMKTeIAPLLIFQKLEQYDYAGATAIASVMLII 247
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 11-218 2.61e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 76.58  E-value: 2.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  11 LILLFLYfPMMVLMVYSFNDSrinaewEGFTLHWYTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRF 90
Cdd:PRK15050   35 LAPLVVY-PLVRVVLQSLTGE------HGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPG 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  91 EGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTT------------------IIIAHITFSISFVVVILAARLSGM 152
Cdd:PRK15050  108 ASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQrlfgleappldflyspggVILAEITFYTPFVVRPLLAAFAQL 187

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1263439876 153 GRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYS 218
Cdd:PRK15050  188 DARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYS 253
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 11-195 1.28e-13

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 70.28  E-value: 1.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  11 LILLFLYFPMMVLM-VYSFNDS-RINAEW-EGFTL-HWYTDLFqkqDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRY 86
Cdd:COG4135   310 LLIALLSLLGLALLlLWSFAGRwRFPDALpSSWTLrFWQRAAP---GLLEPLGNTLLLALASALIALVLVLACLEAEARR 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  87 KYRFEGAINGLVYLPILIPDI--LMGLSllILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLG 164
Cdd:COG4135   387 GRRPGRRALWLLYLPLLVPQIafLFGLQ--VLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLG 464

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1263439876 165 ATPWQTFRYVTFPAIAPGVISAALLTFTLSI 195
Cdd:COG4135   465 ASPWRVFWRVKLPLLLRPILTAAAVGFAVSV 495
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 57-252 4.27e-11

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 61.59  E-value: 4.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  57 AFVNSMTIAVITTIVTTVLGVIFAIALHRY--KYRFEGAINGLVYlpIL--IPDILMGLSLLILFSQLgmeLGKTTIIIA 132
Cdd:COG0581    42 AIVGTLLLVLLATLIAVPLGVLAAIYLAEYarGGRLARLIRFAID--VLagVPSIVYGLFGYALFVLT---LGLGFSLLA 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 133 HItFSISFV---VVILAAR--LSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDD-----FVISF 202
Cdd:COG0581   117 GA-LALALLmlpVVIRTTEeaLRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapllFTAGV 195

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1263439876 203 FVSGPGS-----TTLPLYIYSMVKRGVSPEIN---ALSTILIVVIVGLMVLSEIFRNK 252
Cdd:COG0581   196 SPFLPLSlfdpfATLPVHIYNLASSPYPAAQElawAAALVLLLLVLLLNLLARLLRRR 253
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 73-249 1.55e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  73 TVLGVIFAIALHRykyRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGM 152
Cdd:pfam00528   2 IPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 153 GRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFV-ISFFVSGPGSTTLPLYIYSMvkrGVSPEINAL 231
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVlLEFLGSWPGLGLLLIEAILG---YDYPEIQGP 155

                         170
                  ....*....|....*...
gi 1263439876 232 STILIVVIVGLMVLSEIF 249
Cdd:pfam00528 156 VLAAALILLLLNLLVDIL 173
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 57-218 1.41e-07

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 52.14  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  57 AFVNSMTIAVITTIVTTVLGVIFA-----IALHRYKyRFEGAINGLVYLPILIPDILMGLSLLILFSQLGMelgkttiii 131
Cdd:PRK09433  320 ALWTSLRIALAAALLAVVLTMMLLwssreLRLRQRK-LAAQALELSGMLILAMPGIVLATGLFLLLRNTTD--------- 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 132 ahiTFSISFVVVILAARLSGMG---RDLEEAAND-----------LGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDD 197
Cdd:PRK09433  390 ---LPASALGIVILTNALMALPyalRVLEPPMRDiaarygrlcqsLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGD 466

                         170       180
                  ....*....|....*....|..
gi 1263439876 198 F-VISFFvSGPGSTTLPLYIYS 218
Cdd:PRK09433  467 FgVIALF-GSQDFRTLPFLLYQ 487
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 6-245 1.48e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 51.23  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   6 VSYSWLILlFLYFPMMVLMVYSF--NDSRINAEWEgFTLHWYTDLFQKQdVIDAFVNSMTIAVITTIVTTVLGVIFAIAL 83
Cdd:PRK09497   14 TIVGWLVL-FVFLPNLMIIGTSFltRDDANFVKMV-FTLDNYTRLLDPL-YAEVLLHSLNMALIATLACLVLGYPFAWFL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  84 HRYKYRFEGAINGLVYLP------ILIPDILMGLSLLILFSQLGMELG-----------KTTIIIAHITFSISFVVVILA 146
Cdd:PRK09497   91 AKLPHKVRPLLLFLLIVPfwtnslIRIYGLKIFLSTKGYLNEFLLWLGvidtpirimftESAVIIGLVYILLPFMVLPLY 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 147 ARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSP 226
Cdd:PRK09497  171 SSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDW 250

                         250
                  ....*....|....*....
gi 1263439876 227 EINALSTILIVVIVGLMVL 245
Cdd:PRK09497  251 PFGAATSITLTIVMGLMLL 269
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 44-262 1.55e-07

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 51.84  E-value: 1.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  44 WYTDLFQKQDVIDAFVNsmtiAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQ---- 119
Cdd:TIGR01253  39 VFQDDYLQHLILFSFGQ----AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRqgwl 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 120 ------LGME-----LGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAAL 188
Cdd:TIGR01253 115 atlanlFGLEwqfhiYGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAA 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1263439876 189 LTFTLSIDDFVISFFV-SGPGSTTLPLYIYSMVKRGVSPEINALSTIL-IVVIVGLMVLSEIFRNKGADGEENSGG 262
Cdd:TIGR01253 195 LIFMLCFASFATVLSLgGGPQATTIELAIYQAILFDFDLAKAALFALLqFVCCLGLFLLSQRFSKAIANGLSLLNG 270
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 3-252 1.61e-07

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 51.08  E-value: 1.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   3 KFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTLHWyTDLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIA 82
Cdd:TIGR00974   2 KIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSP-TPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  83 LHRY--KYRFEGAINGLVYLPILIPDILMGLSLLILFSqLGMELGKTTIIIAHITFSISFV-VVILAAR--LSGMGRDLE 157
Cdd:TIGR00974  81 LAEYanGSRFTKIIRFAVDILAGVPSIVVGLFGYGFFV-LTYLGGGFSLLAGALALALLILpVIIRTTEeaLKAVPKDLR 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 158 EAANDLGATPWQTFRYVTFPAIAPGVISAALLT------------FTLSIDDFVISFFVSGPgsTTLPLYIYSMVKRGVS 225
Cdd:TIGR00974 160 EASLALGATKWQTIFKVVLPAALPGILTGIILSiaraagetapllFTAGGSAFTPPNLFDPF--ATLPVLIYNLASEGPY 237

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1263439876 226 PEIN----ALSTILIVVIVGLMVLSEIFRNK 252
Cdd:TIGR00974 238 VEAQqlawAAALVLIVLVLLLNLIARLLRRR 268
malG PRK10998
maltose ABC transporter permease MalG;
60-195 2.88e-07

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 50.48  E-value: 2.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  60 NSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQLGME---LGKTT---IIIAH 133
Cdd:PRK10998   87 NSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYipfIGLNThggVIFAY 166

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1263439876 134 ITfSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSI 195
Cdd:PRK10998  167 LG-GIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI 227
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 47-195 4.74e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 49.76  E-value: 4.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  47 DLFQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKyRFEGAINGLVYLPILIPDILMGLSLLILFSqlgmeLGK 126
Cdd:COG0600    52 ELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPPLALAPLLILWFG-----IGE 125

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1263439876 127 TTIIIahITFSISFVVVILAAR--LSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSI 195
Cdd:COG0600   126 ASKIF--VIFLGAFFPILLNTAagVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 8-209 3.01e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 47.40  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876   8 YSWLILLFLyFPMMVLMVYSFNDSRInaewegfTLHWYTDLFQKQD--------------------VIDAFVNSMTIAVI 67
Cdd:PRK10683   37 YLWLILLFL-LPFLIVFKISLAEMAR-------AIPPYTDLMEWADgqlsitlnlgnflqltddplYFDAYLQSLQVAAI 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  68 TTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLP--------------IL-----IPDILMGLS-----LLILFSQLGME 123
Cdd:PRK10683  109 STLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPswtsflirvyawmgILknngvLNNFLLWLGvidqpLTILHTNLAVY 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 124 LGkttIIIAHITFsisFVVVILAArLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFF 203
Cdd:PRK10683  189 IG---IVYAYLPF---MVLPIYTA-LTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPEL 261


                  ....*.
gi 1263439876 204 VSGPGS 209
Cdd:PRK10683  262 LGGPDS 267
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
53-216 1.02e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 45.90  E-value: 1.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  53 DVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQ---LGMELGKTTI 129
Cdd:PRK11602   61 DMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSngpLGGWLDEHNL 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 130 ---------IIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVI 200
Cdd:PRK11602  141 qlmfswpgmVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGA 220

                         170
                  ....*....|....*....
gi 1263439876 201 SFFVSGP--GST-TLPLYI 216
Cdd:PRK11602  221 VSVVSGSirGETlSLPLQI 239
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 56-191 1.46e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 45.83  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  56 DAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYR--FEGAINGLVYLPILIPDILMGLSLLILFSQLGMELG---KTTII 130
Cdd:TIGR03262 332 EAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFglLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPTNPLNglyGTMAL 411

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1263439876 131 IAHIT----FSISFVVVILAarLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTF 191
Cdd:TIGR03262 412 LVLCTvvhfYTVSHLTAVTA--LKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLF 474
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 65-245 1.48e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 45.98  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  65 AVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDI--LMGL--------SLLILFSQLGMEL-----GKTTI 129
Cdd:PRK09433   53 AFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLvaVFGLlsvygrsgWLAQLLQALGLEWpfsiyGLQGI 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876 130 IIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSG-PG 208
Cdd:PRK09433  133 LLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFATVLTLGGgPK 212

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1263439876 209 STTLPLYIYSMVKRGVSPEINALSTILIVVIVGLMVL 245
Cdd:PRK09433  213 ATTIELAIYQALSFDFDLARAALLALLQMVLCLGLVL 249
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 154-191 3.96e-05

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 43.93  E-value: 3.96e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1263439876 154 RDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTF 191
Cdd:COG0573   184 RSLREAALALGATRWETIRKVVLPAARSGIIAAVILGL 221
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 11-220 3.63e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 41.44  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  11 LILLFLYFPMMVLMVYSFNDSRINAEWEGFTLhWytdlfqkqdviDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKYRF 90
Cdd:TIGR01253 290 LALFFLFPPLLAIIIDALNSRNLLEVLANPQL-W-----------QALGTSLRIALAAALLALTLAIALLLLSRELEALH 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  91 EGAIN------GLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLG 164
Cdd:TIGR01253 358 KMKAGqfiemaGMLILAIPGIVLAMGFFLLLNDRDFLNIDADGIVIFCNALMAIPFALKILEAPFHDIMARYEMLCNSLG 437

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1263439876 165 ATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMV 220
Cdd:TIGR01253 438 IEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYQQI 493
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 42-190 7.28e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 39.65  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  42 LHWYTDlfQKQDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRYKyRFEGAINGLVYLPILIPDILMgLSLLILFsqLG 121
Cdd:COG1174     6 IEWLAD--NRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRR-RLAGLVLGVANILQTIPSLAL-LALLIPL--LG 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1263439876 122 meLGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAP----GVISAALLT 190
Cdd:COG1174    80 --IGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPvilaGIRTAAVQN 150
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 154-218 7.69e-04

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 39.94  E-value: 7.69e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1263439876 154 RDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYS 218
Cdd:TIGR02138 179 RSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVFPISPLSLFD 243
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 52-191 1.06e-03

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 39.29  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  52 QDVIDAFVNSMTIAVITTIVTTVLGVIFAIALHRykyrfEGAINGLVYLPIL--------IPDILMGLSLLILFSqlgme 123
Cdd:COG3639    47 PDLLSALLETLAIALLGTLLGAVLALPLAFLAAR-----NLAPNPWVRLLARrllnvlraIPELVWALIFVAAVG----- 116

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1263439876 124 LGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFPAIAPGVISAALLTF 191
Cdd:COG3639   117 LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYTLYRF 184
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 61-171 1.19e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 38.68  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  61 SMTIAVITTIVTTVLGVIFAIALHRYKYRFEGAINGLVYLPILIPDILMGLSLLILFSQ------LGMELGKTTIIIAHI 134
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQA 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1263439876 135 TFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTF 171
Cdd:NF038017   81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 54-177 6.03e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 36.98  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1263439876  54 VIDAFVNSMTIAVITTIVTTVLGVIFAIALhRYKYRFegaINGLVYLPIlipDILMGLSLLIL-------FSQLGMELGK 126
Cdd:COG0765    15 LLEGLLVTLLLTVLAIVLGLVLGLLLALAR-LSPNPV---LRWLATAYV---EFFRGTPLLVQlffiyfgLPLLGIDLSP 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1263439876 127 -TTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRYVTFP 177
Cdd:COG0765    88 fVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILP 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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