NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1264560133|gb|PGL04626|]
View 

phosphatidylserine synthase [Bacillus cereus]

Protein Classification

PLD nuclease N-terminal domain-containing protein( domain architecture ID 10598388)

phospholipase D (PLD) nuclease N-terminal domain-containing protein similar to Bacillus subtilis negative regulatory protein YxlE that is, together with YxlD, important for negative regulation of sigma Y activity

Gene Ontology:  GO:0005886
PubMed:  12897008

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLDc_N pfam13396
Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of ...
 31-73 7.13e-06

Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.


:

Pssm-ID: 463867 [Multi-domain]  Cd Length: 43  Bit Score: 38.90  E-value: 7.13e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1264560133 31 LLVFIALIDLYRHRKTRKNVLVWTLIILFVNVLGPILYFVIGR 73
Cdd:pfam13396  1 ILAIIALIDIIRRRRNPSSKLAWLLVILFLPVLGPILYLLFGR 43
 
Name Accession Description Interval E-value
PLDc_N pfam13396
Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of ...
 31-73 7.13e-06

Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.


Pssm-ID: 463867 [Multi-domain]  Cd Length: 43  Bit Score: 38.90  E-value: 7.13e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1264560133 31 LLVFIALIDLYRHRKTRKNVLVWTLIILFVNVLGPILYFVIGR 73
Cdd:pfam13396  1 ILAIIALIDIIRRRRNPSSKLAWLLVILFLPVLGPILYLLFGR 43
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
16-71 2.27e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 34.47  E-value: 2.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1264560133  16 MAFLPIVLPIiavgaLLVFIALIDLYRHRKTRKnvlvWTLIILFVNVLGPILYFVI 71
Cdd:COG4700     1 MPFLGYYLHL-----LLQLFCAVHAVRTGRERY----WIFIIFFLPLLGCLIYFFA 47
 
Name Accession Description Interval E-value
PLDc_N pfam13396
Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of ...
 31-73 7.13e-06

Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.


Pssm-ID: 463867 [Multi-domain]  Cd Length: 43  Bit Score: 38.90  E-value: 7.13e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1264560133 31 LLVFIALIDLYRHRKTRKNVLVWTLIILFVNVLGPILYFVIGR 73
Cdd:pfam13396  1 ILAIIALIDIIRRRRNPSSKLAWLLVILFLPVLGPILYLLFGR 43
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
16-71 2.27e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 34.47  E-value: 2.27e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1264560133  16 MAFLPIVLPIiavgaLLVFIALIDLYRHRKTRKnvlvWTLIILFVNVLGPILYFVI 71
Cdd:COG4700     1 MPFLGYYLHL-----LLQLFCAVHAVRTGRERY----WIFIIFFLPLLGCLIYFFA 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH